ISEc33

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JF785549 ND Escherichia coli
Escherichia coli
DNA section
IS Length : 1153 bp

Ends


IR Length : 15/17

IRL : AATAGCTGCGCGGAATAGTAGATCACTGAAAGGGAACTCAGCCCGGATTG
IRR : AATAGCTGCGCCTAATACCGCTACACTTTTGCCTGACCATGTTTTCCTCC

Insertion site


Left flankDirect repeatRight flankDR Length
AACGCCTTTCTAGGACGAGTAT2

DNA sequence

AATAGCTGCGCGGAATAGTAGATCACTGAAAGGGAACTCAGCCCGGATTGTGCGATCTGATCAATCGCCAAACCAACCAAAATCACCAACCGGACTGAGC
GATGCCGATCATAGTACCAATACCCCGTGGCGAACGACGCCTGATGCAGAAAGCTATTCATAAAACGCGTGATAAAAATCATGCCCGCAGACTCACGGCC
ATGCTAATGCTTCATCGGGGTGAACGGGTCAGCGATGTTGCCAGAACTCTCTGTTGTGCCCGTTCATCCGTTGGTCGCTGGATTAACTGGTTTACGCACT
CAGGTATTGAAGGCCTGAAATCCTTACCCGCAGGGCGCTCCCGACGCTGGCCTTTTGAACATATCTGCACCCTGTTACGTGAGCTGATAAAGCATTCTCC
CGGCGATTTTGGTTATCAACGTTCACGCTGGAGCACCGAATTACTGGCAATAAAAATCAATGAGATAACCGGTTGCCAGTTACATGCAGGAACCGTTCGC
CGCTGGTTGCCATCTGCGGGGCTTGTATGGCGAAGGGCCGCGCCAACTCTGCGTATCCGTGACCCACATAAAGATGAAAAGATGGCGGTAATCCACAAAG
CGCTGGATGAATGCAGCGCAGAGCATCCGGTATTTTATGAAGATGAAGTGGATATCCACCTTAATCCTAAAATCGGTGCGGACTGGCAGTTGCGCGGACA
GCAGAAACGGGTAGTGACGCCGGGGCAGAACGAAAAATACTATCTGGCCGGCGCACTGCACAGTGGCACGGGTAAAGTCAGCTACGTGGGCGGCAACAGC
AAAAGTTCAGCGCTGTTTATCGCTCTGCTGAAGCACCTGAAAGCCACTTACCGGCGGGCGAAAACAATCACGCTGATCGTTGATAACTACATTATCCATA
AAAGCCGCGAAACACAGCGCTGGTTGAAAGCAAATCCCAAGTTCAGGGTAATTTACCAGCCGGTTTACTCGCCGTGGGTGAATCATGTGGAACGGCTATG
GCAGGCACTTCATGACACGATAACCCGTAATCATCAGTGCCGCTCAATGTGGCAGTTACTGAAAAAGGTCCGCCATTTTATGGAAACCGCCAGCCCATTC
CCCGGAGGAAAACATGGTCAGGCAAAAGTGTAGCGGTATTAGGCGCAGCTATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa1021133+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIIVPIPRGERRLMQKAIHKTRDKNHARRLTAMLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPAGRSRRWPFEHICTLLRELIKHSP
GDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIRDPHKDEKMAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQRWLKANPKFRVIYQPVYSPWVNHVERLW
QALHDTITRNHQCRSMWQLLKKVRHFMETASPFPGGKHGQAKV

 

Blast result :
Comments
ISEc33 is 96% aa similar to IS630.
References
1] Poirel L. (2010) Direct submission.
2] Poirel,L., Bonnin,R.A. and Nordmann,P. (2011) Antimicrob. Agents Chemother. 55 (9), 4224-4229.