ISRel21
- Family IS3
- Group IS407
Isoform Synonym(s) ISRel14
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007762 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a |
DNA section
IS Length : 1200 bp
Ends
IR Length : 21/28
IRL : TGGACCAGTTTTGGTTAGAGTTTTCCGGTGCATTTTCCTGGCTGGGAAAG
IRR : TGGACCACCGGATGCTAGAGTTTTCCGGCTTTATTCAGGGAGGCGGGCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCCTTCAA | AC | ACGTTTGGGA | 2 |
DNA sequence
TGGACCAGTTTTGGTTAGAGTTTTCCGGTGCATTTTCCTGGCTGGGAAAGGGACCAGAAGACGATGAAAGCGTCGCAGTTTTCGGACGCTCAGAAGGCGT
TCATTCTGAAGCAAGGTGATGAAGGCGTGTCGGTTGCTGAAATCTGCAGGAAGGCGGGGATCAGCCAGGCGACTTATTTCAACTGGAAGAAAAAATACGC
GGGCATGCTGCCACCGGAGATGAAGAGGCTGAAACAGCTCGAGGACGAGAATTCGCGCCTGAAGAAGATCGTCGCGGATCTGACGCTGGACCGCGAGATG
TTGCAGGATGTCATCCGCCGAAAGCTCTAAGGCCTGCTCGGAAGCGGGAGATGGTGAAAGGCATGTGCTGCGATTGGGCGATCTCGATCCGACGTGCTTG
TGGAGCGTTGAACTTCGATCGATCAACTCACCACTATACCTCTCGCCGTGCTGATCAGGCCGGTCTGGAACGTCGTATTCGCGAGATCTGCGAGATCCGT
GTGCGGTACGGCTATCGCCGCGTGCATGTGCTGTTGGAACGCGAGGGTTGGGGCACCAACATCAAGCGAACCTACCGCATTTACAGGGACTTGGGGCTAC
AGTTGCGGAACAAGACACCGAAGCGGAGGGTAAAGGCCAAGCTTCGCGAGGATCGGCACATGGCCGTCGGACCCAACGACGTCTGGGCGATGGACTTCGT
CCATGACCAACTCGCAATCGGTAAGAAACTGCGCGTGCTGACGGTGGTCGACACCTTCTCGCGCTACGTGCCGGTGCTTGATCCACGTCATAGCTATAGA
GGCGAAGACGTTGTGCAAACCCTTGAACGGGTGTGCCAAAAAGCCGGCTATCCGAAAACGATCCGTGTCGACCAAGGGACGGAATTCGTGTCGCGCGACT
TGGACCTGTGGGCCTATTCCAAGGGCGTGACGTTGGACTTCTCACGCCCCGGCAAGCCAACTGATAATGCCTTCATCGAAGCGTTCAATGGCCGCTTCCG
TGCAGAATGCCTGAACCAGCATTGGTTCCTGACCCTTGCGGATGCCCGCGAAAAGATGGAGGATTGGCGTAGATACTACAATGAGGAAAGACCTCATGGT
GCGATCGGCAACAAGGTGCCGATCTCGTTGGTGAATTCAGGGTGCGCAACCAGCCCGCCTCCCTGAATAAAGCCGGAAAACTCTAGCATCCGGTGGTCCA
TCATTCTGAAGCAAGGTGATGAAGGCGTGTCGGTTGCTGAAATCTGCAGGAAGGCGGGGATCAGCCAGGCGACTTATTTCAACTGGAAGAAAAAATACGC
GGGCATGCTGCCACCGGAGATGAAGAGGCTGAAACAGCTCGAGGACGAGAATTCGCGCCTGAAGAAGATCGTCGCGGATCTGACGCTGGACCGCGAGATG
TTGCAGGATGTCATCCGCCGAAAGCTCTAAGGCCTGCTCGGAAGCGGGAGATGGTGAAAGGCATGTGCTGCGATTGGGCGATCTCGATCCGACGTGCTTG
TGGAGCGTTGAACTTCGATCGATCAACTCACCACTATACCTCTCGCCGTGCTGATCAGGCCGGTCTGGAACGTCGTATTCGCGAGATCTGCGAGATCCGT
GTGCGGTACGGCTATCGCCGCGTGCATGTGCTGTTGGAACGCGAGGGTTGGGGCACCAACATCAAGCGAACCTACCGCATTTACAGGGACTTGGGGCTAC
AGTTGCGGAACAAGACACCGAAGCGGAGGGTAAAGGCCAAGCTTCGCGAGGATCGGCACATGGCCGTCGGACCCAACGACGTCTGGGCGATGGACTTCGT
CCATGACCAACTCGCAATCGGTAAGAAACTGCGCGTGCTGACGGTGGTCGACACCTTCTCGCGCTACGTGCCGGTGCTTGATCCACGTCATAGCTATAGA
GGCGAAGACGTTGTGCAAACCCTTGAACGGGTGTGCCAAAAAGCCGGCTATCCGAAAACGATCCGTGTCGACCAAGGGACGGAATTCGTGTCGCGCGACT
TGGACCTGTGGGCCTATTCCAAGGGCGTGACGTTGGACTTCTCACGCCCCGGCAAGCCAACTGATAATGCCTTCATCGAAGCGTTCAATGGCCGCTTCCG
TGCAGAATGCCTGAACCAGCATTGGTTCCTGACCCTTGCGGATGCCCGCGAAAAGATGGAGGATTGGCGTAGATACTACAATGAGGAAAGACCTCATGGT
GCGATCGGCAACAAGGTGCCGATCTCGTTGGTGAATTCAGGGTGCGCAACCAGCCCGCCTCCCTGAATAAAGCCGGAAAACTCTAGCATCCGGTGGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 64 | 330 | + | No |
Description : First part of the transposase
ORF sequence :
MKASQFSDAQKAFILKQGDEGVSVAEICRKAGISQATYFNWKKKYAGMLPPEMKRLKQLEDENSRLKKIVADLTLDREMLQDVIRRKL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 141 | 1166 | + | No |
Description : Second part of the transposase
ORF sequence :
NLQEGGDQPGDLFQLEEKIRGHAATGDEEAETARGREFAPEEDRRGSDAGPRDVAGCHPPKALRPARKREMVKGMCCDWAISIRRACGALNFDRSTHHYT
SRRADQAGLERRIREICEIRVRYGYRRVHVLLEREGWGTNIKRTYRIYRDLGLQLRNKTPKRRVKAKLREDRHMAVGPNDVWAMDFVHDQLAIGKKLRVL
TVVDTFSRYVPVLDPRHSYRGEDVVQTLERVCQKAGYPKTIRVDQGTEFVSRDLDLWAYSKGVTLDFSRPGKPTDNAFIEAFNGRFRAECLNQHWFLTLA
DAREKMEDWRRYYNEERPHGAIGNKVPISLVNSGCATSPPP
SRRADQAGLERRIREICEIRVRYGYRRVHVLLEREGWGTNIKRTYRIYRDLGLQLRNKTPKRRVKAKLREDRHMAVGPNDVWAMDFVHDQLAIGKKLRVL
TVVDTFSRYVPVLDPRHSYRGEDVVQTLERVCQKAGYPKTIRVDQGTEFVSRDLDLWAYSKGVTLDFSRPGKPTDNAFIEAFNGRFRAECLNQHWFLTLA
DAREKMEDWRRYYNEERPHGAIGNKVPISLVNSGCATSPPP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1103 bp | 367 aa | 64 | 1166 | + | Yes |
Chemistry : DDE
ORF sequence :
MKASQFSDAQKAFILKQGDEGVSVAEICRKAGISQATYFNWKKKYAGMLPPEMKRLKQLEDENSRLKKIVADLTLDREMLQDVIRRKALRPARKREMVKG
MCCDWAISIRRACGALNFDRSTHHYTSRRADQAGLERRIREICEIRVRYGYRRVHVLLEREGWGTNIKRTYRIYRDLGLQLRNKTPKRRVKAKLREDRHM
AVGPNDVWAMDFVHDQLAIGKKLRVLTVVDTFSRYVPVLDPRHSYRGEDVVQTLERVCQKAGYPKTIRVDQGTEFVSRDLDLWAYSKGVTLDFSRPGKPT
DNAFIEAFNGRFRAECLNQHWFLTLADAREKMEDWRRYYNEERPHGAIGNKVPISLVNSGCATSPPP
MCCDWAISIRRACGALNFDRSTHHYTSRRADQAGLERRIREICEIRVRYGYRRVHVLLEREGWGTNIKRTYRIYRDLGLQLRNKTPKRRVKAKLREDRHM
AVGPNDVWAMDFVHDQLAIGKKLRVLTVVDTFSRYVPVLDPRHSYRGEDVVQTLERVCQKAGYPKTIRVDQGTEFVSRDLDLWAYSKGVTLDFSRPGKPT
DNAFIEAFNGRFRAECLNQHWFLTLADAREKMEDWRRYYNEERPHGAIGNKVPISLVNSGCATSPPP
Blast result :
Comments
ISRel21 is 96% aa similar to ISRle5.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible +1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible +1 frameshift.
References