ISSpu23

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAWY01000002 ND Shewanella putrefaciens
Shewanella putrefaciens 200
DNA section
IS Length : 1097 bp

Ends


IR Length : 16/25

IRL : TACCCGTGATCAATGAAGATGCTTGATTTTCAGTGAAATGAGGATCAAGC
IRR : TACCCAATCAACCTGAAGATGCGTGGGTAAAGAGCTGAAAATTATCATTG

Insertion site


Left flankDirect repeatRight flankDR Length
TCGCTAAATATATAGTCCGAAA2
AGTGAGCATATATATCCTGTGT2
AATCGATACCTAGATCGGCTTC2
CAAGTGGATCTATACGCGTTCG2
ATGGTGTATTTAAGACATGCTA2
TGCAGAGTTATAGAGCGACTTT2

DNA sequence

TACCCGTGATCAATGAAGATGCTTGATTTTCAGTGAAATGAGGATCAAGCTAACGATTATGAAACTACTCCTTACTCCTGAACAAAAACAAGTCCTAGAG
ACCCAGCATGCTCAAACGCGTGACGGGCGTATTCGTGACCGCATCAAAGCAGTACTGCTTGCATCCGAAGGCTGGACCCCGGCAATGATTTCTCAAGCAT
TACGCATTCATGAAAGCACTGTACGTAATCACCTTGCCGATTACACCTTGTCAGAGAAGCTCAAGCCTGAAAATGGCGGTTCACAAAGCCTGTTAACTGC
AGAGCAAATCGCAGAATTAATTGCCCATTTAACTCAGCATACTTATCACCACAACAAGCAAATCGTAGCCTATGTATTGGAGCAATATGGCGTTCAATAT
ACGGTAGCAGGGATGCACAAATGGCTTCGCAAAAACGGCTTTAGCTACAAGAAGCCCAAAGGCGTACCGCATAAGTTTGATACGGCAAAGCAACAGGCTT
TTGTTGAGGCTTATGAGGCACTCAAAGCGCATTGCGGTGAGGATGAGCGCATTTTATTTATGGATGCCGTACATCCGACTCAGGCAACCAAAATCTCACA
CGGCTGGATACGAACTGGGCAAGACAAAGCCATAGAAACCACCGGCAGTCGTACACGGCTAAACCTGATTGGCGCGTTGGAGCTCAATAATATTGCCAGT
GCAGTGGTCAATGAATATGAATGGGTAAACAGCGAAAGCATAGTGCAGTTTTTCGGGCAATTAAGAGACAAATACCCACAAACTCAGAAGCTACATCTTA
TTTTGGATGGTGCTGGTTATCACCGAGCGGCGATAGTGAAGAATGCTGCAATTTCGCACAATATTGAGTTGCATTATTTACCGCCTTACAGCCCGAACCT
CAATCCGATAGAAAGACTGTGGAAGGTCATGAATGAGCACGCGAGGAACAGCGTGTACTTCAAAAATAAGCGAGATTTCAGGTCCGCACTGGATAAATTT
TTCAAAGAAACATTACCCGATATTGGTGAAAGTTTAGCGTCGCGGATCAATGATAATTTTCAGCTCTTTACCCACGCATCTTCAGGTTGATTGGGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa591090+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKLLLTPEQKQVLETQHAQTRDGRIRDRIKAVLLASEGWTPAMISQALRIHESTVRNHLADYTLSEKLKPENGGSQSLLTAEQIAELIAHLTQHTYHHNK
QIVAYVLEQYGVQYTVAGMHKWLRKNGFSYKKPKGVPHKFDTAKQQAFVEAYEALKAHCGEDERILFMDAVHPTQATKISHGWIRTGQDKAIETTGSRTR
LNLIGALELNNIASAVVNEYEWVNSESIVQFFGQLRDKYPQTQKLHLILDGAGYHRAAIVKNAAISHNIELHYLPPYSPNLNPIERLWKVMNEHARNSVY
FKNKRDFRSALDKFFKETLPDIGESLASRINDNFQLFTHASSG

 

Blast result :
Comments
The ISSpu23 transposase has 65% identity to that encoded by ISVch6.
References
1] Romine M. (2010) Direct submission.