ISYen4

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008800 ND Yersinia enterocolitica
Yersinia enterocolitica subsp. enterocolitica 8081
DNA section
IS Length : 1597 bp

Ends


IR Length : 9

IRL : CAGACTGCTGACAAAGTCCTGGCCTCCTGGCCGGGACTTTGATCTAATAG
IRR : CAGACTGCTACTGCTGACGAACCCCACTTTTTTGTGGGGTTCTGTCTTAT

Insertion site


Left flankDirect repeatRight flankDR Length
GACGTGGTATAAAGGCCCTG0

DNA sequence

CAGACTGCTGACAAAGTCCTGGCCTCCTGGCCGGGACTTTGATCTAATAGGGACAGGCTAAAAAACGAGCTTATTCCTATGCTAAAAGAATCTGCCCCTC
AACAATATCAACTCGAAATGGTCACCCTCGAAGAGCTGGTGCCGCAACATCATTTAGTCCGCAAAGTCGATGCCGCCATCGATTTCGAGTTTATCCGCGA
CGAAGTCGCCCACCTTTATTGCCACGATAATGGCCGACCCGCCATTGACCCCGTCGTTCTGTTCAAAATGATGCTCCTCGGTTATCTGTTTGGCATCCCC
AGTGAGCGCAGGCTGGTGCAGGAAATCCAGGTCAATGTCGCCTACCGCTGGTTCCTGCGGATGGGGCTGACCGACAAGATGCCCGATGCCTCAACGCTCA
GCCAGAACCGCATTCGCCGCTTCAATGGCACCGATATTTTTCAGCGTATTTTCGACAATATCGTCGAACAGGCCATCACCAAAGGCATGGTCGGCGGGCG
GGTACTCTACACCGACAGCACGCATTTCAAGGCCAATGCCAATCCGCTCAAAGCCAAAAACCTGCCCCAACCGGTCAAAGCCAGCGCGTATATTGATGCG
CTGAATGCCGCCATTGATGAAGACCGGGCTGCCACCGGAAAAAAGCCGTTAGCGCCGTCGACGACGGTGAAAATGAAGGACACCAAAGTCAGCACCACTG
ACCCGGAAAGCGGTTTTATGCACCGGGATAACAAGCCGAAAGGCTTCTTCTGGCTTGACCACCGTACCGTGGATGGCAAACACGGAATTATCACCGACAC
CTATACCACGCCCGGCAATGTGCACGACAGCCAGCCCTATATCGCCCGGCTGGAACGGCAACTCAGCCGTTTCAAACTTAATCCCATCGCGGTAGGTCTG
GACGCCGGTTACTTCACTGCACCGGTGTGCCATCTGACGGAAAAGATTGATATCATTCCAGTTATTGGGTATCGGCGGCCCAATAAAGGCCAGAATGCCC
TGCAGAAAAAACACTTTCGCTACGATGCAAAACAGGATGTTTATCATTGCCCGGAAGGGCAGCAACTTCTCTACAAAACCACCTCGCGTGAAGGCTATCG
CCACTATCACTCGTCGCCTGAGGTCTGTGCGCAATGCCCACGCTTAAGTGACTGTACGCAAAGCAAAAACAGTCAGAAAGTGGTGACACGACATGTGTGG
GAGGGGAGTAAAGAGCGGGCGAATCAGATGCGGCTGACGGCGTGGGGCAAAAAAGTGTACGCGCGACGAAAAGAGACGGTGGAGAGAAGCTTCGCGGATG
CAAAGCAGCATCATGGCCATCGCTATGCGCGGTTCCGTGGGCTGATGAAAGTGCAAATGCAGTGCCTGCTTGCAGCGGCAGCGCAAAATATGAAGAAGAT
AGCGCTGCTGGCGCTATTTTATTGTTTATTAATGATATATCGGGTTCAAAACAGGGGTGTGGGATACGAAAAGATGTTGATGGCGTTACTGAAACATCTG
ACAGACGGGCAGGAAAAAAATATCGCGAACGCGACCTTCGGTCGCTAATAAGACAGAACCCCACAAAAAAGTGGGGTTCGTCAGCAGTAGCAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1470 bp489 aa791548+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKESAPQQYQLEMVTLEELVPQHHLVRKVDAAIDFEFIRDEVAHLYCHDNGRPAIDPVVLFKMMLLGYLFGIPSERRLVQEIQVNVAYRWFLRMGLTDK
MPDASTLSQNRIRRFNGTDIFQRIFDNIVEQAITKGMVGGRVLYTDSTHFKANANPLKAKNLPQPVKASAYIDALNAAIDEDRAATGKKPLAPSTTVKMK
DTKVSTTDPESGFMHRDNKPKGFFWLDHRTVDGKHGIITDTYTTPGNVHDSQPYIARLERQLSRFKLNPIAVGLDAGYFTAPVCHLTEKIDIIPVIGYRR
PNKGQNALQKKHFRYDAKQDVYHCPEGQQLLYKTTSREGYRHYHSSPEVCAQCPRLSDCTQSKNSQKVVTRHVWEGSKERANQMRLTAWGKKVYARRKET
VERSFADAKQHHGHRYARFRGLMKVQMQCLLAAAAQNMKKIALLALFYCLLMIYRVQNRGVGYEKMLMALLKHLTDGQEKNIANATFGR

 

Blast result :
Comments
ISYen4 is 81% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Thomson,N.R., Howard,S., Wren,B.W., Holden,M.T., Crossman,L., Challis,G.L., Churcher,C., Mungall,K., Brooks,K., Chillingworth,T., Feltwell,T., Abdellah,Z., Hauser,H., Jagels,K., Maddison,M., Moule,S., Sanders,M., Whitehead,S., Quail,M.A., Dougan,G., Parkhill,J. and Prentice,M.B. (2006) PLoS Genet. 2 (12), E206.
3] Delihas,N. (2003) BMC Microbiol. 3, 13