ISRel25

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004041 ND Rhizobium etli
Rhizobium etli CFN 42 plasmid p42a
Rhizobium etli CFN 42 symbiotic plasmid p42d
DNA section
IS Length : 1638 bp

Ends


Left end : AACACCTTCGGAAGTCTGCGTTGAATGAGGCTTTGACCAGCTGCGTAGCCCCCATCAGGCGAAGCAGGTGGTCATAGCCAGGCCTCAGGTCTCACAGTGG
Right end : TGACGATTGGCCGGGCCTACATCATAATTCAAACGCATCGGGAGACCGACGCGATAACGACCTGCTGCCAAAACGGCGTTTCATTCCGATTATAGGACGT

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTGCCGTTGTCGGAGAC0
TCGGTGCCGTTGTCGGAGAC0

DNA sequence

AACACCTTCGGAAGTCTGCGTTGAATGAGGCTTTGACCAGCTGCGTAGCCCCCATCAGGCGAAGCAGGTGGTCATAGCCAGGCCTCAGGTCTCACAGTGG
TTTTGCGAAGCCACACTGTAAAGGAGACAGGCTATGACCGATTGTGACATTACCGCATTTACCCCCGTTCTGGCAGCTATCGATGTTTCCAAAGAACGCC
ACGAGGTGCTGATCGAAGCACCGGACAAAAAGCGTCGACGTCGAGTGATCGTGCTCAACAATCTCGATGAGTTCGATCGCCTCATCGGCCTGCTGCGTAG
CTATCAGCGTCCTGTCCGTGTCGCCTTTGAGGCAACGGGAAACTATCATCGCGCATTGGCATATCGGCTCGGCTTAGCGGGCTTCGAGATCAAATTGATC
TCGTCCATCGCACTGGCTCGGACCAGGGAGGCACTGCATAATTCCTGGGATAAAAATGATCCAAAGGATGCCCAGGTTATCCTCCATATGATGACCATTG
GTGCCGAGCAGTTCTACCATGACCCGTTGATGCGCGGCACCAACGACATTCAGGAGTTGTCGAAGACCCACGATATGATCTCAAGGTCGAAGACCGAACT
GTGGCATCGGATTCTGACGCATTACCTGCCGTTGTATTTCCCTGAAGCGGATCGCTTCCACCGCAGTTCGCGCAGCGACTGGTTCTTTGCTTTCCTTGAA
CTGTTTCCGTCTCCGCACTTCATCGCAGCCATGAACAAGGACGCTTTCATCAAAGCTGCCTGGGAGGTGGTTGGTCGCAAAGTTGGCAAAGAGCGTTTGT
TGGCAGATATTTACGCAACGTCCGCCCGTTCGATAGGCCTTCCAGTTGCACCGGACTCTGACGCTATCTGCATGTTTCGTATGATCCTGGCCGAGGGCAG
AAGCCTAATCGCCCAACGTAATGAGATCGAGGCGCGTGCGGTTGCGATGCTGAAGGACAACGCAGATTACCAGCTCTTATGCACAATCCCCGGCATTGGC
CCAATCAATGCTCTGACAATCATGGCAGAAGCTGGGGACCTGCGCCGGTTTCAACACCATCGCCAGTTCCTGAAGTTCTGCGGCATGGATCTTGCGACAA
TCCAGTCAGGAATGTTTCGAGGCCAGACCAAACTCTCCAAATATGGAAATGCACGGCTGAGGCGGACCTTATGGATGGCAGCTCAAGTCGCGATATTGCA
GCGCGCCAACAGCTTCCGCGACAAGTTCGAGCGATACATCACCAAGGACCGTCACAACACCCATTTACGTCGCAAGGCGTCAACAGCAATCGCCGCCAAG
ATGGCCCGCACCGTACATGCGGTTATCAAAAGCGGTGAACCTTATCGCCCCTTCTTTGAAGGGACGATCCACAGCGGAAGGACCCTTCTCTGACAGTGCC
GTGGAGGCGTTGAGCTGCTCAGCGACCTCGTAGATAATGTTCAGGCCTTCCGCTCGACGGCAAAAAGGATCTCGTCTTAAGGACGGTGAGAGCCGCGATC
ATGCGTACTCTGTGTTTGTTATGGGAGAGACCGTTCGTTGACGATTGGCCGGGCCTACATCATAATTCAAACGCATCGGGAGACCGACGCGATAACGACC
TGCTGCCAAAACGGCGTTTCATTCCGATTATAGGACGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1260 bp419 aa1341393+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTDCDITAFTPVLAAIDVSKERHEVLIEAPDKKRRRRVIVLNNLDEFDRLIGLLRSYQRPVRVAFEATGNYHRALAYRLGLAGFEIKLISSIALARTREA
LHNSWDKNDPKDAQVILHMMTIGAEQFYHDPLMRGTNDIQELSKTHDMISRSKTELWHRILTHYLPLYFPEADRFHRSSRSDWFFAFLELFPSPHFIAAM
NKDAFIKAAWEVVGRKVGKERLLADIYATSARSIGLPVAPDSDAICMFRMILAEGRSLIAQRNEIEARAVAMLKDNADYQLLCTIPGIGPINALTIMAEA
GDLRRFQHHRQFLKFCGMDLATIQSGMFRGQTKLSKYGNARLRRTLWMAAQVAILQRANSFRDKFERYITKDRHNTHLRRKASTAIAAKMARTVHAVIKS
GEPYRPFFEGTIHSGRTLL

 

Blast result :
Comments
ISRel25 is 80% aa similar to IMex12.
References