ISRel16
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007762 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a Rhizobium etli Kim 5 |
DNA section
IS Length : 2597 bp
Ends
IR Length : 38/49
IRL : TGCAGATTCCGAGGCAATCCGCCCCCGCATTCCGAAATGATGCCGCCCCC
IRR : TGCCGATTCCGATGAAGCCGCCCCTTTGTTCCGAGATGATTGCGCCCCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTCGTCGA | ATCATGTA | CGAGCTGGCA | 8 |
AAAAACCGCT | CATAGTC | CGCTCGCCGA | 7 |
DNA sequence
TGCAGATTCCGAGGCAATCCGCCCCCGCATTCCGAAATGATGCCGCCCCCCAATTCCGAGAATTAACCGCCCCCTTGTTCCGAGATGATGCCGCCCCCTC
ATTGGGGCTGTTTGTCGGGGTGTCCTGCTGGTGAGACGTTCTTCCTTTCAGTTGCTCGAGAGGAAGGAACGCGATGCCAGCGGAGAGACTAAAGATGCGG
CGTGTCCGCGAGATTCTGAGATACAGATTTGAGGAAGGCCTTGGCCACAAGTCGATTGCGGTGCGCGTTGGTACGGCGCCCTCGACGGTGCGCGAGACGT
TGCGCCGTTTGGAGCGTGCCGGACTTTCCAGGCCTTTGGGCGACGATGTCAGCGATGCGGTGTTGGAGGCGGCTCTCTATAAGGCTGCCGGCACGAAGAC
CGGTCACCGTCGCAGTGTCGAGCCGGATTGGGCGCATGTTCACCGGGAGCTGAAGCGCAAGCATGTGACGCTGCAGATCCTCTGGGACGAGTATATCGGC
CTTCATCCCGATGGATATCGCTACAGCCGCTACTGTGATTTGTATCGCGCTTGGGCGGTGAAGCTGCCGGTGACGATGCGCCAGGATCATGCGGCTGGCG
AAAAGCTGTTCGTCGATTATGCCGGCGACACAGTGACGGTGGTCGTCGACAGATTGTCGGGAAAGACGCGACAGGCGCATCTGTTCGTTGCGGTGTTGGG
GGCATCGAGCCTGTCATTTGCACACGCCCGCTGGAGCGAAACACTTCCCGACTGGATTGAGTGCCACCTGCTGGCGCTTGAGGCGTTTGGTGGCGCGCCG
GCATTGCTTGTCCCTGACAACGCCAAAGTGGCCGTGATCAAGGCCTGCCATTTTGATCCGCAGGTCAATCGCACCTATGCCGGGATGGCAGCTCACTACG
GAAGCTCTGTTCTTCCGACGCGACCACGCCGGCCGCGGGACAAGGCGAAAGTGGAGGCAGCGGTTCGCATTGTCGAGCGCTGGTTGCTTGGCCGAATGCG
CCACCGCGTCTTCTACAGCCTTGCCGACGTCAATGCGGCAATCATGGAATTGCTCGCCGATCTCAACGACACCCGTGTTCTGCGTCGTGTCGGGCGCACA
AGGCGACAGTTGTTTGAAGAGATCGACTATCCGGCCCTGCGGCCGCTTGCCGTCGAACGATACGTCTTTGCTGAATGGAAGATACGCCGGGCTGGGCTCG
ATTATCATGTCGATATCGACAAGCACTATTACTCCGTGCCCTATCGTTTTGCCCGTGAGCAAGTCGAGGCACGCATCACCGCCAATACCATCGAGATCTT
CTACAAGGGCGAGCGGATTGCCGCCCACCGGCGTTCGAGCGGCAATGGCAAGCACACGACAACTCCCGAGCACATGCCATCATCCCATCGCCGCTTTGCC
GACTGGACGATAGAGCGCATTAGCCGCGAGGCGTCGGCAATCGGATCGGACGTTGCATTGCTCTGCGAGCGTATTCTCGCTGATCGGCCGCATCCGGAAC
AGGGCTACAGAGCCTGCCTGGGCATTATCCGCCTCGTCAAAGCATTCGAACGCGAGAGGGTCAACGCGGCCTGCGGCCGAGCATTGGAAATCGGCGCTCG
AACCTATGGATCGGTGCGCTCCATTCTCGACAATCACCTCGACCGATCTTCGTCATCAAGCACAGCATCACCCGAGCCGATCAATCACTCCAACATCCGC
GGCCCCCGCTATTACCACTGAGGAGACGACATATGCTTGCACATCCCACCCTTGATAAATTGAATGCCATGGGCCTGACCGGCATGGCCAAGGCGTTCAA
CGAACTGATCAGCAACGGCGAGAGCGAACAACTCTCCCATGCCGAATGGCTCGGGCTGCTGCTCGAACGAGAATGGAGCTCGCGCCACGATCGCAAGCTT
GCCGCCCGTCTGCGGTTTGCCAAACTGCGCCACCATGCTGTGCCTGAGGATGTCGATTACCGCAGCGAGCGCGGTCTCGATCGGGCGCTGTTCATGAAGC
TGATCGGCGGCGACTGGATCGATGCCCACGACAACCTCGCGATCTGCGGGCCATCTGGCGTCGGAAAAAGCTGGTTGGCCTGTGCGCTCGGGCACAAGGC
TTGCCGCGATGATCGCTCGGTTCTCTATCAGCGCGTGCCGCGGCTGTTTGCCAATCTTGCTCTCGCTCACGGCGATGGCCGCTATGCAAGGCTGCAGCGA
ACCCTCGGGCACGTCCAGCTCTTGATCCTCGATGACTGGGGTCTGGAACCGCTCAACGAGCAGGCTCGCCACGACCTTCTGGAGATCCTCGAGGATCGCT
ACGGCCGCCGCTCGACAATCATTACCAGTCAGCTTCCGGTATCAGCCTGGCATGAGATCATCGGCAACCCAACCTACGCCGATGCCATCCTCGATCGCCT
CGTTCACAACGCCCATCGCATAGACCTATCCGGGGAAAGCTTGCGGCGAAATCAGCGCCGGAAATCTTGACTCGCTACACGAATGAACTGACAACAATCA
CTGCCAGCAGGACCCCAGCCTCAGGGGGGCGAGATCATCCCGGAATCCCGGGGCGCAATCATCTCGGAACAAAGGGGCGGCTTCATCGGAATCGGCA
ATTGGGGCTGTTTGTCGGGGTGTCCTGCTGGTGAGACGTTCTTCCTTTCAGTTGCTCGAGAGGAAGGAACGCGATGCCAGCGGAGAGACTAAAGATGCGG
CGTGTCCGCGAGATTCTGAGATACAGATTTGAGGAAGGCCTTGGCCACAAGTCGATTGCGGTGCGCGTTGGTACGGCGCCCTCGACGGTGCGCGAGACGT
TGCGCCGTTTGGAGCGTGCCGGACTTTCCAGGCCTTTGGGCGACGATGTCAGCGATGCGGTGTTGGAGGCGGCTCTCTATAAGGCTGCCGGCACGAAGAC
CGGTCACCGTCGCAGTGTCGAGCCGGATTGGGCGCATGTTCACCGGGAGCTGAAGCGCAAGCATGTGACGCTGCAGATCCTCTGGGACGAGTATATCGGC
CTTCATCCCGATGGATATCGCTACAGCCGCTACTGTGATTTGTATCGCGCTTGGGCGGTGAAGCTGCCGGTGACGATGCGCCAGGATCATGCGGCTGGCG
AAAAGCTGTTCGTCGATTATGCCGGCGACACAGTGACGGTGGTCGTCGACAGATTGTCGGGAAAGACGCGACAGGCGCATCTGTTCGTTGCGGTGTTGGG
GGCATCGAGCCTGTCATTTGCACACGCCCGCTGGAGCGAAACACTTCCCGACTGGATTGAGTGCCACCTGCTGGCGCTTGAGGCGTTTGGTGGCGCGCCG
GCATTGCTTGTCCCTGACAACGCCAAAGTGGCCGTGATCAAGGCCTGCCATTTTGATCCGCAGGTCAATCGCACCTATGCCGGGATGGCAGCTCACTACG
GAAGCTCTGTTCTTCCGACGCGACCACGCCGGCCGCGGGACAAGGCGAAAGTGGAGGCAGCGGTTCGCATTGTCGAGCGCTGGTTGCTTGGCCGAATGCG
CCACCGCGTCTTCTACAGCCTTGCCGACGTCAATGCGGCAATCATGGAATTGCTCGCCGATCTCAACGACACCCGTGTTCTGCGTCGTGTCGGGCGCACA
AGGCGACAGTTGTTTGAAGAGATCGACTATCCGGCCCTGCGGCCGCTTGCCGTCGAACGATACGTCTTTGCTGAATGGAAGATACGCCGGGCTGGGCTCG
ATTATCATGTCGATATCGACAAGCACTATTACTCCGTGCCCTATCGTTTTGCCCGTGAGCAAGTCGAGGCACGCATCACCGCCAATACCATCGAGATCTT
CTACAAGGGCGAGCGGATTGCCGCCCACCGGCGTTCGAGCGGCAATGGCAAGCACACGACAACTCCCGAGCACATGCCATCATCCCATCGCCGCTTTGCC
GACTGGACGATAGAGCGCATTAGCCGCGAGGCGTCGGCAATCGGATCGGACGTTGCATTGCTCTGCGAGCGTATTCTCGCTGATCGGCCGCATCCGGAAC
AGGGCTACAGAGCCTGCCTGGGCATTATCCGCCTCGTCAAAGCATTCGAACGCGAGAGGGTCAACGCGGCCTGCGGCCGAGCATTGGAAATCGGCGCTCG
AACCTATGGATCGGTGCGCTCCATTCTCGACAATCACCTCGACCGATCTTCGTCATCAAGCACAGCATCACCCGAGCCGATCAATCACTCCAACATCCGC
GGCCCCCGCTATTACCACTGAGGAGACGACATATGCTTGCACATCCCACCCTTGATAAATTGAATGCCATGGGCCTGACCGGCATGGCCAAGGCGTTCAA
CGAACTGATCAGCAACGGCGAGAGCGAACAACTCTCCCATGCCGAATGGCTCGGGCTGCTGCTCGAACGAGAATGGAGCTCGCGCCACGATCGCAAGCTT
GCCGCCCGTCTGCGGTTTGCCAAACTGCGCCACCATGCTGTGCCTGAGGATGTCGATTACCGCAGCGAGCGCGGTCTCGATCGGGCGCTGTTCATGAAGC
TGATCGGCGGCGACTGGATCGATGCCCACGACAACCTCGCGATCTGCGGGCCATCTGGCGTCGGAAAAAGCTGGTTGGCCTGTGCGCTCGGGCACAAGGC
TTGCCGCGATGATCGCTCGGTTCTCTATCAGCGCGTGCCGCGGCTGTTTGCCAATCTTGCTCTCGCTCACGGCGATGGCCGCTATGCAAGGCTGCAGCGA
ACCCTCGGGCACGTCCAGCTCTTGATCCTCGATGACTGGGGTCTGGAACCGCTCAACGAGCAGGCTCGCCACGACCTTCTGGAGATCCTCGAGGATCGCT
ACGGCCGCCGCTCGACAATCATTACCAGTCAGCTTCCGGTATCAGCCTGGCATGAGATCATCGGCAACCCAACCTACGCCGATGCCATCCTCGATCGCCT
CGTTCACAACGCCCATCGCATAGACCTATCCGGGGAAAGCTTGCGGCGAAATCAGCGCCGGAAATCTTGACTCGCTACACGAATGAACTGACAACAATCA
CTGCCAGCAGGACCCCAGCCTCAGGGGGGCGAGATCATCCCGGAATCCCGGGGCGCAATCATCTCGGAACAAAGGGGCGGCTTCATCGGAATCGGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1527 bp | 508 aa | 195 | 1721 | + | No |
Chemistry : DDE
ORF sequence :
MRRVREILRYRFEEGLGHKSIAVRVGTAPSTVRETLRRLERAGLSRPLGDDVSDAVLEAALYKAAGTKTGHRRSVEPDWAHVHRELKRKHVTLQILWDEY
IGLHPDGYRYSRYCDLYRAWAVKLPVTMRQDHAAGEKLFVDYAGDTVTVVVDRLSGKTRQAHLFVAVLGASSLSFAHARWSETLPDWIECHLLALEAFGG
APALLVPDNAKVAVIKACHFDPQVNRTYAGMAAHYGSSVLPTRPRRPRDKAKVEAAVRIVERWLLGRMRHRVFYSLADVNAAIMELLADLNDTRVLRRVG
RTRRQLFEEIDYPALRPLAVERYVFAEWKIRRAGLDYHVDIDKHYYSVPYRFAREQVEARITANTIEIFYKGERIAAHRRSSGNGKHTTTPEHMPSSHRR
FADWTIERISREASAIGSDVALLCERILADRPHPEQGYRACLGIIRLVKAFERERVNAACGRALEIGARTYGSVRSILDNHLDRSSSSSTASPEPINHSN
IRGPRYYH
IGLHPDGYRYSRYCDLYRAWAVKLPVTMRQDHAAGEKLFVDYAGDTVTVVVDRLSGKTRQAHLFVAVLGASSLSFAHARWSETLPDWIECHLLALEAFGG
APALLVPDNAKVAVIKACHFDPQVNRTYAGMAAHYGSSVLPTRPRRPRDKAKVEAAVRIVERWLLGRMRHRVFYSLADVNAAIMELLADLNDTRVLRRVG
RTRRQLFEEIDYPALRPLAVERYVFAEWKIRRAGLDYHVDIDKHYYSVPYRFAREQVEARITANTIEIFYKGERIAAHRRSSGNGKHTTTPEHMPSSHRR
FADWTIERISREASAIGSDVALLCERILADRPHPEQGYRACLGIIRLVKAFERERVNAACGRALEIGARTYGSVRSILDNHLDRSSSSSTASPEPINHSN
IRGPRYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
738 bp | 245 aa | 1733 | 2470 | + | No |
AG : IS21 helper
ORF sequence :
MLAHPTLDKLNAMGLTGMAKAFNELISNGESEQLSHAEWLGLLLEREWSSRHDRKLAARLRFAKLRHHAVPEDVDYRSERGLDRALFMKLIGGDWIDAHD
NLAICGPSGVGKSWLACALGHKACRDDRSVLYQRVPRLFANLALAHGDGRYARLQRTLGHVQLLILDDWGLEPLNEQARHDLLEILEDRYGRRSTIITSQ
LPVSAWHEIIGNPTYADAILDRLVHNAHRIDLSGESLRRNQRRKS
NLAICGPSGVGKSWLACALGHKACRDDRSVLYQRVPRLFANLALAHGDGRYARLQRTLGHVQLLILDDWGLEPLNEQARHDLLEILEDRYGRRSTIITSQ
LPVSAWHEIIGNPTYADAILDRLVHNAHRIDLSGESLRRNQRRKS
Blast result :
Comments
ISRel16 orfA (the transposase) is 65% aa similar to ISSpu5, and orfB (helper of transposition) is 74% aa similar to ISPpu7.
References