ISSro1

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABYB01000091 ND Streptomyces roseosporus
Streptomyces roseosporus NRRL 15998
DNA section
IS Length : 897 bp

Ends


IR Length : 15/17

IRL : GAGCCTCTTTCATCCTGTGCTGGAGGGTGAAATGGGCTGGTCAGAGGGTG
IRR : GAGCCCATTTCATCCTGCATAGCTGCAGATCAGGAGGGTGTGGACGGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGAAGTCAATACTGACCACC0

DNA sequence

GAGCCTCTTTCATCCTGTGCTGGAGGGTGAAATGGGCTGGTCAGAGGGTGTGGTGACGAGGCAGGGCCCCTCGTCGTTGGCGTGGTGATTCCACTCATCA
CACCGGCGACCGAAGGGGCCCTGTTGGTTCCGTATCGAGCCACGCTCGACGTCCCGCACGAGCTCGTCGAGCATGTCGCCTGGCTGCTGGACGAGCATCG
TCGCACCCGAAACACACGCTGGCGCAAGCTCGGCTGCTTCGACCAGGCGCTGCTCACGCTGGTGCACCTACGGAAGAATGAGACGTTCTCGCAGCTCGGA
GCGGGTTTCGGGATATCCCAGGCCACCGCCTGGCGGTACGTCGACGAAACCTTGGATGTCCTGACCGGCTGGGCGCCCGGCCTCCATGAAGCCCTCACCG
GCCTCGGTGAAGGCGACCACGTCATCGTTGACGGCACCCTGATCCCCACCGGCCGCATCGCCGCCGACGAGCCGTACTACTCGCAGAAGCACCGCAAGCA
CGGCATGAACGTGCAGGTCATCGCCCGTCCCGACGGCACACCACTCTGGTTCTCACGCGCAACACCCGGCCGCACCCACGACCTGACCGCGGCCTGCGCA
CACGGCATCGTCCAGGCCTGCCTCACCCGACAGATCCTCGTGCTCGCGGACCGCGCCTATCAGGGTGCCGGCGCCACCGTCCGCACCCCGTACTACCGCC
ACCGCGAACAACCTGAGCACTACCAGCAGTTCAACCAGGACGATGCCCGGCTGAGAGCTCCGGACGAACGCGCCTTTGCCCAGTTGAAGTCCTGGCGGCT
ACTACGGCGAGCCAGATGCTCCACTCGCCGCATCGGCACCATCGTCCAAGCCGTCCACACCCTCCTGATCTGCAGCTATGCAGGATGAAATGGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
807 bp268 aa82888+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VVIPLITPATEGALLVPYRATLDVPHELVEHVAWLLDEHRRTRNTRWRKLGCFDQALLTLVHLRKNETFSQLGAGFGISQATAWRYVDETLDVLTGWAPG
LHEALTGLGEGDHVIVDGTLIPTGRIAADEPYYSQKHRKHGMNVQVIARPDGTPLWFSRATPGRTHDLTAACAHGIVQACLTRQILVLADRAYQGAGATV
RTPYYRHREQPEHYQQFNQDDARLRAPDERAFAQLKSWRLLRRARCSTRRIGTIVQAVHTLLICSYAG

 

Blast result :
Comments
ISSar1 is 60% aa similar to IS493.
References
1] ISfinder annotation (2010).

2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Godfrey,P., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.