ISRel25
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004041 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a Rhizobium etli CFN 42 symbiotic plasmid p42d |
DNA section
IS Length : 1638 bp
Ends
Left end : AACACCTTCGGAAGTCTGCGTTGAATGAGGCTTTGACCAGCTGCGTAGCCCCCATCAGGCGAAGCAGGTGGTCATAGCCAGGCCTCAGGTCTCACAGTGG
Right end : TGACGATTGGCCGGGCCTACATCATAATTCAAACGCATCGGGAGACCGACGCGATAACGACCTGCTGCCAAAACGGCGTTTCATTCCGATTATAGGACGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGTGCCGT | TGTCGGAGAC | 0 | |
TCGGTGCCGT | TGTCGGAGAC | 0 |
DNA sequence
AACACCTTCGGAAGTCTGCGTTGAATGAGGCTTTGACCAGCTGCGTAGCCCCCATCAGGCGAAGCAGGTGGTCATAGCCAGGCCTCAGGTCTCACAGTGG
TTTTGCGAAGCCACACTGTAAAGGAGACAGGCTATGACCGATTGTGACATTACCGCATTTACCCCCGTTCTGGCAGCTATCGATGTTTCCAAAGAACGCC
ACGAGGTGCTGATCGAAGCACCGGACAAAAAGCGTCGACGTCGAGTGATCGTGCTCAACAATCTCGATGAGTTCGATCGCCTCATCGGCCTGCTGCGTAG
CTATCAGCGTCCTGTCCGTGTCGCCTTTGAGGCAACGGGAAACTATCATCGCGCATTGGCATATCGGCTCGGCTTAGCGGGCTTCGAGATCAAATTGATC
TCGTCCATCGCACTGGCTCGGACCAGGGAGGCACTGCATAATTCCTGGGATAAAAATGATCCAAAGGATGCCCAGGTTATCCTCCATATGATGACCATTG
GTGCCGAGCAGTTCTACCATGACCCGTTGATGCGCGGCACCAACGACATTCAGGAGTTGTCGAAGACCCACGATATGATCTCAAGGTCGAAGACCGAACT
GTGGCATCGGATTCTGACGCATTACCTGCCGTTGTATTTCCCTGAAGCGGATCGCTTCCACCGCAGTTCGCGCAGCGACTGGTTCTTTGCTTTCCTTGAA
CTGTTTCCGTCTCCGCACTTCATCGCAGCCATGAACAAGGACGCTTTCATCAAAGCTGCCTGGGAGGTGGTTGGTCGCAAAGTTGGCAAAGAGCGTTTGT
TGGCAGATATTTACGCAACGTCCGCCCGTTCGATAGGCCTTCCAGTTGCACCGGACTCTGACGCTATCTGCATGTTTCGTATGATCCTGGCCGAGGGCAG
AAGCCTAATCGCCCAACGTAATGAGATCGAGGCGCGTGCGGTTGCGATGCTGAAGGACAACGCAGATTACCAGCTCTTATGCACAATCCCCGGCATTGGC
CCAATCAATGCTCTGACAATCATGGCAGAAGCTGGGGACCTGCGCCGGTTTCAACACCATCGCCAGTTCCTGAAGTTCTGCGGCATGGATCTTGCGACAA
TCCAGTCAGGAATGTTTCGAGGCCAGACCAAACTCTCCAAATATGGAAATGCACGGCTGAGGCGGACCTTATGGATGGCAGCTCAAGTCGCGATATTGCA
GCGCGCCAACAGCTTCCGCGACAAGTTCGAGCGATACATCACCAAGGACCGTCACAACACCCATTTACGTCGCAAGGCGTCAACAGCAATCGCCGCCAAG
ATGGCCCGCACCGTACATGCGGTTATCAAAAGCGGTGAACCTTATCGCCCCTTCTTTGAAGGGACGATCCACAGCGGAAGGACCCTTCTCTGACAGTGCC
GTGGAGGCGTTGAGCTGCTCAGCGACCTCGTAGATAATGTTCAGGCCTTCCGCTCGACGGCAAAAAGGATCTCGTCTTAAGGACGGTGAGAGCCGCGATC
ATGCGTACTCTGTGTTTGTTATGGGAGAGACCGTTCGTTGACGATTGGCCGGGCCTACATCATAATTCAAACGCATCGGGAGACCGACGCGATAACGACC
TGCTGCCAAAACGGCGTTTCATTCCGATTATAGGACGT
TTTTGCGAAGCCACACTGTAAAGGAGACAGGCTATGACCGATTGTGACATTACCGCATTTACCCCCGTTCTGGCAGCTATCGATGTTTCCAAAGAACGCC
ACGAGGTGCTGATCGAAGCACCGGACAAAAAGCGTCGACGTCGAGTGATCGTGCTCAACAATCTCGATGAGTTCGATCGCCTCATCGGCCTGCTGCGTAG
CTATCAGCGTCCTGTCCGTGTCGCCTTTGAGGCAACGGGAAACTATCATCGCGCATTGGCATATCGGCTCGGCTTAGCGGGCTTCGAGATCAAATTGATC
TCGTCCATCGCACTGGCTCGGACCAGGGAGGCACTGCATAATTCCTGGGATAAAAATGATCCAAAGGATGCCCAGGTTATCCTCCATATGATGACCATTG
GTGCCGAGCAGTTCTACCATGACCCGTTGATGCGCGGCACCAACGACATTCAGGAGTTGTCGAAGACCCACGATATGATCTCAAGGTCGAAGACCGAACT
GTGGCATCGGATTCTGACGCATTACCTGCCGTTGTATTTCCCTGAAGCGGATCGCTTCCACCGCAGTTCGCGCAGCGACTGGTTCTTTGCTTTCCTTGAA
CTGTTTCCGTCTCCGCACTTCATCGCAGCCATGAACAAGGACGCTTTCATCAAAGCTGCCTGGGAGGTGGTTGGTCGCAAAGTTGGCAAAGAGCGTTTGT
TGGCAGATATTTACGCAACGTCCGCCCGTTCGATAGGCCTTCCAGTTGCACCGGACTCTGACGCTATCTGCATGTTTCGTATGATCCTGGCCGAGGGCAG
AAGCCTAATCGCCCAACGTAATGAGATCGAGGCGCGTGCGGTTGCGATGCTGAAGGACAACGCAGATTACCAGCTCTTATGCACAATCCCCGGCATTGGC
CCAATCAATGCTCTGACAATCATGGCAGAAGCTGGGGACCTGCGCCGGTTTCAACACCATCGCCAGTTCCTGAAGTTCTGCGGCATGGATCTTGCGACAA
TCCAGTCAGGAATGTTTCGAGGCCAGACCAAACTCTCCAAATATGGAAATGCACGGCTGAGGCGGACCTTATGGATGGCAGCTCAAGTCGCGATATTGCA
GCGCGCCAACAGCTTCCGCGACAAGTTCGAGCGATACATCACCAAGGACCGTCACAACACCCATTTACGTCGCAAGGCGTCAACAGCAATCGCCGCCAAG
ATGGCCCGCACCGTACATGCGGTTATCAAAAGCGGTGAACCTTATCGCCCCTTCTTTGAAGGGACGATCCACAGCGGAAGGACCCTTCTCTGACAGTGCC
GTGGAGGCGTTGAGCTGCTCAGCGACCTCGTAGATAATGTTCAGGCCTTCCGCTCGACGGCAAAAAGGATCTCGTCTTAAGGACGGTGAGAGCCGCGATC
ATGCGTACTCTGTGTTTGTTATGGGAGAGACCGTTCGTTGACGATTGGCCGGGCCTACATCATAATTCAAACGCATCGGGAGACCGACGCGATAACGACC
TGCTGCCAAAACGGCGTTTCATTCCGATTATAGGACGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 134 | 1393 | + | No |
Chemistry : DEDD
ORF sequence :
MTDCDITAFTPVLAAIDVSKERHEVLIEAPDKKRRRRVIVLNNLDEFDRLIGLLRSYQRPVRVAFEATGNYHRALAYRLGLAGFEIKLISSIALARTREA
LHNSWDKNDPKDAQVILHMMTIGAEQFYHDPLMRGTNDIQELSKTHDMISRSKTELWHRILTHYLPLYFPEADRFHRSSRSDWFFAFLELFPSPHFIAAM
NKDAFIKAAWEVVGRKVGKERLLADIYATSARSIGLPVAPDSDAICMFRMILAEGRSLIAQRNEIEARAVAMLKDNADYQLLCTIPGIGPINALTIMAEA
GDLRRFQHHRQFLKFCGMDLATIQSGMFRGQTKLSKYGNARLRRTLWMAAQVAILQRANSFRDKFERYITKDRHNTHLRRKASTAIAAKMARTVHAVIKS
GEPYRPFFEGTIHSGRTLL
LHNSWDKNDPKDAQVILHMMTIGAEQFYHDPLMRGTNDIQELSKTHDMISRSKTELWHRILTHYLPLYFPEADRFHRSSRSDWFFAFLELFPSPHFIAAM
NKDAFIKAAWEVVGRKVGKERLLADIYATSARSIGLPVAPDSDAICMFRMILAEGRSLIAQRNEIEARAVAMLKDNADYQLLCTIPGIGPINALTIMAEA
GDLRRFQHHRQFLKFCGMDLATIQSGMFRGQTKLSKYGNARLRRTLWMAAQVAILQRANSFRDKFERYITKDRHNTHLRRKASTAIAAKMARTVHAVIKS
GEPYRPFFEGTIHSGRTLL
Blast result :
Comments
ISRel25 is 80% aa similar to IMex12.
References