ISDre5
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009253 | ND | Desulfotomaculum reducens | Desulfotomaculum reducens MI-1 |
DNA section
IS Length : 1537 bp
Ends
IR Length : 20/26
IRL : GAGTAAATTGCATATTTCTGAGTCCAATATTTTAGCGGTTTCTGAAGGGT
IRR : GAATGAATTGCATAATTGTTAATCCAGAAAAACGTGAATCCAAGAGTACA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTAAAGTATA | AATT | AAAAAAATAC | 4 |
DNA sequence
GAGTAAATTGCATATTTCTGAGTCCAATATTTTAGCGGTTTCTGAAGGGTAAAAAAAGGACTTCACCCCTGTTCTGGTAAAAGATATAAGTACCAACAAA
TAACCAACCAGAGAGATGAAGTTACTTGTATCTTCTACAACCAAACCTATTTTCCTTCGAAGAACTACTAAAATTTGAACCAGAGACAAAATTGCAAAAG
GTTCTTTCAGTTTTGGATCTATCTCCTGCCCTTAATGTGGTTAAAAGGGCGGTTCTCGGTCCAAAGGGTCACTGTGTCGGTAACATGATTCGTGCATTAG
TGGCAAAACAATTAGAACAAATACCTACAGTCGCTGCATTAGTAAAAAGACTATCTAATGATATAAGGTTTCGGTTCCAATGTGGTTTTTCGCTTAGTAA
ACCAATTCCAAGTGAATCCACCTTTAGTCGTCTGATACAAAAACTCGCAGCAACTGATGAGACAAACAAAACAGAAAGTGTCATGAAGCAGATTTTTGAT
AACCTAGTTAAAAGTGCTAAAGATATGGGATTAATAGATTCGAATTGTGTTGCAATTGACTCTAGCAAAATAGATGCGTATGAAAAATCCAAGCCTAAAA
AGGATTTGCAGGGTGACAAAACTGCAAACTGGGGTGCTAAAAGGGATACTCATGGTAACCAAATATCCTGGTTTGGATATAAAGCTCACGTTGCAGTTGA
TTGCCATAGTGAACTACCAATTGCTATTATGGTTACACCTGCTAATACCCATGATGCTAAGATGGCAATACCTTTAATCGAATTAGTAAACAAGGCCTTG
GAAGACTCAAAAAAACCTAAATACTATACCATGGATATGGGCTATGACAGTAAAGACATCTACTCTGTAGTAATGAACGACTTCAATGCTCAAGCAATTA
TCCCCATTAACTCCCGAGGCTCTAAGGACCATCCTGAAGGCTGTGACTTTGATGGAACCCCTATATGCTCAATGGGGCAAAGAATGGTGTTCTGGGGAAG
TGATGCAAAGGCTGGAACCAATAAATATAGGTGCCCGCATGTAATGGGCAAATGTGATTGCCCCTACGGGTCTGCCTGGTGCTCACCATCTTCCTACGGT
TTAGTTGTAAAGACTAAAGTTAAAGACGATCCAAGAATGAACTGTATACCAGCCCGTGGTACTAAGAACTGGCAAAGCCTTTATAACAAAAGAACTTCCG
TAGAAAGATGTTTTGGTCGATTAAAACAACACTTGGGTGCTAACAGTATTCGTACCAGAGGATTGGAAAAAGTTACTCTCCACATAACATTGAGTTGTAT
TGCACTACTGGCTGGTAGTATTGCAGTAGCAAAGACCAAAAGAATTGAGCAGGCAGCTTAATAAATATTTTAATTTAAAGCGATTTACTATAGTATAGGA
TACTTATCACTACTCATTAGGTAAATTTTGTAAATTAATGCTGAGATCCTAAATTTTCAAAATTTATTTTAAAAAATTAAGCTATTTTGTACTCTTGGAT
TCACGTTTTTCTGGATTAACAATTATGCAATTCATTC
TAACCAACCAGAGAGATGAAGTTACTTGTATCTTCTACAACCAAACCTATTTTCCTTCGAAGAACTACTAAAATTTGAACCAGAGACAAAATTGCAAAAG
GTTCTTTCAGTTTTGGATCTATCTCCTGCCCTTAATGTGGTTAAAAGGGCGGTTCTCGGTCCAAAGGGTCACTGTGTCGGTAACATGATTCGTGCATTAG
TGGCAAAACAATTAGAACAAATACCTACAGTCGCTGCATTAGTAAAAAGACTATCTAATGATATAAGGTTTCGGTTCCAATGTGGTTTTTCGCTTAGTAA
ACCAATTCCAAGTGAATCCACCTTTAGTCGTCTGATACAAAAACTCGCAGCAACTGATGAGACAAACAAAACAGAAAGTGTCATGAAGCAGATTTTTGAT
AACCTAGTTAAAAGTGCTAAAGATATGGGATTAATAGATTCGAATTGTGTTGCAATTGACTCTAGCAAAATAGATGCGTATGAAAAATCCAAGCCTAAAA
AGGATTTGCAGGGTGACAAAACTGCAAACTGGGGTGCTAAAAGGGATACTCATGGTAACCAAATATCCTGGTTTGGATATAAAGCTCACGTTGCAGTTGA
TTGCCATAGTGAACTACCAATTGCTATTATGGTTACACCTGCTAATACCCATGATGCTAAGATGGCAATACCTTTAATCGAATTAGTAAACAAGGCCTTG
GAAGACTCAAAAAAACCTAAATACTATACCATGGATATGGGCTATGACAGTAAAGACATCTACTCTGTAGTAATGAACGACTTCAATGCTCAAGCAATTA
TCCCCATTAACTCCCGAGGCTCTAAGGACCATCCTGAAGGCTGTGACTTTGATGGAACCCCTATATGCTCAATGGGGCAAAGAATGGTGTTCTGGGGAAG
TGATGCAAAGGCTGGAACCAATAAATATAGGTGCCCGCATGTAATGGGCAAATGTGATTGCCCCTACGGGTCTGCCTGGTGCTCACCATCTTCCTACGGT
TTAGTTGTAAAGACTAAAGTTAAAGACGATCCAAGAATGAACTGTATACCAGCCCGTGGTACTAAGAACTGGCAAAGCCTTTATAACAAAAGAACTTCCG
TAGAAAGATGTTTTGGTCGATTAAAACAACACTTGGGTGCTAACAGTATTCGTACCAGAGGATTGGAAAAAGTTACTCTCCACATAACATTGAGTTGTAT
TGCACTACTGGCTGGTAGTATTGCAGTAGCAAAGACCAAAAGAATTGAGCAGGCAGCTTAATAAATATTTTAATTTAAAGCGATTTACTATAGTATAGGA
TACTTATCACTACTCATTAGGTAAATTTTGTAAATTAATGCTGAGATCCTAAATTTTCAAAATTTATTTTAAAAAATTAAGCTATTTTGTACTCTTGGAT
TCACGTTTTTCTGGATTAACAATTATGCAATTCATTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1236 bp | 411 aa | 126 | 1361 | + | No |
Chemistry : DDE
ORF sequence :
MYLLQPNLFSFEELLKFEPETKLQKVLSVLDLSPALNVVKRAVLGPKGHCVGNMIRALVAKQLEQIPTVAALVKRLSNDIRFRFQCGFSLSKPIPSESTF
SRLIQKLAATDETNKTESVMKQIFDNLVKSAKDMGLIDSNCVAIDSSKIDAYEKSKPKKDLQGDKTANWGAKRDTHGNQISWFGYKAHVAVDCHSELPIA
IMVTPANTHDAKMAIPLIELVNKALEDSKKPKYYTMDMGYDSKDIYSVVMNDFNAQAIIPINSRGSKDHPEGCDFDGTPICSMGQRMVFWGSDAKAGTNK
YRCPHVMGKCDCPYGSAWCSPSSYGLVVKTKVKDDPRMNCIPARGTKNWQSLYNKRTSVERCFGRLKQHLGANSIRTRGLEKVTLHITLSCIALLAGSIA
VAKTKRIEQAA
SRLIQKLAATDETNKTESVMKQIFDNLVKSAKDMGLIDSNCVAIDSSKIDAYEKSKPKKDLQGDKTANWGAKRDTHGNQISWFGYKAHVAVDCHSELPIA
IMVTPANTHDAKMAIPLIELVNKALEDSKKPKYYTMDMGYDSKDIYSVVMNDFNAQAIIPINSRGSKDHPEGCDFDGTPICSMGQRMVFWGSDAKAGTNK
YRCPHVMGKCDCPYGSAWCSPSSYGLVVKTKVKDDPRMNCIPARGTKNWQSLYNKRTSVERCFGRLKQHLGANSIRTRGLEKVTLHITLSCIALLAGSIA
VAKTKRIEQAA
Blast result :
Comments
ISDre5 is 46% aa similar to ISDha11.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (20007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (20007) Direct submission GenBank.