ISSro1
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABYB01000091 | ND | Streptomyces roseosporus | Streptomyces roseosporus NRRL 15998 |
DNA section
IS Length : 897 bp
Ends
IR Length : 15/17
IRL : GAGCCTCTTTCATCCTGTGCTGGAGGGTGAAATGGGCTGGTCAGAGGGTG
IRR : GAGCCCATTTCATCCTGCATAGCTGCAGATCAGGAGGGTGTGGACGGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAAGTCAAT | ACTGACCACC | 0 |
DNA sequence
GAGCCTCTTTCATCCTGTGCTGGAGGGTGAAATGGGCTGGTCAGAGGGTGTGGTGACGAGGCAGGGCCCCTCGTCGTTGGCGTGGTGATTCCACTCATCA
CACCGGCGACCGAAGGGGCCCTGTTGGTTCCGTATCGAGCCACGCTCGACGTCCCGCACGAGCTCGTCGAGCATGTCGCCTGGCTGCTGGACGAGCATCG
TCGCACCCGAAACACACGCTGGCGCAAGCTCGGCTGCTTCGACCAGGCGCTGCTCACGCTGGTGCACCTACGGAAGAATGAGACGTTCTCGCAGCTCGGA
GCGGGTTTCGGGATATCCCAGGCCACCGCCTGGCGGTACGTCGACGAAACCTTGGATGTCCTGACCGGCTGGGCGCCCGGCCTCCATGAAGCCCTCACCG
GCCTCGGTGAAGGCGACCACGTCATCGTTGACGGCACCCTGATCCCCACCGGCCGCATCGCCGCCGACGAGCCGTACTACTCGCAGAAGCACCGCAAGCA
CGGCATGAACGTGCAGGTCATCGCCCGTCCCGACGGCACACCACTCTGGTTCTCACGCGCAACACCCGGCCGCACCCACGACCTGACCGCGGCCTGCGCA
CACGGCATCGTCCAGGCCTGCCTCACCCGACAGATCCTCGTGCTCGCGGACCGCGCCTATCAGGGTGCCGGCGCCACCGTCCGCACCCCGTACTACCGCC
ACCGCGAACAACCTGAGCACTACCAGCAGTTCAACCAGGACGATGCCCGGCTGAGAGCTCCGGACGAACGCGCCTTTGCCCAGTTGAAGTCCTGGCGGCT
ACTACGGCGAGCCAGATGCTCCACTCGCCGCATCGGCACCATCGTCCAAGCCGTCCACACCCTCCTGATCTGCAGCTATGCAGGATGAAATGGGCTC
CACCGGCGACCGAAGGGGCCCTGTTGGTTCCGTATCGAGCCACGCTCGACGTCCCGCACGAGCTCGTCGAGCATGTCGCCTGGCTGCTGGACGAGCATCG
TCGCACCCGAAACACACGCTGGCGCAAGCTCGGCTGCTTCGACCAGGCGCTGCTCACGCTGGTGCACCTACGGAAGAATGAGACGTTCTCGCAGCTCGGA
GCGGGTTTCGGGATATCCCAGGCCACCGCCTGGCGGTACGTCGACGAAACCTTGGATGTCCTGACCGGCTGGGCGCCCGGCCTCCATGAAGCCCTCACCG
GCCTCGGTGAAGGCGACCACGTCATCGTTGACGGCACCCTGATCCCCACCGGCCGCATCGCCGCCGACGAGCCGTACTACTCGCAGAAGCACCGCAAGCA
CGGCATGAACGTGCAGGTCATCGCCCGTCCCGACGGCACACCACTCTGGTTCTCACGCGCAACACCCGGCCGCACCCACGACCTGACCGCGGCCTGCGCA
CACGGCATCGTCCAGGCCTGCCTCACCCGACAGATCCTCGTGCTCGCGGACCGCGCCTATCAGGGTGCCGGCGCCACCGTCCGCACCCCGTACTACCGCC
ACCGCGAACAACCTGAGCACTACCAGCAGTTCAACCAGGACGATGCCCGGCTGAGAGCTCCGGACGAACGCGCCTTTGCCCAGTTGAAGTCCTGGCGGCT
ACTACGGCGAGCCAGATGCTCCACTCGCCGCATCGGCACCATCGTCCAAGCCGTCCACACCCTCCTGATCTGCAGCTATGCAGGATGAAATGGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
807 bp | 268 aa | 82 | 888 | + | No |
Chemistry : DDE
ORF sequence :
VVIPLITPATEGALLVPYRATLDVPHELVEHVAWLLDEHRRTRNTRWRKLGCFDQALLTLVHLRKNETFSQLGAGFGISQATAWRYVDETLDVLTGWAPG
LHEALTGLGEGDHVIVDGTLIPTGRIAADEPYYSQKHRKHGMNVQVIARPDGTPLWFSRATPGRTHDLTAACAHGIVQACLTRQILVLADRAYQGAGATV
RTPYYRHREQPEHYQQFNQDDARLRAPDERAFAQLKSWRLLRRARCSTRRIGTIVQAVHTLLICSYAG
LHEALTGLGEGDHVIVDGTLIPTGRIAADEPYYSQKHRKHGMNVQVIARPDGTPLWFSRATPGRTHDLTAACAHGIVQACLTRQILVLADRAYQGAGATV
RTPYYRHREQPEHYQQFNQDDARLRAPDERAFAQLKSWRLLRRARCSTRRIGTIVQAVHTLLICSYAG
Blast result :
Comments
ISSar1 is 60% aa similar to IS493.
References
1] ISfinder annotation (2010).
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Godfrey,P., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Godfrey,P., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.