ISEfa12
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABRY01000099 | ND | Enterococcus faecium | Enterococcus faecium 1,231,408 Enterococcus faecium E1636 |
DNA section
IS Length : 1517 bp
Ends
IR Length : 15
IRL : CAGACTGTAGACAAACTCCTAAATTGGGAGTGTTGTTTGCAGTTTTTTTG
IRR : CAGACTGTAGACAAAAAGGAGTGGCTTAATTGCCAACTCCTTTTTGTTAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCTGAATAA | AAGGGAGTTAGTACTCCCTT | TTTTGATAGG | 20 |
DNA sequence
CAGACTGTAGACAAACTCCTAAATTGGGAGTGTTGTTTGCAGTTTTTTTGTTTTATACTCATTGTATAAACTATTCTGGGAGTGATTCTAATGATGAGAA
AACAATCGATTGAAGGTAGAAATCAATTTGCTATGTTAACAATTGATGATCTTGTACCTAAAGATCACTTAGTTCGAAAGATTGATGCTGCGATTCAGTT
TGATTTCATTTATCCCATTGTAGAATCTACGTATTCGACCCATGGTCGTCCCAGTATTGATCCAGTGGTCTTAATTAAATTAGTATTTATCCAATATTTA
TTTGGTATCCGTTCGATGAGACAGACTATTAAAGACGTTGAAACAAATGTTGCTTATCGTTGGTTTTTAGGTTATTCATTCGAGGATCCTATCCCGCATT
TCTCTACTTTTGGTAAAAACTATGTTCGAAGATTCAGAGAAACAACTTTATTTGAAGACATTTTCTCTCATATTCTAGAACAAGCTGTAAAAGCTGGCTT
CGTTACGGAAGACAACCTTTATATTGATTCTACTCATATTAAGGCAAATGCCAATAAACATAAGTTCACAAAAGAAATGACCTACGGTCAAGCTAAAGCT
TATCAAGATGAATTAGAAGATGAAATAAATAAAGAACGTATTGCTGTAGGAAAACGTCCTTTTACATGGGACACAGAAAGTGAGTTGAGTCTTCAAAAAA
TAAGTCATTCAGATCCAGAAAGTGGTTACTATGTTAAAGGTGAACGAGAAAAACAATTTGCTTATTCCGCGCATACTTCCTGTGAAGATAATGGTTTTAT
CTTATCTACATTAATCACACCAGGAAATGTACATGACAGCCAAGTCACAATCGATCTGGTCAAACAGTCGAAAAGAGCTTTTCCAAATATAAAGCGTGTT
GTCGCTGATGCAGGATATAAGACGCCTAAATTTGTTCATTTTCTGTCACACTTGAAACTCTACCCGATTCTTCCATATACTGTACCTCATGGAGTAAAAG
GAATGTTTCGTAAAAAAGACTTTGTTTATGATGCCTATTTTGACTGCTATTTATGTCCCAATAATCAACCGTTGTTATTTTCAACTATCACTCGTGATGG
TTATCGAACCTATAAATCAAATCCAAAATTCTGTAGGAGTTGTCCATTACTTAAAAACTGTACTTTGAGTACAAAACATCAAAAAATAGTAACTCGACAT
GTTTGGGCGGATCTTATGGATGAACTTGAACACCAACGCCATACGGCGTTGAATAGAGAAATTTATAAAAAGAGAAAACAAACCATTGAACGAATATTTG
CAGATGCAAAAGAAAAGCATGGTATGCGTTGGACGAAATATCGAGGTCTCGAAAAAGTCGCCACGCACACGATGCTTACGTTTGCTGCCATGAATTTAAA
AAAACTAGCCACATGGCTATGGAAAGCAAAAAAGCCTATGGCTTTTTATTTAAAATTTCTACAAAGACTAACAAAAAGGAGTTGGCAATTAAGCCACTCC
TTTTTGTCTACAGTCTG
AACAATCGATTGAAGGTAGAAATCAATTTGCTATGTTAACAATTGATGATCTTGTACCTAAAGATCACTTAGTTCGAAAGATTGATGCTGCGATTCAGTT
TGATTTCATTTATCCCATTGTAGAATCTACGTATTCGACCCATGGTCGTCCCAGTATTGATCCAGTGGTCTTAATTAAATTAGTATTTATCCAATATTTA
TTTGGTATCCGTTCGATGAGACAGACTATTAAAGACGTTGAAACAAATGTTGCTTATCGTTGGTTTTTAGGTTATTCATTCGAGGATCCTATCCCGCATT
TCTCTACTTTTGGTAAAAACTATGTTCGAAGATTCAGAGAAACAACTTTATTTGAAGACATTTTCTCTCATATTCTAGAACAAGCTGTAAAAGCTGGCTT
CGTTACGGAAGACAACCTTTATATTGATTCTACTCATATTAAGGCAAATGCCAATAAACATAAGTTCACAAAAGAAATGACCTACGGTCAAGCTAAAGCT
TATCAAGATGAATTAGAAGATGAAATAAATAAAGAACGTATTGCTGTAGGAAAACGTCCTTTTACATGGGACACAGAAAGTGAGTTGAGTCTTCAAAAAA
TAAGTCATTCAGATCCAGAAAGTGGTTACTATGTTAAAGGTGAACGAGAAAAACAATTTGCTTATTCCGCGCATACTTCCTGTGAAGATAATGGTTTTAT
CTTATCTACATTAATCACACCAGGAAATGTACATGACAGCCAAGTCACAATCGATCTGGTCAAACAGTCGAAAAGAGCTTTTCCAAATATAAAGCGTGTT
GTCGCTGATGCAGGATATAAGACGCCTAAATTTGTTCATTTTCTGTCACACTTGAAACTCTACCCGATTCTTCCATATACTGTACCTCATGGAGTAAAAG
GAATGTTTCGTAAAAAAGACTTTGTTTATGATGCCTATTTTGACTGCTATTTATGTCCCAATAATCAACCGTTGTTATTTTCAACTATCACTCGTGATGG
TTATCGAACCTATAAATCAAATCCAAAATTCTGTAGGAGTTGTCCATTACTTAAAAACTGTACTTTGAGTACAAAACATCAAAAAATAGTAACTCGACAT
GTTTGGGCGGATCTTATGGATGAACTTGAACACCAACGCCATACGGCGTTGAATAGAGAAATTTATAAAAAGAGAAAACAAACCATTGAACGAATATTTG
CAGATGCAAAAGAAAAGCATGGTATGCGTTGGACGAAATATCGAGGTCTCGAAAAAGTCGCCACGCACACGATGCTTACGTTTGCTGCCATGAATTTAAA
AAAACTAGCCACATGGCTATGGAAAGCAAAAAAGCCTATGGCTTTTTATTTAAAATTTCTACAAAGACTAACAAAAAGGAGTTGGCAATTAAGCCACTCC
TTTTTGTCTACAGTCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1427 bp | 475 aa | 91 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MMRKQSIEGRNQFAMLTIDDLVPKDHLVRKIDAAIQFDFIYPIVESTYSTHGRPSIDPVVLIKLVFIQYLFGIRSMRQTIKDVETNVAYRWFLGYSFEDP
IPHFSTFGKNYVRRFRETTLFEDIFSHILEQAVKAGFVTEDNLYIDSTHIKANANKHKFTKEMTYGQAKAYQDELEDEINKERIAVGKRPFTWDTESELS
LQKISHSDPESGYYVKGEREKQFAYSAHTSCEDNGFILSTLITPGNVHDSQVTIDLVKQSKRAFPNIKRVVADAGYKTPKFVHFLSHLKLYPILPYTVPH
GVKGMFRKKDFVYDAYFDCYLCPNNQPLLFSTITRDGYRTYKSNPKFCRSCPLLKNCTLSTKHQKIVTRHVWADLMDELEHQRHTALNREIYKKRKQTIE
RIFADAKEKHGMRWTKYRGLEKVATHTMLTFAAMNLKKLATWLWKAKKPMAFYLKFLQRLTKRSWQLSHSFLSTV
IPHFSTFGKNYVRRFRETTLFEDIFSHILEQAVKAGFVTEDNLYIDSTHIKANANKHKFTKEMTYGQAKAYQDELEDEINKERIAVGKRPFTWDTESELS
LQKISHSDPESGYYVKGEREKQFAYSAHTSCEDNGFILSTLITPGNVHDSQVTIDLVKQSKRAFPNIKRVVADAGYKTPKFVHFLSHLKLYPILPYTVPH
GVKGMFRKKDFVYDAYFDCYLCPNNQPLLFSTITRDGYRTYKSNPKFCRSCPLLKNCTLSTKHQKIVTRHVWADLMDELEHQRHTALNREIYKKRKQTIE
RIFADAKEKHGMRWTKYRGLEKVATHTMLTFAAMNLKKLATWLWKAKKPMAFYLKFLQRLTKRSWQLSHSFLSTV
Blast result :
Comments
ISEfa12 is 86% aa similar to ISEfa7.
References
1] Isfinder annotation (2010)
2] van Schaik,W., Top,J., Bonten,M.J.M. and Willems,R.J. (2009) Direct submission GenBank.
3] Feldgarden,M., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Gilmore,M., Manson,J., Palmer,K., Carniol,K., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.
2] van Schaik,W., Top,J., Bonten,M.J.M. and Willems,R.J. (2009) Direct submission GenBank.
3] Feldgarden,M., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Gilmore,M., Manson,J., Palmer,K., Carniol,K., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.