ISHvo2
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013966 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV4 |
DNA section
IS Length : 1523 bp
Ends
IR Length : 15
IRL : GGCTCTGTTGAAATCCTCAGAGAGTTACAGGTTCGACCAGTAGTGTGACC
IRR : GGCTCTGTTGAAATCTACTTTGCCTACATTAGTTGTTGGATCCATCTCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGACAACAA | GCCGAAGC | GACTTGCGCA | 8 |
DNA sequence
GGCTCTGTTGAAATCCTCAGAGAGTTACAGGTTCGACCAGTAGTGTGACCGAATGCAGGCCCTCCCAAAGTCGCGGTTGCTCCGATTTGTTGAGCAGGCA
TTTCACTTGGCTCGTCGTACGGTTGCTCGCTACTCCTCGAAATTCTCGAAACAACGGTACACACTTCACCAGCACATTGTCCTCCTCTGTCTCAAGGTGC
GGAAGAACACGACGTACCGGACGCTTCTTGACGAACTTATCGAGATGCCTCGGATTCGGAGCGCCATCGACCTTGAGGAACTCCCAACACCTTCGACATT
GTGTAAAGCGTTCAATCGCCTTGACATGGCTGTTTGGCGGGTTCTTCTCAATCTCTCAGTCACGCTTCTCCCAACCAACGGTGTCGTCGGCATCGACGCA
TCCGGATTTGACCGGAGCCACGCCTCAAAACACTATACGAAGCGAACAAAGCTAACGATTCAGCAGTTGAAAGTTACACTTCTCGTTGATACGAGGGCGA
ATGCTATCATCGATTTACACGTGACAACGACACGAAAACACGACTCACAGATCGCGCCGTCGCTCATCAAGCGAAATACCGGTGAAGTGGCGATTCTCCT
CGGTGACAAGGGATACGATGACCAGAAGATTCGCGCGTTGGCTCGTGACGAGGGCGTTCGTCCGCTTATCAAACACCGAAAGTTCTCATCACTTCACAAA
GCGTGGAACGCTCGCTTGGATGCTGATATCTACGGACAACGGAGCCAGAGTGAGACAGTAAACTCTAATCTAAAGCGTAAATACGGCAACTTTGTTCGTT
CACGATATTGGTGGAAACAATTCCGCGAGATAACCATGAAGTGTCTCGTTCACAATCTTGATTCGGCTCTCTGAACGGGGAGGTGACTCACTCCGTGTGA
GAACCTCCTCCCGAAGAGCGAAGTAAAGCCGCAACTGAATGATAGAGTTCAATCTCAAAGACATATGCCAAGAGATAGGCGAAGACAACTCCACCAAGAT
AACCAATAATAGCTGTAACTGACATAGCACGCGTGATGTAGTAATCTGGGAGTGGGTACAGACCAATAGCTGACAGTACGATCGGTGCAAAGAGTGTGAG
AGACAGACCCCACACGACTAAGGCAAAAATAAACTCGACTCTCTTTTTATGATCTTGCCGTTCCTGTTGCTTAGACGATGTCTGTGTTGAAACCCAGAGA
AATCCACCAATAAGTCCAATAACGGGTGTCCCAACCCAAAGAATCCGAAGGATCGACGCAACACCACTTTGCGAGAGGGGTTGGTAGCTGGTGAGGGTGC
CAAATATTACATTAGCAAAAATCTCACCGAGAATTCCCCATTGGAGGGCACCAGTCAATCTTGCAGTGATTGATGTCCGGTAATTGTTGGGGGCCATATA
ATGATGGATGAATGTACATACATATCATGACTTCGGAATGCCGAGAGTTACTTTTCCGTGACTAGCTGAAATCTGGAGATGGATCCAACAACTAATGTAG
GCAAAGTAGATTTCAACAGAGCC
TTTCACTTGGCTCGTCGTACGGTTGCTCGCTACTCCTCGAAATTCTCGAAACAACGGTACACACTTCACCAGCACATTGTCCTCCTCTGTCTCAAGGTGC
GGAAGAACACGACGTACCGGACGCTTCTTGACGAACTTATCGAGATGCCTCGGATTCGGAGCGCCATCGACCTTGAGGAACTCCCAACACCTTCGACATT
GTGTAAAGCGTTCAATCGCCTTGACATGGCTGTTTGGCGGGTTCTTCTCAATCTCTCAGTCACGCTTCTCCCAACCAACGGTGTCGTCGGCATCGACGCA
TCCGGATTTGACCGGAGCCACGCCTCAAAACACTATACGAAGCGAACAAAGCTAACGATTCAGCAGTTGAAAGTTACACTTCTCGTTGATACGAGGGCGA
ATGCTATCATCGATTTACACGTGACAACGACACGAAAACACGACTCACAGATCGCGCCGTCGCTCATCAAGCGAAATACCGGTGAAGTGGCGATTCTCCT
CGGTGACAAGGGATACGATGACCAGAAGATTCGCGCGTTGGCTCGTGACGAGGGCGTTCGTCCGCTTATCAAACACCGAAAGTTCTCATCACTTCACAAA
GCGTGGAACGCTCGCTTGGATGCTGATATCTACGGACAACGGAGCCAGAGTGAGACAGTAAACTCTAATCTAAAGCGTAAATACGGCAACTTTGTTCGTT
CACGATATTGGTGGAAACAATTCCGCGAGATAACCATGAAGTGTCTCGTTCACAATCTTGATTCGGCTCTCTGAACGGGGAGGTGACTCACTCCGTGTGA
GAACCTCCTCCCGAAGAGCGAAGTAAAGCCGCAACTGAATGATAGAGTTCAATCTCAAAGACATATGCCAAGAGATAGGCGAAGACAACTCCACCAAGAT
AACCAATAATAGCTGTAACTGACATAGCACGCGTGATGTAGTAATCTGGGAGTGGGTACAGACCAATAGCTGACAGTACGATCGGTGCAAAGAGTGTGAG
AGACAGACCCCACACGACTAAGGCAAAAATAAACTCGACTCTCTTTTTATGATCTTGCCGTTCCTGTTGCTTAGACGATGTCTGTGTTGAAACCCAGAGA
AATCCACCAATAAGTCCAATAACGGGTGTCCCAACCCAAAGAATCCGAAGGATCGACGCAACACCACTTTGCGAGAGGGGTTGGTAGCTGGTGAGGGTGC
CAAATATTACATTAGCAAAAATCTCACCGAGAATTCCCCATTGGAGGGCACCAGTCAATCTTGCAGTGATTGATGTCCGGTAATTGTTGGGGGCCATATA
ATGATGGATGAATGTACATACATATCATGACTTCGGAATGCCGAGAGTTACTTTTCCGTGACTAGCTGAAATCTGGAGATGGATCCAACAACTAATGTAG
GCAAAGTAGATTTCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 53 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MQALPKSRLLRFVEQAFHLARRTVARYSSKFSKQRYTLHQHIVLLCLKVRKNTTYRTLLDELIEMPRIRSAIDLEELPTPSTLCKAFNRLDMAVWRVLLN
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRANAIIDLHVTTTRKHDSQIAPSLIKRNTGEVAILLGDKGYDDQKIRALARDE
GVRPLIKHRKFSSLHKAWNARLDADIYGQRSQSETVNSNLKRKYGNFVRSRYWWKQFREITMKCLVHNLDSAL
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRANAIIDLHVTTTRKHDSQIAPSLIKRNTGEVAILLGDKGYDDQKIRALARDE
GVRPLIKHRKFSSLHKAWNARLDADIYGQRSQSETVNSNLKRKYGNFVRSRYWWKQFREITMKCLVHNLDSAL
Blast result :
Comments
ISHvo2 is 90% aa similar to ISHla2.
References
1] ISfinder annotation (2010).
2] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605
3] Madupu,R.M., Hartman,A.L., Norais,C., Badger,J.A., Delma,S., Haldenby,S., Khouri,H., Ren,Q., Lowe,T., Robinson,J., Furlow,J.M., Pohlschroder,M., Pfeiffer,T., Allers,T., Daniels,C. and Eisen,J.A. (2010) Direct submission GenBank.
2] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605
3] Madupu,R.M., Hartman,A.L., Norais,C., Badger,J.A., Delma,S., Haldenby,S., Khouri,H., Ren,Q., Lowe,T., Robinson,J., Furlow,J.M., Pohlschroder,M., Pfeiffer,T., Allers,T., Daniels,C. and Eisen,J.A. (2010) Direct submission GenBank.