ISNph20
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1624 bp
Ends
Left end : CTGAATGCAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGTTAACGAGACGCTCCGCGTCTCGTTCGCACATCAGAGCG II struct. : No
Right end : TCCCTACGGACACCCATTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAGCGAGCGCGTCAGCGCGAGCAGGGTGGGGTAGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCTGTCCGT | TTAG | TCGTCGACGA |
DNA sequence
CTGAATGCAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGTTAACGAGACGCTCCGCGTCTCGTTCGCACATCAGAGCG
CTTCGCGTTCTGAGGACGCAGTAGGAAGGGGATACACCGCCGTCATCGTTTTTCATACACTGTGATTGTTGCAGGCCCACAGGCCCACGTAACCCAAGCA
TATATTAATCACTAAACGTATAGTATGCATACGGTGAAACGGAAGACAATCACCATCCGAGAAGACCAAGAAGAATGGATTCAGGAGAACCATTTGAATC
TCTCCTCGTTCGTCCAAGAACAACTGGATGAACTTATCGAACAACGCGACTCATAACCTATGAACTACAACTACAGGTATCGTCTCAAGCCGACAGAAAG
TCAGTGTGAGACGCTGGACTACCACCGCGATACCTGTAGGCAACTCTACAACCACGCACTGTACCGCTTCAGCCAGATTCCTGAATCCGAAGGCACCGTC
AAACAGCGTGTCCGCACGATTCGTGACGAGCTTCCCGACCTCAAAGACTGGTGGGACGCACTCACCGACATTTACTCAAAAGTGCTTCAGCCTACCGTCA
TGCGGATTGCCAAGAATATCAAAGCACTCGGACAACTCAAAGAGCAGGGCTACAAGGTTGGAGAGCTTCGATGGAAGTCCCCACGCGAGTTTCGCAGTTT
CACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTGTCGCTGTCGAAACTCGCAGATATCCCCATCGAACTTCACCGACCA
CTGCCTGACGACGCCACTGTCAAGCAAGTCACGCTCAAAAAAGAGAAGGCTGGCGAGTGGTTCGCCATTTTCGGCATGGAGATGGACGCAGAACCGCCAG
CCAAGCCGCCGCTAGAGGATATTAACATTGATGAGATGGTCGGGATTGACGTGGGCATTCTGAAGTATGCTCACGATACAGACGGCACAGCGGTCGAATC
ACTCGACCTCTCGGAAGAACGCGACAGGCTTGAACGAGAGCAGCGGAAGCTCTCGCGTAAAGAGCATGGGTCGAACAACTGGGAGAACCAGCGACGGAGA
GTGGCTGAGTGTCACCTGCAAATCAAGCGCAAGCAGCGTGATTTCCTGCACAAACTCTCGAACTACTACGCTCGGGAGTATGAACTGGTGGCCGTCGAAG
ACCTCGACGTGAAAGACATGCTGGAGTCGCCGCGTAACAGCCGTAACACGGCGTCGGCAGCGTGGAACACCTTCACCGATATGCTTGAAGCGAAGTGTGA
GCGCGAAGGCACGCACTTCGTGGAAGTTGAACCCGAAGGAACCACCAAAGAGTGTGCTCAGTGTGGCGTCGAAACCGAGAAACCGCTGTGGGTCCGTGAA
CACTCTTGTCCTGCCTGTGGCTTCGAGGCGGACAGAGACGCAAACGCAGCGTGGAACATTCTTTTTCGCGGCCTCACCGATCTAGGAGTGGGTCACTCCG
AAGGCACGCCTGTGGAGACTGCGCTCCCTACGGACACCCATTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAGCGAGCGCGTCAG
CGCGAGCAGGGTGGGGTAGTTCAC
CTTCGCGTTCTGAGGACGCAGTAGGAAGGGGATACACCGCCGTCATCGTTTTTCATACACTGTGATTGTTGCAGGCCCACAGGCCCACGTAACCCAAGCA
TATATTAATCACTAAACGTATAGTATGCATACGGTGAAACGGAAGACAATCACCATCCGAGAAGACCAAGAAGAATGGATTCAGGAGAACCATTTGAATC
TCTCCTCGTTCGTCCAAGAACAACTGGATGAACTTATCGAACAACGCGACTCATAACCTATGAACTACAACTACAGGTATCGTCTCAAGCCGACAGAAAG
TCAGTGTGAGACGCTGGACTACCACCGCGATACCTGTAGGCAACTCTACAACCACGCACTGTACCGCTTCAGCCAGATTCCTGAATCCGAAGGCACCGTC
AAACAGCGTGTCCGCACGATTCGTGACGAGCTTCCCGACCTCAAAGACTGGTGGGACGCACTCACCGACATTTACTCAAAAGTGCTTCAGCCTACCGTCA
TGCGGATTGCCAAGAATATCAAAGCACTCGGACAACTCAAAGAGCAGGGCTACAAGGTTGGAGAGCTTCGATGGAAGTCCCCACGCGAGTTTCGCAGTTT
CACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTGTCGCTGTCGAAACTCGCAGATATCCCCATCGAACTTCACCGACCA
CTGCCTGACGACGCCACTGTCAAGCAAGTCACGCTCAAAAAAGAGAAGGCTGGCGAGTGGTTCGCCATTTTCGGCATGGAGATGGACGCAGAACCGCCAG
CCAAGCCGCCGCTAGAGGATATTAACATTGATGAGATGGTCGGGATTGACGTGGGCATTCTGAAGTATGCTCACGATACAGACGGCACAGCGGTCGAATC
ACTCGACCTCTCGGAAGAACGCGACAGGCTTGAACGAGAGCAGCGGAAGCTCTCGCGTAAAGAGCATGGGTCGAACAACTGGGAGAACCAGCGACGGAGA
GTGGCTGAGTGTCACCTGCAAATCAAGCGCAAGCAGCGTGATTTCCTGCACAAACTCTCGAACTACTACGCTCGGGAGTATGAACTGGTGGCCGTCGAAG
ACCTCGACGTGAAAGACATGCTGGAGTCGCCGCGTAACAGCCGTAACACGGCGTCGGCAGCGTGGAACACCTTCACCGATATGCTTGAAGCGAAGTGTGA
GCGCGAAGGCACGCACTTCGTGGAAGTTGAACCCGAAGGAACCACCAAAGAGTGTGCTCAGTGTGGCGTCGAAACCGAGAAACCGCTGTGGGTCCGTGAA
CACTCTTGTCCTGCCTGTGGCTTCGAGGCGGACAGAGACGCAAACGCAGCGTGGAACATTCTTTTTCGCGGCCTCACCGATCTAGGAGTGGGTCACTCCG
AAGGCACGCCTGTGGAGACTGCGCTCCCTACGGACACCCATTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAGCGAGCGCGTCAG
CGCGAGCAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 360 | 1619 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLKPTESQCETLDYHRDTCRQLYNHALYRFSQIPESEGTVKQRVRTIRDELPDLKDWWDALTDIYSKVLQPTVMRIAKNIKALGQLKEQGYKV
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIELHRPLPDDATVKQVTLKKEKAGEWFAIFGMEMDAEPPAKPPLEDINIDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEREQRKLSRKEHGSNNWENQRRRVAECHLQIKRKQRDFLHKLSNYYAREYELVAVEDLDVKDMLESPRNSRNTASA
AWNTFTDMLEAKCEREGTHFVEVEPEGTTKECAQCGVETEKPLWVREHSCPACGFEADRDANAAWNILFRGLTDLGVGHSEGTPVETALPTDTHSVSAKR
VVEAGSPTLSERVSASRVG
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIELHRPLPDDATVKQVTLKKEKAGEWFAIFGMEMDAEPPAKPPLEDINIDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEREQRKLSRKEHGSNNWENQRRRVAECHLQIKRKQRDFLHKLSNYYAREYELVAVEDLDVKDMLESPRNSRNTASA
AWNTFTDMLEAKCEREGTHFVEVEPEGTTKECAQCGVETEKPLWVREHSCPACGFEADRDANAAWNILFRGLTDLGVGHSEGTPVETALPTDTHSVSAKR
VVEAGSPTLSERVSASRVG
Blast result :
Comments
ISNph20 is 81% (ORFB) aa similar to ISHma12.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343