ISSpu23
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAWY01000002 | ND | Shewanella putrefaciens | Shewanella putrefaciens 200 |
DNA section
IS Length : 1097 bp
Ends
IR Length : 16/25
IRL : TACCCGTGATCAATGAAGATGCTTGATTTTCAGTGAAATGAGGATCAAGC
IRR : TACCCAATCAACCTGAAGATGCGTGGGTAAAGAGCTGAAAATTATCATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGCTAAATA | TA | TAGTCCGAAA | 2 |
AGTGAGCATA | TA | TATCCTGTGT | 2 |
AATCGATACC | TA | GATCGGCTTC | 2 |
CAAGTGGATC | TA | TACGCGTTCG | 2 |
ATGGTGTATT | TA | AGACATGCTA | 2 |
TGCAGAGTTA | TA | GAGCGACTTT | 2 |
DNA sequence
TACCCGTGATCAATGAAGATGCTTGATTTTCAGTGAAATGAGGATCAAGCTAACGATTATGAAACTACTCCTTACTCCTGAACAAAAACAAGTCCTAGAG
ACCCAGCATGCTCAAACGCGTGACGGGCGTATTCGTGACCGCATCAAAGCAGTACTGCTTGCATCCGAAGGCTGGACCCCGGCAATGATTTCTCAAGCAT
TACGCATTCATGAAAGCACTGTACGTAATCACCTTGCCGATTACACCTTGTCAGAGAAGCTCAAGCCTGAAAATGGCGGTTCACAAAGCCTGTTAACTGC
AGAGCAAATCGCAGAATTAATTGCCCATTTAACTCAGCATACTTATCACCACAACAAGCAAATCGTAGCCTATGTATTGGAGCAATATGGCGTTCAATAT
ACGGTAGCAGGGATGCACAAATGGCTTCGCAAAAACGGCTTTAGCTACAAGAAGCCCAAAGGCGTACCGCATAAGTTTGATACGGCAAAGCAACAGGCTT
TTGTTGAGGCTTATGAGGCACTCAAAGCGCATTGCGGTGAGGATGAGCGCATTTTATTTATGGATGCCGTACATCCGACTCAGGCAACCAAAATCTCACA
CGGCTGGATACGAACTGGGCAAGACAAAGCCATAGAAACCACCGGCAGTCGTACACGGCTAAACCTGATTGGCGCGTTGGAGCTCAATAATATTGCCAGT
GCAGTGGTCAATGAATATGAATGGGTAAACAGCGAAAGCATAGTGCAGTTTTTCGGGCAATTAAGAGACAAATACCCACAAACTCAGAAGCTACATCTTA
TTTTGGATGGTGCTGGTTATCACCGAGCGGCGATAGTGAAGAATGCTGCAATTTCGCACAATATTGAGTTGCATTATTTACCGCCTTACAGCCCGAACCT
CAATCCGATAGAAAGACTGTGGAAGGTCATGAATGAGCACGCGAGGAACAGCGTGTACTTCAAAAATAAGCGAGATTTCAGGTCCGCACTGGATAAATTT
TTCAAAGAAACATTACCCGATATTGGTGAAAGTTTAGCGTCGCGGATCAATGATAATTTTCAGCTCTTTACCCACGCATCTTCAGGTTGATTGGGTA
ACCCAGCATGCTCAAACGCGTGACGGGCGTATTCGTGACCGCATCAAAGCAGTACTGCTTGCATCCGAAGGCTGGACCCCGGCAATGATTTCTCAAGCAT
TACGCATTCATGAAAGCACTGTACGTAATCACCTTGCCGATTACACCTTGTCAGAGAAGCTCAAGCCTGAAAATGGCGGTTCACAAAGCCTGTTAACTGC
AGAGCAAATCGCAGAATTAATTGCCCATTTAACTCAGCATACTTATCACCACAACAAGCAAATCGTAGCCTATGTATTGGAGCAATATGGCGTTCAATAT
ACGGTAGCAGGGATGCACAAATGGCTTCGCAAAAACGGCTTTAGCTACAAGAAGCCCAAAGGCGTACCGCATAAGTTTGATACGGCAAAGCAACAGGCTT
TTGTTGAGGCTTATGAGGCACTCAAAGCGCATTGCGGTGAGGATGAGCGCATTTTATTTATGGATGCCGTACATCCGACTCAGGCAACCAAAATCTCACA
CGGCTGGATACGAACTGGGCAAGACAAAGCCATAGAAACCACCGGCAGTCGTACACGGCTAAACCTGATTGGCGCGTTGGAGCTCAATAATATTGCCAGT
GCAGTGGTCAATGAATATGAATGGGTAAACAGCGAAAGCATAGTGCAGTTTTTCGGGCAATTAAGAGACAAATACCCACAAACTCAGAAGCTACATCTTA
TTTTGGATGGTGCTGGTTATCACCGAGCGGCGATAGTGAAGAATGCTGCAATTTCGCACAATATTGAGTTGCATTATTTACCGCCTTACAGCCCGAACCT
CAATCCGATAGAAAGACTGTGGAAGGTCATGAATGAGCACGCGAGGAACAGCGTGTACTTCAAAAATAAGCGAGATTTCAGGTCCGCACTGGATAAATTT
TTCAAAGAAACATTACCCGATATTGGTGAAAGTTTAGCGTCGCGGATCAATGATAATTTTCAGCTCTTTACCCACGCATCTTCAGGTTGATTGGGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 59 | 1090 | + | No |
Chemistry : DDE
ORF sequence :
MKLLLTPEQKQVLETQHAQTRDGRIRDRIKAVLLASEGWTPAMISQALRIHESTVRNHLADYTLSEKLKPENGGSQSLLTAEQIAELIAHLTQHTYHHNK
QIVAYVLEQYGVQYTVAGMHKWLRKNGFSYKKPKGVPHKFDTAKQQAFVEAYEALKAHCGEDERILFMDAVHPTQATKISHGWIRTGQDKAIETTGSRTR
LNLIGALELNNIASAVVNEYEWVNSESIVQFFGQLRDKYPQTQKLHLILDGAGYHRAAIVKNAAISHNIELHYLPPYSPNLNPIERLWKVMNEHARNSVY
FKNKRDFRSALDKFFKETLPDIGESLASRINDNFQLFTHASSG
QIVAYVLEQYGVQYTVAGMHKWLRKNGFSYKKPKGVPHKFDTAKQQAFVEAYEALKAHCGEDERILFMDAVHPTQATKISHGWIRTGQDKAIETTGSRTR
LNLIGALELNNIASAVVNEYEWVNSESIVQFFGQLRDKYPQTQKLHLILDGAGYHRAAIVKNAAISHNIELHYLPPYSPNLNPIERLWKVMNEHARNSVY
FKNKRDFRSALDKFFKETLPDIGESLASRINDNFQLFTHASSG
Blast result :
Comments
The ISSpu23 transposase has 65% identity to that encoded by ISVch6.
References
1] Romine M. (2010) Direct submission.