ISBspe1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013791 ND Bacillus pseudofirmus
Bacillus pseudofirmus OF4
DNA section
IS Length : 1560 bp

Ends


IR Length : 13/15

IRL : CAGGCTGTTGAGAAAGTCTTCTCAACAGCCTATTTTTATACTTTAAACCA
IRR : CAGATTGTTGAGAAACCCCCCTTATTTAGAAGGCGGGTTTCTCATTTATT

Insertion site


Left flankDirect repeatRight flankDR Length
ATCAAAGAGAAGCAGCTGAATTATTCAGCTGCTATTTTTAATT23

DNA sequence

CAGGCTGTTGAGAAAGTCTTCTCAACAGCCTATTTTTATACTTTAAACCAATTATTCAGATAGATATAATATATATAGAAAAAATGTGCTGAGGTGATGA
CATTGTTACGTCCGATTCGTGAAAAACAAATTGAATTAGAGATGGTATCTATTGATCAACTGGTTCCTGAAGATCATCTTTTACGGAAAATTGATGCGAC
GATTGATTTTAATTTCATCTATGACCGTGTGAAGTCTTTTTATTCCGAAGATAATGGGCGTCCTCCCATTGACCCTGTCATGCTATTCAAAATGATGCTC
GTTGGATACCTTTTTGGCATCCGCTCTGAAAGACAGTTGGAGAAAGAGATTCAAACTAATGTAGCTTACCGCTGGTTCCTAGGTTTAAACTTGACGGACT
CTGTTCCTCACCATTCTACAATTAGCTTTAATCGCCATAAACGCTTTAAAGGGACGAAGATCTTTCAAGACATCTTCGATGAAGTAGTTCTTTTGGCAAT
GGAACACCGTATGGTTGGTGGTCGATTACTTTTTACAGACTCGACTCATTTAAAAGCGAATGCAAACAAGCGTAAATTTGTAAAAGAAACCGTTCAAGTT
GACACAAGAGAATACATAGAGGAGTTAAATCAAGCAATCGAAGACGATCGCAAAGCTCATGGAAAAAAGCCATTACCCAAAAAGGAGAAGGAGGTGGAGG
AAAAAGAGATTAAAGTGAGTACAACGGATAAAGATAGCGGATATATGTTTAGAGATGGAAAGCCTGAAGGGTTCTTCTATTTAGATCACCGTACGACCGA
CCACAAATACAATATTATTACAGATGTCTATGTTACTCCTGGCAATGTTCATGACTCTCGCCCTTACTTGGAACGATTAGATCGGCAATGTACTCGATTC
GATTTTAAACTAGAGGCTGTTGGACTTGATGCAGGGTATTTAACCATGCCTATTTGTCATGGACTTGACCAAAGAGGCATTATGGGTGTCATTGCTCACC
GAAGATTTTCGACCGTAAAAGGACTACTACCTAAATGGAAGTTTACGTTTGATCATGAAACAGACACTTACATTTGTCCTCAGTCACAAGTTTTAACCTA
CGCAACGACAAATCGTGAAGGATATCGGCAATACCATTCCAACCCAGAGATCTGTAAAGATTGCCCGTCGCTTTCTCAATGTACTAAATCTAAAAATCAT
AAGAAGGTTATCACCCGTCATGTATGGGAGGATAAGAAAGAGAAAGTTCGAGAGAATCGCCTCTCACCCGAAGGAAAGACCATTTACAAAATGAGAAAAG
AAACAATAGAGCGAAGCTTTGCGGATTCAAAACAACTCCACGGGCTTCGCTACTGCCGGTTACGCAGCTTAGAGGGTGCGAGCGAACAAGCGCTAATGAC
TGCGACAGCGCAGAACATAAAGAAGATCGCAAACCACCTCACTAGAGGGTGAGGTGGCTTGCGATCCTCTTTAGACTCTTGTTCCATTTGTATTTTTAGA
TGTCTAACTAAATAAATGAGAAACCCGCCTTCTAAATAAGGGGGGTTTCTCAACAATCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa1031452+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLRPIREKQIELEMVSIDQLVPEDHLLRKIDATIDFNFIYDRVKSFYSEDNGRPPIDPVMLFKMMLVGYLFGIRSERQLEKEIQTNVAYRWFLGLNLTDS
VPHHSTISFNRHKRFKGTKIFQDIFDEVVLLAMEHRMVGGRLLFTDSTHLKANANKRKFVKETVQVDTREYIEELNQAIEDDRKAHGKKPLPKKEKEVEE
KEIKVSTTDKDSGYMFRDGKPEGFFYLDHRTTDHKYNIITDVYVTPGNVHDSRPYLERLDRQCTRFDFKLEAVGLDAGYLTMPICHGLDQRGIMGVIAHR
RFSTVKGLLPKWKFTFDHETDTYICPQSQVLTYATTNREGYRQYHSNPEICKDCPSLSQCTKSKNHKKVITRHVWEDKKEKVRENRLSPEGKTIYKMRKE
TIERSFADSKQLHGLRYCRLRSLEGASEQALMTATAQNIKKIANHLTRG

 

Blast result :
Comments
ISBspe1 is 79% aa similar to ISOih1.
References
1] ISfinder annotation (2010)
2] Hu,F.Z. (2010) Diret submission GenBank.