ISHla5
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012028 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 chromosome 2 |
DNA section
IS Length : 1397 bp
Ends
IR Length : 15/16
IRL : CAGTACTTCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTG
IRR : CAGTACATCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGACCAATCT | ACGCTATGTT | 0 |
DNA sequence
CAGTACTTCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTGTCTAAAACCAAACAAGCAGACGGTGAGATCCACGAGGACCAGCTTCTTAA
CTTTCTCGTCAACCGCCTTGACGAGGAAGTTTCGCTCTCGTTAGCCAATAACGCTGAAATCACTGCTGAAGACATCTATGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCTGTCTCTACGCTCTGTGCGTCGAGCCAGAACTCACCCGCTGGGAACACGGTCCTCTACCATCTTCGGACGAAGTTCGAGCCGGAAC
GGCTCGAACGAGTCGCTAACACGCTCCTGCGAAAGGATCTCGATGAATTGCTCCCCGAACAGGTGGAGGTCGTTTCAGACCTCCACCTGCGGCCCTACTA
TGGAGACGAAGACGACACCGACGGTCTCTATCACTCCCAAGCGAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACACTACACGCTGGCGGTGCGCCGTCTGACCGACGGCGACACCGCCAGCAGTGTCCTCGCCGAGTTTCTTGGTCTCCTTGACGGCCTTGACCTCGACG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCATAACCACGCCTACGTCATGCCGGTCGTCCGCTGGGG
AAAGACGATCAAGCAAGAACTCTCGGAAGGCTGGAGTCGCGTGATTCAGCACGACATGACGGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCT
GTCTACATCGACTGTACCTACCAGAATGGGCGGTACGACGACCATGGTGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGAG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCGAGCTACCGACTTTCCGAGCAAAGTATTGCGACGACCTCGACACAGAATCCGGTCGTCCG
GTTGCTGTACGTTGTGGTAAGCCTGCTGTTACAGAACGTCTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
CAGTGGTCGTTCAAGGAGTTCATCAACATGATCCAACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCAAACCGGCCACCGGACGACC
GGTTTAGCCGGTAATCACCAGCCAGACAGCCTCCAGCGGGAGTGGCGACGCTGTCGCGTCGGCGGCAGCCGCCGCCGACAGCGACAGCTCTCGGTCGGTT
CGTCGAAGATTCTCTCGTTGAGACCGTCAGTGCAACCGCTCCGCCACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGATGTACTG
CTTTCTCGTCAACCGCCTTGACGAGGAAGTTTCGCTCTCGTTAGCCAATAACGCTGAAATCACTGCTGAAGACATCTATGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCTGTCTCTACGCTCTGTGCGTCGAGCCAGAACTCACCCGCTGGGAACACGGTCCTCTACCATCTTCGGACGAAGTTCGAGCCGGAAC
GGCTCGAACGAGTCGCTAACACGCTCCTGCGAAAGGATCTCGATGAATTGCTCCCCGAACAGGTGGAGGTCGTTTCAGACCTCCACCTGCGGCCCTACTA
TGGAGACGAAGACGACACCGACGGTCTCTATCACTCCCAAGCGAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACACTACACGCTGGCGGTGCGCCGTCTGACCGACGGCGACACCGCCAGCAGTGTCCTCGCCGAGTTTCTTGGTCTCCTTGACGGCCTTGACCTCGACG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCATAACCACGCCTACGTCATGCCGGTCGTCCGCTGGGG
AAAGACGATCAAGCAAGAACTCTCGGAAGGCTGGAGTCGCGTGATTCAGCACGACATGACGGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCT
GTCTACATCGACTGTACCTACCAGAATGGGCGGTACGACGACCATGGTGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGAG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCGAGCTACCGACTTTCCGAGCAAAGTATTGCGACGACCTCGACACAGAATCCGGTCGTCCG
GTTGCTGTACGTTGTGGTAAGCCTGCTGTTACAGAACGTCTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
CAGTGGTCGTTCAAGGAGTTCATCAACATGATCCAACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCAAACCGGCCACCGGACGACC
GGTTTAGCCGGTAATCACCAGCCAGACAGCCTCCAGCGGGAGTGGCGACGCTGTCGCGTCGGCGGCAGCCGCCGCCGACAGCGACAGCTCTCGGTCGGTT
CGTCGAAGATTCTCTCGTTGAGACCGTCAGTGCAACCGCTCCGCCACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGATGTACTG
Protein section
ORF number : 0
Comments
ISHla5 is 95% aa similar to ISHla1 and ISH3B.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.