ISfinder Mirror Site

ISGeob4

Family IS5
Group ISL2

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_013757	ND	Geodermatophilus obscurus	Geodermatophilus obscurus DSM 43160

DNA section

IS Length : 982 bp

Ends

IR Length : 8/11

IRL : GAGCCTTTCCCGGTAGCGGATGAGCCGCAGGTCAGGAGCGACACACCGAC
IRR : GAGGTTTTCTCAACGGATTGGTCGTTCGGCGTTGGTCAGGACAAGCGCTG

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CACTTGACTC	AAT	GCACGATTTC	3

DNA sequence

GAGCCTTTCCCGGTAGCGGATGAGCCGCAGGTCAGGAGCGACACACCGACGGCGGCCGGATGACCGAAGACGACGCAGGACCTCGGTAGGCGGGACGTCT
TCTCACAGACCGTCTTCCCCACCCGAGGTCCTGCTGTGTCCGATCCTGTCACCTACACACGCCGTGCTCCCCGTCGAAGAGCCCACCGTGCAATTCGTGT
CGGCACTGCTGGCCGCCGACCGGCGCCGACGCCGCACCCGGCCTAAGCGCCGGGCGCTGGGCTGCTACCGGCAGGCGGTGCTGGTGCTGCGCTGGTTCCT
CGACGGCACCCGGCTGGCCCAGCTGGCCGTCGACCACCGAATCGGCCGCTCGACGGCCTACCGGTATCTGCACGAGGGCATCGACGTCCTCGCCGCGGCC
GCACCCGCGCTGCGCGGTGCACTGCTGGCCGCCCGCGCCGCCGGCTATGCGCACGTGACGGTGGACGGGACGCTGATCCGCACCGACGGGTGCCGGACCA
AGAATCCCGATACCGGCCACGACCTGTGGTTCTCCGGCAAGCACAAGGCGCACGGCGGCAACGTGCAGATCGTCAGCGACCCCGACGGGCATCCGGTCGT
CGTCTCCGAGGTCGAGCCCGGCTCGGTGCATGACCTGGCCGCCGCCCGTGCCACCGGGTTCCTCGGCGCGCTGCACGCCGCGGCCGCCCTGCTCGGGCTG
CCCGCGCTGGCCGCGCTGGCCGCGCTGGCCGACAAGGGCTACCACGGTGCCGGCATCGGCGTGCTGACGCCGACCAAGGGCCGCGGCCTGCACTCGAACA
ACCTCATCCGCAACCGGCTCATCGGCTGCTTGCGTGCCCCGGGCGAACGCGGGATCGCGCTGCTCAAGACCCGATGGAAGGCGCTCGGCCGTATCCGCCT
GTGCCCACAGCGGATCGGCGCGATCGCCAAGGCAGCGCTTGTCCTGACCAACGCCGAACGACCAATCCGTTGAGAAAACCTC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
810 bp	269 aa	164	973	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

VLPVEEPTVQFVSALLAADRRRRRTRPKRRALGCYRQAVLVLRWFLDGTRLAQLAVDHRIGRSTAYRYLHEGIDVLAAAAPALRGALLAARAAGYAHVTV
DGTLIRTDGCRTKNPDTGHDLWFSGKHKAHGGNVQIVSDPDGHPVVVSEVEPGSVHDLAAARATGFLGALHAAAALLGLPALAALAALADKGYHGAGIGV
LTPTKGRGLHSNNLIRNRLIGCLRAPGERGIALLKTRWKALGRIRLCPQRIGAIAKAALVLTNAERPIR

Blast result :

Comments

ISGeob4 is 75% to ISGeob3.

References

1] ISfinder annotation (2010)

2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.