ISGeob2
- Family IS5
- Group ISL2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013757 | ND | Geodermatophilus obscurus | Geodermatophilus obscurus DSM 43160 |
DNA section
IS Length : 968 bp
Ends
IR Length : 17/19
IRL : GAGGACTTCTCAACGGATTCGCGTAGGAGTGCATTGCTGAACGCCGAGTG
IRR : GAGGTTTTCTCAACGGATTGGTCGCTCGGCGGTGGTAAGGACGAGGGCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGAAGACATT | AGTGGTGGCG | 0 |
DNA sequence
GAGGACTTCTCAACGGATTCGCGTAGGAGTGCATTGCTGAACGCCGAGTGAGCAGGTCAGGGGCTGGACGGCGACTCCGCTGCAAAGGGCGTAGGGCCCG
GCAGATGATGGCGTCGACCAAGAACGACCCTCATCCGCACGGACCCCACGTGATCACTTACTCTGCCACGCTCGACGTGCCCGAGGCCACCGCCACCCTG
CTCACCGATCTGCTGATCGCCGAACGCCGCCGCCGCGGCACCGGCATCGGCGCCCGCGCCGCCTCCGCCCGCATCCAGGCGGTGCTGGTGCTGCGCTGGT
TCCGCCAGGACACCGGCATGCCGACCCTGGCCCGCGACGCCGGCATCTCGCAGGCCACCGGCTACCGCTATCTGCACGAGGGCATCGATGTGCTCGCCGA
CCGAGCTCCCGACCTGCACCAGGTGCTCCAGGCCGGACGGGCCGCCGGCTGGAGCCACGTCACCCTCGACGGCACTCTCGTGCGTACCGATCGCTGCCGG
GTGAGGAACCCCGAGTCCGGCCACGACCTGTGGTACTCGGGCAAGCACCGCGCCCACGGCGGCAACGTGCAGGTGGTCTGCGACCCGGCCGCCTTCCCCG
TGGCCGTCTCCGACGTCCAGCCCGGCTCGATGCACGACCTCGCCGCCGCCCGGGCCACCGGCTTCCTCGCTGCTCTGCAGGTCGCGGCCGCCCGGCTGGG
CCTACCCGCCCTGGCCGACAAGGGCTACGACGGCGCGGGCATCGGCATCCACACGCCGGCAAAGGGCGCCAACCTGGCCCCGAGCAGCGCCTGCCGCAAC
CAGCTGCTGACCCGGCTGCGCGCCGAAGGGGAGCGCGGTATCGCCCTGCTCAAGACCCGATGGAAAGCGCTGCGGCGCATCCGCCTGTGTCCTCAGCGCA
TCGGTGCCATCGTCGCCGCAGCCCTCGTCCTTACCACCGCCGAGCGACCAATCCGTTGAGAAAACCTC
GCAGATGATGGCGTCGACCAAGAACGACCCTCATCCGCACGGACCCCACGTGATCACTTACTCTGCCACGCTCGACGTGCCCGAGGCCACCGCCACCCTG
CTCACCGATCTGCTGATCGCCGAACGCCGCCGCCGCGGCACCGGCATCGGCGCCCGCGCCGCCTCCGCCCGCATCCAGGCGGTGCTGGTGCTGCGCTGGT
TCCGCCAGGACACCGGCATGCCGACCCTGGCCCGCGACGCCGGCATCTCGCAGGCCACCGGCTACCGCTATCTGCACGAGGGCATCGATGTGCTCGCCGA
CCGAGCTCCCGACCTGCACCAGGTGCTCCAGGCCGGACGGGCCGCCGGCTGGAGCCACGTCACCCTCGACGGCACTCTCGTGCGTACCGATCGCTGCCGG
GTGAGGAACCCCGAGTCCGGCCACGACCTGTGGTACTCGGGCAAGCACCGCGCCCACGGCGGCAACGTGCAGGTGGTCTGCGACCCGGCCGCCTTCCCCG
TGGCCGTCTCCGACGTCCAGCCCGGCTCGATGCACGACCTCGCCGCCGCCCGGGCCACCGGCTTCCTCGCTGCTCTGCAGGTCGCGGCCGCCCGGCTGGG
CCTACCCGCCCTGGCCGACAAGGGCTACGACGGCGCGGGCATCGGCATCCACACGCCGGCAAAGGGCGCCAACCTGGCCCCGAGCAGCGCCTGCCGCAAC
CAGCTGCTGACCCGGCTGCGCGCCGAAGGGGAGCGCGGTATCGCCCTGCTCAAGACCCGATGGAAAGCGCTGCGGCGCATCCGCCTGTGTCCTCAGCGCA
TCGGTGCCATCGTCGCCGCAGCCCTCGTCCTTACCACCGCCGAGCGACCAATCCGTTGAGAAAACCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 855 bp | 284 aa | 105 | 959 | + | No |
Chemistry : DDE
ORF sequence :
MITYSATLDVPEATATLLTDLLIAERRRRGTGIGARAASARIQAVLVLRWFRQDTGMPTLARDAGISQATGYRYLHEGIDVLADRAPDLHQVLQAGRAAG
WSHVTLDGTLVRTDRCRVRNPESGHDLWYSGKHRAHGGNVQVVCDPAAFPVAVSDVQPGSMHDLAAARATGFLAALQVAAARLGLPALADKGYDGAGIGI
HTPAKGANLAPSSACRNQLLTRLRAEGERGIALLKTRWKALRRIRLCPQRIGAIVAAALVLTTAERPIR
WSHVTLDGTLVRTDRCRVRNPESGHDLWYSGKHRAHGGNVQVVCDPAAFPVAVSDVQPGSMHDLAAARATGFLAALQVAAARLGLPALADKGYDGAGIGI
HTPAKGANLAPSSACRNQLLTRLRAEGERGIALLKTRWKALRRIRLCPQRIGAIVAAALVLTTAERPIR
Blast result :
Comments
ISGeob2 is 71% aa similar to ISRhosp9.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.