ISEc33
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JF785549 | ND | Escherichia coli | Escherichia coli |
DNA section
IS Length : 1153 bp
Ends
IR Length : 15/17
IRL : AATAGCTGCGCGGAATAGTAGATCACTGAAAGGGAACTCAGCCCGGATTG
IRR : AATAGCTGCGCCTAATACCGCTACACTTTTGCCTGACCATGTTTTCCTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGCCTTTC | TA | GGACGAGTAT | 2 |
DNA sequence
AATAGCTGCGCGGAATAGTAGATCACTGAAAGGGAACTCAGCCCGGATTGTGCGATCTGATCAATCGCCAAACCAACCAAAATCACCAACCGGACTGAGC
GATGCCGATCATAGTACCAATACCCCGTGGCGAACGACGCCTGATGCAGAAAGCTATTCATAAAACGCGTGATAAAAATCATGCCCGCAGACTCACGGCC
ATGCTAATGCTTCATCGGGGTGAACGGGTCAGCGATGTTGCCAGAACTCTCTGTTGTGCCCGTTCATCCGTTGGTCGCTGGATTAACTGGTTTACGCACT
CAGGTATTGAAGGCCTGAAATCCTTACCCGCAGGGCGCTCCCGACGCTGGCCTTTTGAACATATCTGCACCCTGTTACGTGAGCTGATAAAGCATTCTCC
CGGCGATTTTGGTTATCAACGTTCACGCTGGAGCACCGAATTACTGGCAATAAAAATCAATGAGATAACCGGTTGCCAGTTACATGCAGGAACCGTTCGC
CGCTGGTTGCCATCTGCGGGGCTTGTATGGCGAAGGGCCGCGCCAACTCTGCGTATCCGTGACCCACATAAAGATGAAAAGATGGCGGTAATCCACAAAG
CGCTGGATGAATGCAGCGCAGAGCATCCGGTATTTTATGAAGATGAAGTGGATATCCACCTTAATCCTAAAATCGGTGCGGACTGGCAGTTGCGCGGACA
GCAGAAACGGGTAGTGACGCCGGGGCAGAACGAAAAATACTATCTGGCCGGCGCACTGCACAGTGGCACGGGTAAAGTCAGCTACGTGGGCGGCAACAGC
AAAAGTTCAGCGCTGTTTATCGCTCTGCTGAAGCACCTGAAAGCCACTTACCGGCGGGCGAAAACAATCACGCTGATCGTTGATAACTACATTATCCATA
AAAGCCGCGAAACACAGCGCTGGTTGAAAGCAAATCCCAAGTTCAGGGTAATTTACCAGCCGGTTTACTCGCCGTGGGTGAATCATGTGGAACGGCTATG
GCAGGCACTTCATGACACGATAACCCGTAATCATCAGTGCCGCTCAATGTGGCAGTTACTGAAAAAGGTCCGCCATTTTATGGAAACCGCCAGCCCATTC
CCCGGAGGAAAACATGGTCAGGCAAAAGTGTAGCGGTATTAGGCGCAGCTATT
GATGCCGATCATAGTACCAATACCCCGTGGCGAACGACGCCTGATGCAGAAAGCTATTCATAAAACGCGTGATAAAAATCATGCCCGCAGACTCACGGCC
ATGCTAATGCTTCATCGGGGTGAACGGGTCAGCGATGTTGCCAGAACTCTCTGTTGTGCCCGTTCATCCGTTGGTCGCTGGATTAACTGGTTTACGCACT
CAGGTATTGAAGGCCTGAAATCCTTACCCGCAGGGCGCTCCCGACGCTGGCCTTTTGAACATATCTGCACCCTGTTACGTGAGCTGATAAAGCATTCTCC
CGGCGATTTTGGTTATCAACGTTCACGCTGGAGCACCGAATTACTGGCAATAAAAATCAATGAGATAACCGGTTGCCAGTTACATGCAGGAACCGTTCGC
CGCTGGTTGCCATCTGCGGGGCTTGTATGGCGAAGGGCCGCGCCAACTCTGCGTATCCGTGACCCACATAAAGATGAAAAGATGGCGGTAATCCACAAAG
CGCTGGATGAATGCAGCGCAGAGCATCCGGTATTTTATGAAGATGAAGTGGATATCCACCTTAATCCTAAAATCGGTGCGGACTGGCAGTTGCGCGGACA
GCAGAAACGGGTAGTGACGCCGGGGCAGAACGAAAAATACTATCTGGCCGGCGCACTGCACAGTGGCACGGGTAAAGTCAGCTACGTGGGCGGCAACAGC
AAAAGTTCAGCGCTGTTTATCGCTCTGCTGAAGCACCTGAAAGCCACTTACCGGCGGGCGAAAACAATCACGCTGATCGTTGATAACTACATTATCCATA
AAAGCCGCGAAACACAGCGCTGGTTGAAAGCAAATCCCAAGTTCAGGGTAATTTACCAGCCGGTTTACTCGCCGTGGGTGAATCATGTGGAACGGCTATG
GCAGGCACTTCATGACACGATAACCCGTAATCATCAGTGCCGCTCAATGTGGCAGTTACTGAAAAAGGTCCGCCATTTTATGGAAACCGCCAGCCCATTC
CCCGGAGGAAAACATGGTCAGGCAAAAGTGTAGCGGTATTAGGCGCAGCTATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 102 | 1133 | + | No |
Chemistry : DDE
ORF sequence :
MPIIVPIPRGERRLMQKAIHKTRDKNHARRLTAMLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPAGRSRRWPFEHICTLLRELIKHSP
GDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIRDPHKDEKMAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQRWLKANPKFRVIYQPVYSPWVNHVERLW
QALHDTITRNHQCRSMWQLLKKVRHFMETASPFPGGKHGQAKV
GDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIRDPHKDEKMAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQRWLKANPKFRVIYQPVYSPWVNHVERLW
QALHDTITRNHQCRSMWQLLKKVRHFMETASPFPGGKHGQAKV
Blast result :
Comments
ISEc33 is 96% aa similar to IS630.
References
1] Poirel L. (2010) Direct submission.
2] Poirel,L., Bonnin,R.A. and Nordmann,P. (2011) Antimicrob. Agents Chemother. 55 (9), 4224-4229.
2] Poirel,L., Bonnin,R.A. and Nordmann,P. (2011) Antimicrob. Agents Chemother. 55 (9), 4224-4229.