ISH20A
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM774417 | ND | Halobacterium salinarum | Halobacterium salinarum R1 pHS2 |
DNA section
IS Length : 1375 bp
Ends
IR Length : 15
IRL : CAGTCGATCACATCGGGTTAGAGGAAGTGTCTGCTTTGGGAGGATATGCA
IRR : CAGTCGATCACATCGACAGCCGCGTAATCTCGTCTGATGTCGATAAATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAACCAACA | AAACT | ATGGATTCGT | 5 |
DNA sequence
CAGTCGATCACATCGGGTTAGAGGAAGTGTCTGCTTTGGGAGGATATGCAACAACCCGAAGCAGACAGCAAGATAGAGGAAGAGCACCTGCTTAATTTTG
TCGTCAACAGCCTTGACGAGGAACTTGCGATAGATCTTGGTGAGAACGTCGAAGTCACCACGGAGAAACTGTACGAGGTCCTCGCCGGCGCCAGCGCCGG
CGGGACCTCGATCAACCACGTCTGCGAAACAACCGAGGACTCACCGCACGCCAATACCGTCCGTGGACATCTCACCGATCAGTTTGATCTTGACTCGGTT
GAGGCGGTTGGAGACACGCTGCTTCAACGAGATGCGCTTGAGACACTTCCGGATCGACCGGTGGAGGTCTGCGCAGACCTCCACCTCGATCCCTACTACG
GTGACGAAGATGAAACCGAGGCCCTGTACTTCTCACAGGCCAAGCGTGGAACAACGACGTTTCACGCGTATGCGACGCTCTACGCGCGAGTGCCTAACAA
GCGGTACACGCTGGCGGTTCGCCAGCTTGTCGCTGGCGACACCACCAGCGATGTCCTCACTGAGTTCCTTGAACTCCTCAACGGCCTTGACCTCGGCGTC
AAGGCCGTCTACCTTGATCGTGGATTCTACAACAGCACCTGTCTCGGACTGCTGTACGCGCACAACTACGCCTACGTGATGCCGATCGTCAAGTGGGGCG
AGACGATCCAAGACGAACTCAGCAGAGGCTGGAGCCGCGAGATCGAACACGATCTCGCCGGCGAGGTGGCCTTCCCCGTGTTCATTGACTGCGTCTACCA
GCAGGGACGATACGATGAGCACGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGACACGCCACGGGATGCCCGAGAGCACTACAGCAAG
CGCTTCGGCATCGAGTCGAGCTACCGATTAGCCAAGCAGAGCCTCGCGTTCACCAGTTCTCAGGACGCTGGCTTGCGGCTGGTGATGTTTGTCGTGAGTC
TGCTGCTCCAGAACAGCTGGCGGTATCTCCATTGGAAGTACGTGGCGGCGCCCCGCCGCGGGGGACGCCGCCTCTGGAACTGGTCGTTCACGGAGTTCTG
TGAGATGGTGCTGCGGGCGGCCTGGACAGCGCTCGGTGTGCGCAGGGCTGTTCCAGCGAACCAGTCACTCGACGACCGGTTCTTCCGGTAGCTGTCCACC
GGTCCGGACAGCGGTTGTGAGTGGCGACACTGTCGCGTCGGCGGCAGTCCGCCGCCGACAGCGACGGTCTATCCCGAAGATCACGCTCACCAGCGCTTCG
AAGACGCTCCACGACCAGTTCGATCTGATTTATCGACATCAGACGAGATTACGCGGCTGTCGATGTGATCGACTG
TCGTCAACAGCCTTGACGAGGAACTTGCGATAGATCTTGGTGAGAACGTCGAAGTCACCACGGAGAAACTGTACGAGGTCCTCGCCGGCGCCAGCGCCGG
CGGGACCTCGATCAACCACGTCTGCGAAACAACCGAGGACTCACCGCACGCCAATACCGTCCGTGGACATCTCACCGATCAGTTTGATCTTGACTCGGTT
GAGGCGGTTGGAGACACGCTGCTTCAACGAGATGCGCTTGAGACACTTCCGGATCGACCGGTGGAGGTCTGCGCAGACCTCCACCTCGATCCCTACTACG
GTGACGAAGATGAAACCGAGGCCCTGTACTTCTCACAGGCCAAGCGTGGAACAACGACGTTTCACGCGTATGCGACGCTCTACGCGCGAGTGCCTAACAA
GCGGTACACGCTGGCGGTTCGCCAGCTTGTCGCTGGCGACACCACCAGCGATGTCCTCACTGAGTTCCTTGAACTCCTCAACGGCCTTGACCTCGGCGTC
AAGGCCGTCTACCTTGATCGTGGATTCTACAACAGCACCTGTCTCGGACTGCTGTACGCGCACAACTACGCCTACGTGATGCCGATCGTCAAGTGGGGCG
AGACGATCCAAGACGAACTCAGCAGAGGCTGGAGCCGCGAGATCGAACACGATCTCGCCGGCGAGGTGGCCTTCCCCGTGTTCATTGACTGCGTCTACCA
GCAGGGACGATACGATGAGCACGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGACACGCCACGGGATGCCCGAGAGCACTACAGCAAG
CGCTTCGGCATCGAGTCGAGCTACCGATTAGCCAAGCAGAGCCTCGCGTTCACCAGTTCTCAGGACGCTGGCTTGCGGCTGGTGATGTTTGTCGTGAGTC
TGCTGCTCCAGAACAGCTGGCGGTATCTCCATTGGAAGTACGTGGCGGCGCCCCGCCGCGGGGGACGCCGCCTCTGGAACTGGTCGTTCACGGAGTTCTG
TGAGATGGTGCTGCGGGCGGCCTGGACAGCGCTCGGTGTGCGCAGGGCTGTTCCAGCGAACCAGTCACTCGACGACCGGTTCTTCCGGTAGCTGTCCACC
GGTCCGGACAGCGGTTGTGAGTGGCGACACTGTCGCGTCGGCGGCAGTCCGCCGCCGACAGCGACGGTCTATCCCGAAGATCACGCTCACCAGCGCTTCG
AAGACGCTCCACGACCAGTTCGATCTGATTTATCGACATCAGACGAGATTACGCGGCTGTCGATGTGATCGACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1146 bp | 381 aa | 46 | 1191 | + | No |
Chemistry : DDE
ORF sequence :
MQQPEADSKIEEEHLLNFVVNSLDEELAIDLGENVEVTTEKLYEVLAGASAGGTSINHVCETTEDSPHANTVRGHLTDQFDLDSVEAVGDTLLQRDALET
LPDRPVEVCADLHLDPYYGDEDETEALYFSQAKRGTTTFHAYATLYARVPNKRYTLAVRQLVAGDTTSDVLTEFLELLNGLDLGVKAVYLDRGFYNSTCL
GLLYAHNYAYVMPIVKWGETIQDELSRGWSREIEHDLAGEVAFPVFIDCVYQQGRYDEHGVARHGYAADAPFIDTPRDAREHYSKRFGIESSYRLAKQSL
AFTSSQDAGLRLVMFVVSLLLQNSWRYLHWKYVAAPRRGGRRLWNWSFTEFCEMVLRAAWTALGVRRAVPANQSLDDRFFR
LPDRPVEVCADLHLDPYYGDEDETEALYFSQAKRGTTTFHAYATLYARVPNKRYTLAVRQLVAGDTTSDVLTEFLELLNGLDLGVKAVYLDRGFYNSTCL
GLLYAHNYAYVMPIVKWGETIQDELSRGWSREIEHDLAGEVAFPVFIDCVYQQGRYDEHGVARHGYAADAPFIDTPRDAREHYSKRFGIESSYRLAKQSL
AFTSSQDAGLRLVMFVVSLLLQNSWRYLHWKYVAAPRRGGRRLWNWSFTEFCEMVLRAAWTALGVRRAVPANQSLDDRFFR
Blast result :
Comments
In the Halobacterium salinarum strain R1 genome, this ISH element is interrupted between pos 372 and 373 by a 108 bp element.
ISH20A is 80% aa similar to ISH3C.
ISH20A and ISH20 have same extremities.
ISH20 is the historical copie of ISH20A, but this is a pseudogene.
ISH20A is 80% aa similar to ISH3C.
ISH20A and ISH20 have same extremities.
ISH20 is the historical copie of ISH20A, but this is a pseudogene.
References
1] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91, 335-346