ISFsp7
- Family IS5
- Group ISL2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007777 | ND | Frankia sp. | Frankia sp. CcI3 |
DNA section
IS Length : 1041 bp
Ends
IR Length : 30/39
IRL : GAGCCTTTCCCTGCAACGTTTGGTGACGCTCCGTGAGCGTCGCTGGGTGT
IRR : GAGCCTTTCCCGGTAACGATTCGTCACGTGACGTGATCGCAATGGTGTGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGAAGAGCAT | AGT | GATGCGAGCC | 3 |
| GTCCTTTGAG | ATT | GACCCCAAGG | 3 |
| GAAATGACCC | ACT | GTCCAGAGAG | 3 |
DNA sequence
GAGCCTTTCCCTGCAACGTTTGGTGACGCTCCGTGAGCGTCGCTGGGTGTGAGCGTCCCTGGGGGTGGAGACGATGAAGGCGCGGGGCTCCGGTAGGAAG
TTGTTCCGACCAAAGAGCAACTCCGAAGGAACCCCACGCCTCGATGAGTTTCACATACACCGCCGAGCTGCCGTTCGGCGATCACACCGTTTTCCGTCTG
GCGGGTCTTCTCGTGGCGGAGCGTCAACGTCGTGGTACCCGCAAGGGCACCCGGACGCTGTCCGCGTTGGAACAGGCCGTGATGGTCCTGCGCTGGTTCT
GTGACGGCACCAGGGCCAGGCGGCTCTTCTCCGATCATGGGGTGTCCCGGTCGGTGGGCTACCGCTACCTGCACGAGGGAGTCGCCGTGCTCGCCTGGCA
GGCCCCGGACCTGCGTGAAGCGCTGATGCGGGCCAGGGTCGCCGGCTACGAGCATCTCATCGTTGACGGCACGGTCATCGAGACCGACCGGCTACGCATG
CCCGGCCCGACCGAAGGCGTGGACCTGTGGTGGTCCGGCACGATCTCCAACCACGGTGGCAACATCCAGGTGCTCTCCGCCCCGGACGACGGCTGGCCAC
TGTGGGTCTCCGACGTGCGGCCCGGCCGCGAGCACGACTCGACCGCCCTGAAAGCCTCCGGGGCGCTGCCGGTTCTCGCCGAGTGGACCGCCGACCTGCA
CGAGGTGCTGTTCGACCTCGGCTACGAAGGGCTGGGCAACCCGGCCGGGCCGCTCGCGACCGCGTACAAGAAGCCCAAGGGCGGCACCCTCACCGACGAA
CAGAAAGCGCACAACCGGATCCACAACGCGCTACGCGCCGTCGGTGAACGCGCGAACGCCCTGCTCAAAGGCACCTTCCGACTCCTCCACAACATCACGA
TCGACCCCTGGAAGATCGGACTTGTCGTGAAAGCCGCCCTCGTCATCCTCCACACCGAGCACCGCAGAACCGCCTGACACCCAACACACCAACACACCAT
TGCGATCACGTCACGTGACGAATCGTTACCGGGAAAGGCTC
TTGTTCCGACCAAAGAGCAACTCCGAAGGAACCCCACGCCTCGATGAGTTTCACATACACCGCCGAGCTGCCGTTCGGCGATCACACCGTTTTCCGTCTG
GCGGGTCTTCTCGTGGCGGAGCGTCAACGTCGTGGTACCCGCAAGGGCACCCGGACGCTGTCCGCGTTGGAACAGGCCGTGATGGTCCTGCGCTGGTTCT
GTGACGGCACCAGGGCCAGGCGGCTCTTCTCCGATCATGGGGTGTCCCGGTCGGTGGGCTACCGCTACCTGCACGAGGGAGTCGCCGTGCTCGCCTGGCA
GGCCCCGGACCTGCGTGAAGCGCTGATGCGGGCCAGGGTCGCCGGCTACGAGCATCTCATCGTTGACGGCACGGTCATCGAGACCGACCGGCTACGCATG
CCCGGCCCGACCGAAGGCGTGGACCTGTGGTGGTCCGGCACGATCTCCAACCACGGTGGCAACATCCAGGTGCTCTCCGCCCCGGACGACGGCTGGCCAC
TGTGGGTCTCCGACGTGCGGCCCGGCCGCGAGCACGACTCGACCGCCCTGAAAGCCTCCGGGGCGCTGCCGGTTCTCGCCGAGTGGACCGCCGACCTGCA
CGAGGTGCTGTTCGACCTCGGCTACGAAGGGCTGGGCAACCCGGCCGGGCCGCTCGCGACCGCGTACAAGAAGCCCAAGGGCGGCACCCTCACCGACGAA
CAGAAAGCGCACAACCGGATCCACAACGCGCTACGCGCCGTCGGTGAACGCGCGAACGCCCTGCTCAAAGGCACCTTCCGACTCCTCCACAACATCACGA
TCGACCCCTGGAAGATCGGACTTGTCGTGAAAGCCGCCCTCGTCATCCTCCACACCGAGCACCGCAGAACCGCCTGACACCCAACACACCAACACACCAT
TGCGATCACGTCACGTGACGAATCGTTACCGGGAAAGGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 834 bp | 277 aa | 144 | 977 | + | No |
Chemistry : DDE
ORF sequence :
MSFTYTAELPFGDHTVFRLAGLLVAERQRRGTRKGTRTLSALEQAVMVLRWFCDGTRARRLFSDHGVSRSVGYRYLHEGVAVLAWQAPDLREALMRARVA
GYEHLIVDGTVIETDRLRMPGPTEGVDLWWSGTISNHGGNIQVLSAPDDGWPLWVSDVRPGREHDSTALKASGALPVLAEWTADLHEVLFDLGYEGLGNP
AGPLATAYKKPKGGTLTDEQKAHNRIHNALRAVGERANALLKGTFRLLHNITIDPWKIGLVVKAALVILHTEHRRTA
GYEHLIVDGTVIETDRLRMPGPTEGVDLWWSGTISNHGGNIQVLSAPDDGWPLWVSDVRPGREHDSTALKASGALPVLAEWTADLHEVLFDLGYEGLGNP
AGPLATAYKKPKGGTLTDEQKAHNRIHNALRAVGERANALLKGTFRLLHNITIDPWKIGLVVKAALVILHTEHRRTA
Blast result :
Comments
ISFsp7 is 93% aa similar to ISFsp2.
References
1] ISfinder annotation (2010)
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J., Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P. (2006) Direct submission GenBank.
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J., Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P. (2006) Direct submission GenBank.