ISNph20

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1624 bp

Ends


Left end : CTGAATGCAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGTTAACGAGACGCTCCGCGTCTCGTTCGCACATCAGAGCG II struct. : No
Right end : TCCCTACGGACACCCATTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAGCGAGCGCGTCAGCGCGAGCAGGGTGGGGTAGTTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCTGTCCGTTTAGTCGTCGACGA

DNA sequence

CTGAATGCAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGAAGGCCGAGTAGCGTTAACGAGACGCTCCGCGTCTCGTTCGCACATCAGAGCG
CTTCGCGTTCTGAGGACGCAGTAGGAAGGGGATACACCGCCGTCATCGTTTTTCATACACTGTGATTGTTGCAGGCCCACAGGCCCACGTAACCCAAGCA
TATATTAATCACTAAACGTATAGTATGCATACGGTGAAACGGAAGACAATCACCATCCGAGAAGACCAAGAAGAATGGATTCAGGAGAACCATTTGAATC
TCTCCTCGTTCGTCCAAGAACAACTGGATGAACTTATCGAACAACGCGACTCATAACCTATGAACTACAACTACAGGTATCGTCTCAAGCCGACAGAAAG
TCAGTGTGAGACGCTGGACTACCACCGCGATACCTGTAGGCAACTCTACAACCACGCACTGTACCGCTTCAGCCAGATTCCTGAATCCGAAGGCACCGTC
AAACAGCGTGTCCGCACGATTCGTGACGAGCTTCCCGACCTCAAAGACTGGTGGGACGCACTCACCGACATTTACTCAAAAGTGCTTCAGCCTACCGTCA
TGCGGATTGCCAAGAATATCAAAGCACTCGGACAACTCAAAGAGCAGGGCTACAAGGTTGGAGAGCTTCGATGGAAGTCCCCACGCGAGTTTCGCAGTTT
CACCTACAACCAGTCTGGCTTCGAACTCGACAAGAAGGGTGGTCAGACCGTGTTGTCGCTGTCGAAACTCGCAGATATCCCCATCGAACTTCACCGACCA
CTGCCTGACGACGCCACTGTCAAGCAAGTCACGCTCAAAAAAGAGAAGGCTGGCGAGTGGTTCGCCATTTTCGGCATGGAGATGGACGCAGAACCGCCAG
CCAAGCCGCCGCTAGAGGATATTAACATTGATGAGATGGTCGGGATTGACGTGGGCATTCTGAAGTATGCTCACGATACAGACGGCACAGCGGTCGAATC
ACTCGACCTCTCGGAAGAACGCGACAGGCTTGAACGAGAGCAGCGGAAGCTCTCGCGTAAAGAGCATGGGTCGAACAACTGGGAGAACCAGCGACGGAGA
GTGGCTGAGTGTCACCTGCAAATCAAGCGCAAGCAGCGTGATTTCCTGCACAAACTCTCGAACTACTACGCTCGGGAGTATGAACTGGTGGCCGTCGAAG
ACCTCGACGTGAAAGACATGCTGGAGTCGCCGCGTAACAGCCGTAACACGGCGTCGGCAGCGTGGAACACCTTCACCGATATGCTTGAAGCGAAGTGTGA
GCGCGAAGGCACGCACTTCGTGGAAGTTGAACCCGAAGGAACCACCAAAGAGTGTGCTCAGTGTGGCGTCGAAACCGAGAAACCGCTGTGGGTCCGTGAA
CACTCTTGTCCTGCCTGTGGCTTCGAGGCGGACAGAGACGCAAACGCAGCGTGGAACATTCTTTTTCGCGGCCTCACCGATCTAGGAGTGGGTCACTCCG
AAGGCACGCCTGTGGAGACTGCGCTCCCTACGGACACCCATTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCACCCTCAGCGAGCGCGTCAG
CGCGAGCAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1260 bp419 aa3601619+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYNYRYRLKPTESQCETLDYHRDTCRQLYNHALYRFSQIPESEGTVKQRVRTIRDELPDLKDWWDALTDIYSKVLQPTVMRIAKNIKALGQLKEQGYKV
GELRWKSPREFRSFTYNQSGFELDKKGGQTVLSLSKLADIPIELHRPLPDDATVKQVTLKKEKAGEWFAIFGMEMDAEPPAKPPLEDINIDEMVGIDVGI
LKYAHDTDGTAVESLDLSEERDRLEREQRKLSRKEHGSNNWENQRRRVAECHLQIKRKQRDFLHKLSNYYAREYELVAVEDLDVKDMLESPRNSRNTASA
AWNTFTDMLEAKCEREGTHFVEVEPEGTTKECAQCGVETEKPLWVREHSCPACGFEADRDANAAWNILFRGLTDLGVGHSEGTPVETALPTDTHSVSAKR
VVEAGSPTLSERVSASRVG

 

Blast result :
Comments
ISNph20 is 81% (ORFB) aa similar to ISHma12.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343