ISYen4
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008800 | ND | Yersinia enterocolitica | Yersinia enterocolitica subsp. enterocolitica 8081 |
DNA section
IS Length : 1597 bp
Ends
IR Length : 9
IRL : CAGACTGCTGACAAAGTCCTGGCCTCCTGGCCGGGACTTTGATCTAATAG
IRR : CAGACTGCTACTGCTGACGAACCCCACTTTTTTGTGGGGTTCTGTCTTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGTGGTAT | AAAGGCCCTG | 0 |
DNA sequence
CAGACTGCTGACAAAGTCCTGGCCTCCTGGCCGGGACTTTGATCTAATAGGGACAGGCTAAAAAACGAGCTTATTCCTATGCTAAAAGAATCTGCCCCTC
AACAATATCAACTCGAAATGGTCACCCTCGAAGAGCTGGTGCCGCAACATCATTTAGTCCGCAAAGTCGATGCCGCCATCGATTTCGAGTTTATCCGCGA
CGAAGTCGCCCACCTTTATTGCCACGATAATGGCCGACCCGCCATTGACCCCGTCGTTCTGTTCAAAATGATGCTCCTCGGTTATCTGTTTGGCATCCCC
AGTGAGCGCAGGCTGGTGCAGGAAATCCAGGTCAATGTCGCCTACCGCTGGTTCCTGCGGATGGGGCTGACCGACAAGATGCCCGATGCCTCAACGCTCA
GCCAGAACCGCATTCGCCGCTTCAATGGCACCGATATTTTTCAGCGTATTTTCGACAATATCGTCGAACAGGCCATCACCAAAGGCATGGTCGGCGGGCG
GGTACTCTACACCGACAGCACGCATTTCAAGGCCAATGCCAATCCGCTCAAAGCCAAAAACCTGCCCCAACCGGTCAAAGCCAGCGCGTATATTGATGCG
CTGAATGCCGCCATTGATGAAGACCGGGCTGCCACCGGAAAAAAGCCGTTAGCGCCGTCGACGACGGTGAAAATGAAGGACACCAAAGTCAGCACCACTG
ACCCGGAAAGCGGTTTTATGCACCGGGATAACAAGCCGAAAGGCTTCTTCTGGCTTGACCACCGTACCGTGGATGGCAAACACGGAATTATCACCGACAC
CTATACCACGCCCGGCAATGTGCACGACAGCCAGCCCTATATCGCCCGGCTGGAACGGCAACTCAGCCGTTTCAAACTTAATCCCATCGCGGTAGGTCTG
GACGCCGGTTACTTCACTGCACCGGTGTGCCATCTGACGGAAAAGATTGATATCATTCCAGTTATTGGGTATCGGCGGCCCAATAAAGGCCAGAATGCCC
TGCAGAAAAAACACTTTCGCTACGATGCAAAACAGGATGTTTATCATTGCCCGGAAGGGCAGCAACTTCTCTACAAAACCACCTCGCGTGAAGGCTATCG
CCACTATCACTCGTCGCCTGAGGTCTGTGCGCAATGCCCACGCTTAAGTGACTGTACGCAAAGCAAAAACAGTCAGAAAGTGGTGACACGACATGTGTGG
GAGGGGAGTAAAGAGCGGGCGAATCAGATGCGGCTGACGGCGTGGGGCAAAAAAGTGTACGCGCGACGAAAAGAGACGGTGGAGAGAAGCTTCGCGGATG
CAAAGCAGCATCATGGCCATCGCTATGCGCGGTTCCGTGGGCTGATGAAAGTGCAAATGCAGTGCCTGCTTGCAGCGGCAGCGCAAAATATGAAGAAGAT
AGCGCTGCTGGCGCTATTTTATTGTTTATTAATGATATATCGGGTTCAAAACAGGGGTGTGGGATACGAAAAGATGTTGATGGCGTTACTGAAACATCTG
ACAGACGGGCAGGAAAAAAATATCGCGAACGCGACCTTCGGTCGCTAATAAGACAGAACCCCACAAAAAAGTGGGGTTCGTCAGCAGTAGCAGTCTG
AACAATATCAACTCGAAATGGTCACCCTCGAAGAGCTGGTGCCGCAACATCATTTAGTCCGCAAAGTCGATGCCGCCATCGATTTCGAGTTTATCCGCGA
CGAAGTCGCCCACCTTTATTGCCACGATAATGGCCGACCCGCCATTGACCCCGTCGTTCTGTTCAAAATGATGCTCCTCGGTTATCTGTTTGGCATCCCC
AGTGAGCGCAGGCTGGTGCAGGAAATCCAGGTCAATGTCGCCTACCGCTGGTTCCTGCGGATGGGGCTGACCGACAAGATGCCCGATGCCTCAACGCTCA
GCCAGAACCGCATTCGCCGCTTCAATGGCACCGATATTTTTCAGCGTATTTTCGACAATATCGTCGAACAGGCCATCACCAAAGGCATGGTCGGCGGGCG
GGTACTCTACACCGACAGCACGCATTTCAAGGCCAATGCCAATCCGCTCAAAGCCAAAAACCTGCCCCAACCGGTCAAAGCCAGCGCGTATATTGATGCG
CTGAATGCCGCCATTGATGAAGACCGGGCTGCCACCGGAAAAAAGCCGTTAGCGCCGTCGACGACGGTGAAAATGAAGGACACCAAAGTCAGCACCACTG
ACCCGGAAAGCGGTTTTATGCACCGGGATAACAAGCCGAAAGGCTTCTTCTGGCTTGACCACCGTACCGTGGATGGCAAACACGGAATTATCACCGACAC
CTATACCACGCCCGGCAATGTGCACGACAGCCAGCCCTATATCGCCCGGCTGGAACGGCAACTCAGCCGTTTCAAACTTAATCCCATCGCGGTAGGTCTG
GACGCCGGTTACTTCACTGCACCGGTGTGCCATCTGACGGAAAAGATTGATATCATTCCAGTTATTGGGTATCGGCGGCCCAATAAAGGCCAGAATGCCC
TGCAGAAAAAACACTTTCGCTACGATGCAAAACAGGATGTTTATCATTGCCCGGAAGGGCAGCAACTTCTCTACAAAACCACCTCGCGTGAAGGCTATCG
CCACTATCACTCGTCGCCTGAGGTCTGTGCGCAATGCCCACGCTTAAGTGACTGTACGCAAAGCAAAAACAGTCAGAAAGTGGTGACACGACATGTGTGG
GAGGGGAGTAAAGAGCGGGCGAATCAGATGCGGCTGACGGCGTGGGGCAAAAAAGTGTACGCGCGACGAAAAGAGACGGTGGAGAGAAGCTTCGCGGATG
CAAAGCAGCATCATGGCCATCGCTATGCGCGGTTCCGTGGGCTGATGAAAGTGCAAATGCAGTGCCTGCTTGCAGCGGCAGCGCAAAATATGAAGAAGAT
AGCGCTGCTGGCGCTATTTTATTGTTTATTAATGATATATCGGGTTCAAAACAGGGGTGTGGGATACGAAAAGATGTTGATGGCGTTACTGAAACATCTG
ACAGACGGGCAGGAAAAAAATATCGCGAACGCGACCTTCGGTCGCTAATAAGACAGAACCCCACAAAAAAGTGGGGTTCGTCAGCAGTAGCAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1470 bp | 489 aa | 79 | 1548 | + | No |
Chemistry : DDE
ORF sequence :
MLKESAPQQYQLEMVTLEELVPQHHLVRKVDAAIDFEFIRDEVAHLYCHDNGRPAIDPVVLFKMMLLGYLFGIPSERRLVQEIQVNVAYRWFLRMGLTDK
MPDASTLSQNRIRRFNGTDIFQRIFDNIVEQAITKGMVGGRVLYTDSTHFKANANPLKAKNLPQPVKASAYIDALNAAIDEDRAATGKKPLAPSTTVKMK
DTKVSTTDPESGFMHRDNKPKGFFWLDHRTVDGKHGIITDTYTTPGNVHDSQPYIARLERQLSRFKLNPIAVGLDAGYFTAPVCHLTEKIDIIPVIGYRR
PNKGQNALQKKHFRYDAKQDVYHCPEGQQLLYKTTSREGYRHYHSSPEVCAQCPRLSDCTQSKNSQKVVTRHVWEGSKERANQMRLTAWGKKVYARRKET
VERSFADAKQHHGHRYARFRGLMKVQMQCLLAAAAQNMKKIALLALFYCLLMIYRVQNRGVGYEKMLMALLKHLTDGQEKNIANATFGR
MPDASTLSQNRIRRFNGTDIFQRIFDNIVEQAITKGMVGGRVLYTDSTHFKANANPLKAKNLPQPVKASAYIDALNAAIDEDRAATGKKPLAPSTTVKMK
DTKVSTTDPESGFMHRDNKPKGFFWLDHRTVDGKHGIITDTYTTPGNVHDSQPYIARLERQLSRFKLNPIAVGLDAGYFTAPVCHLTEKIDIIPVIGYRR
PNKGQNALQKKHFRYDAKQDVYHCPEGQQLLYKTTSREGYRHYHSSPEVCAQCPRLSDCTQSKNSQKVVTRHVWEGSKERANQMRLTAWGKKVYARRKET
VERSFADAKQHHGHRYARFRGLMKVQMQCLLAAAAQNMKKIALLALFYCLLMIYRVQNRGVGYEKMLMALLKHLTDGQEKNIANATFGR
Blast result :
Comments
ISYen4 is 81% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Thomson,N.R., Howard,S., Wren,B.W., Holden,M.T., Crossman,L., Challis,G.L., Churcher,C., Mungall,K., Brooks,K., Chillingworth,T., Feltwell,T., Abdellah,Z., Hauser,H., Jagels,K., Maddison,M., Moule,S., Sanders,M., Whitehead,S., Quail,M.A., Dougan,G., Parkhill,J. and Prentice,M.B. (2006) PLoS Genet. 2 (12), E206.
3] Delihas,N. (2003) BMC Microbiol. 3, 13
2] Thomson,N.R., Howard,S., Wren,B.W., Holden,M.T., Crossman,L., Challis,G.L., Churcher,C., Mungall,K., Brooks,K., Chillingworth,T., Feltwell,T., Abdellah,Z., Hauser,H., Jagels,K., Maddison,M., Moule,S., Sanders,M., Whitehead,S., Quail,M.A., Dougan,G., Parkhill,J. and Prentice,M.B. (2006) PLoS Genet. 2 (12), E206.
3] Delihas,N. (2003) BMC Microbiol. 3, 13