ISBspe1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013791 | ND | Bacillus pseudofirmus | Bacillus pseudofirmus OF4 |
DNA section
IS Length : 1560 bp
Ends
IR Length : 13/15
IRL : CAGGCTGTTGAGAAAGTCTTCTCAACAGCCTATTTTTATACTTTAAACCA
IRR : CAGATTGTTGAGAAACCCCCCTTATTTAGAAGGCGGGTTTCTCATTTATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCAAAGAGA | AGCAGCTGAATTATTCAGCTGCT | ATTTTTAATT | 23 |
DNA sequence
CAGGCTGTTGAGAAAGTCTTCTCAACAGCCTATTTTTATACTTTAAACCAATTATTCAGATAGATATAATATATATAGAAAAAATGTGCTGAGGTGATGA
CATTGTTACGTCCGATTCGTGAAAAACAAATTGAATTAGAGATGGTATCTATTGATCAACTGGTTCCTGAAGATCATCTTTTACGGAAAATTGATGCGAC
GATTGATTTTAATTTCATCTATGACCGTGTGAAGTCTTTTTATTCCGAAGATAATGGGCGTCCTCCCATTGACCCTGTCATGCTATTCAAAATGATGCTC
GTTGGATACCTTTTTGGCATCCGCTCTGAAAGACAGTTGGAGAAAGAGATTCAAACTAATGTAGCTTACCGCTGGTTCCTAGGTTTAAACTTGACGGACT
CTGTTCCTCACCATTCTACAATTAGCTTTAATCGCCATAAACGCTTTAAAGGGACGAAGATCTTTCAAGACATCTTCGATGAAGTAGTTCTTTTGGCAAT
GGAACACCGTATGGTTGGTGGTCGATTACTTTTTACAGACTCGACTCATTTAAAAGCGAATGCAAACAAGCGTAAATTTGTAAAAGAAACCGTTCAAGTT
GACACAAGAGAATACATAGAGGAGTTAAATCAAGCAATCGAAGACGATCGCAAAGCTCATGGAAAAAAGCCATTACCCAAAAAGGAGAAGGAGGTGGAGG
AAAAAGAGATTAAAGTGAGTACAACGGATAAAGATAGCGGATATATGTTTAGAGATGGAAAGCCTGAAGGGTTCTTCTATTTAGATCACCGTACGACCGA
CCACAAATACAATATTATTACAGATGTCTATGTTACTCCTGGCAATGTTCATGACTCTCGCCCTTACTTGGAACGATTAGATCGGCAATGTACTCGATTC
GATTTTAAACTAGAGGCTGTTGGACTTGATGCAGGGTATTTAACCATGCCTATTTGTCATGGACTTGACCAAAGAGGCATTATGGGTGTCATTGCTCACC
GAAGATTTTCGACCGTAAAAGGACTACTACCTAAATGGAAGTTTACGTTTGATCATGAAACAGACACTTACATTTGTCCTCAGTCACAAGTTTTAACCTA
CGCAACGACAAATCGTGAAGGATATCGGCAATACCATTCCAACCCAGAGATCTGTAAAGATTGCCCGTCGCTTTCTCAATGTACTAAATCTAAAAATCAT
AAGAAGGTTATCACCCGTCATGTATGGGAGGATAAGAAAGAGAAAGTTCGAGAGAATCGCCTCTCACCCGAAGGAAAGACCATTTACAAAATGAGAAAAG
AAACAATAGAGCGAAGCTTTGCGGATTCAAAACAACTCCACGGGCTTCGCTACTGCCGGTTACGCAGCTTAGAGGGTGCGAGCGAACAAGCGCTAATGAC
TGCGACAGCGCAGAACATAAAGAAGATCGCAAACCACCTCACTAGAGGGTGAGGTGGCTTGCGATCCTCTTTAGACTCTTGTTCCATTTGTATTTTTAGA
TGTCTAACTAAATAAATGAGAAACCCGCCTTCTAAATAAGGGGGGTTTCTCAACAATCTG
CATTGTTACGTCCGATTCGTGAAAAACAAATTGAATTAGAGATGGTATCTATTGATCAACTGGTTCCTGAAGATCATCTTTTACGGAAAATTGATGCGAC
GATTGATTTTAATTTCATCTATGACCGTGTGAAGTCTTTTTATTCCGAAGATAATGGGCGTCCTCCCATTGACCCTGTCATGCTATTCAAAATGATGCTC
GTTGGATACCTTTTTGGCATCCGCTCTGAAAGACAGTTGGAGAAAGAGATTCAAACTAATGTAGCTTACCGCTGGTTCCTAGGTTTAAACTTGACGGACT
CTGTTCCTCACCATTCTACAATTAGCTTTAATCGCCATAAACGCTTTAAAGGGACGAAGATCTTTCAAGACATCTTCGATGAAGTAGTTCTTTTGGCAAT
GGAACACCGTATGGTTGGTGGTCGATTACTTTTTACAGACTCGACTCATTTAAAAGCGAATGCAAACAAGCGTAAATTTGTAAAAGAAACCGTTCAAGTT
GACACAAGAGAATACATAGAGGAGTTAAATCAAGCAATCGAAGACGATCGCAAAGCTCATGGAAAAAAGCCATTACCCAAAAAGGAGAAGGAGGTGGAGG
AAAAAGAGATTAAAGTGAGTACAACGGATAAAGATAGCGGATATATGTTTAGAGATGGAAAGCCTGAAGGGTTCTTCTATTTAGATCACCGTACGACCGA
CCACAAATACAATATTATTACAGATGTCTATGTTACTCCTGGCAATGTTCATGACTCTCGCCCTTACTTGGAACGATTAGATCGGCAATGTACTCGATTC
GATTTTAAACTAGAGGCTGTTGGACTTGATGCAGGGTATTTAACCATGCCTATTTGTCATGGACTTGACCAAAGAGGCATTATGGGTGTCATTGCTCACC
GAAGATTTTCGACCGTAAAAGGACTACTACCTAAATGGAAGTTTACGTTTGATCATGAAACAGACACTTACATTTGTCCTCAGTCACAAGTTTTAACCTA
CGCAACGACAAATCGTGAAGGATATCGGCAATACCATTCCAACCCAGAGATCTGTAAAGATTGCCCGTCGCTTTCTCAATGTACTAAATCTAAAAATCAT
AAGAAGGTTATCACCCGTCATGTATGGGAGGATAAGAAAGAGAAAGTTCGAGAGAATCGCCTCTCACCCGAAGGAAAGACCATTTACAAAATGAGAAAAG
AAACAATAGAGCGAAGCTTTGCGGATTCAAAACAACTCCACGGGCTTCGCTACTGCCGGTTACGCAGCTTAGAGGGTGCGAGCGAACAAGCGCTAATGAC
TGCGACAGCGCAGAACATAAAGAAGATCGCAAACCACCTCACTAGAGGGTGAGGTGGCTTGCGATCCTCTTTAGACTCTTGTTCCATTTGTATTTTTAGA
TGTCTAACTAAATAAATGAGAAACCCGCCTTCTAAATAAGGGGGGTTTCTCAACAATCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 103 | 1452 | + | No |
Chemistry : DDE
ORF sequence :
MLRPIREKQIELEMVSIDQLVPEDHLLRKIDATIDFNFIYDRVKSFYSEDNGRPPIDPVMLFKMMLVGYLFGIRSERQLEKEIQTNVAYRWFLGLNLTDS
VPHHSTISFNRHKRFKGTKIFQDIFDEVVLLAMEHRMVGGRLLFTDSTHLKANANKRKFVKETVQVDTREYIEELNQAIEDDRKAHGKKPLPKKEKEVEE
KEIKVSTTDKDSGYMFRDGKPEGFFYLDHRTTDHKYNIITDVYVTPGNVHDSRPYLERLDRQCTRFDFKLEAVGLDAGYLTMPICHGLDQRGIMGVIAHR
RFSTVKGLLPKWKFTFDHETDTYICPQSQVLTYATTNREGYRQYHSNPEICKDCPSLSQCTKSKNHKKVITRHVWEDKKEKVRENRLSPEGKTIYKMRKE
TIERSFADSKQLHGLRYCRLRSLEGASEQALMTATAQNIKKIANHLTRG
VPHHSTISFNRHKRFKGTKIFQDIFDEVVLLAMEHRMVGGRLLFTDSTHLKANANKRKFVKETVQVDTREYIEELNQAIEDDRKAHGKKPLPKKEKEVEE
KEIKVSTTDKDSGYMFRDGKPEGFFYLDHRTTDHKYNIITDVYVTPGNVHDSRPYLERLDRQCTRFDFKLEAVGLDAGYLTMPICHGLDQRGIMGVIAHR
RFSTVKGLLPKWKFTFDHETDTYICPQSQVLTYATTNREGYRQYHSNPEICKDCPSLSQCTKSKNHKKVITRHVWEDKKEKVRENRLSPEGKTIYKMRKE
TIERSFADSKQLHGLRYCRLRSLEGASEQALMTATAQNIKKIANHLTRG
Blast result :
Comments
ISBspe1 is 79% aa similar to ISOih1.
References
1] ISfinder annotation (2010)
2] Hu,F.Z. (2010) Diret submission GenBank.
2] Hu,F.Z. (2010) Diret submission GenBank.