ISVha2
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Vibrio harveyi | Vibrio harveyi IDA3 |
DNA section
IS Length : 1593 bp
Ends
IR Length : 12/15
IRL : CAGACTGCTGACAAAGGTCTAGCCATCAGGCTAGACCTTTGATCTAATAG
IRR : CAGATTGATGACGAACCCCACCTTTTTAGGTGGGGTTCTTTTTTATAAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGCTATGTAA | AAGCCGATGTTAATACATCGGCTT | TTTTGATCGT | 24 |
DNA sequence
CAGACTGCTGACAAAGGTCTAGCCATCAGGCTAGACCTTTGATCTAATAGGGGTATCTAAAAGTGGATACGCCAATATGCTACAAGCCCCTTCTCCTCAA
CAATACGAATTTGAAATGGTGACGATGGAGCAGTTAGTTCCTAAAAACCATTTAGTCCGAAAAATTGATAAAGCCATAGACTTCGAATTTATCCGGGACG
AAGTGGCTCATCTCTATTGCCAAGATAATGGTCGACCTCCTGTTGACCCTGTTCGACTTTTCAAAATCATTTTTCTTGGCTACCTCTTCGGGATCAAAAG
CGAGCGACAGCTCGTTAAAGAGATTGAAGTCAATGTCGCCTATCGTTGGTTCTTGCGCATGTCGTTAACGGAGAAGGTTATCCATGCTTCAACACTGAGC
CAAAACCGTATTCGCCGCTTCAATAATACTGACGTATTTGAACGTATCTTTATCAACATCGTTGAGCAGGCCATGGCCAAAGGCCTAGTCGCTGGACAGC
AACTCTTTACCGACAGCACCCACCTCAAAGCAAACGCTAACAAAAACAAGCATACCAATGAGCTCAAAGACGCTCGAGTCAGTGCTTATCTCGACATGCT
TGATGAAGACGTTGCATTAGACCGAGAACGAGAAGGAAAGAAGCCGCTTAAGGCACGAGTATCCGAACCTAAAACAAAGAATACAAAAGTCAGTACGACA
GACCCAGAAAGTGGGTTTATGACGAGAGATAATAAACCACAAGGCTTCTTCTACCTTGACCATCGTACCGTTGATGGCCTGCATGGGATTATCGTCGATA
CTCATGCGACGGCAGGTAATATCAATGACTCTCAACCCTATATTGAACGACTGGACTACGCGCTAGAGGAGTTCAACCTGAACCCTATAGCTGTTGGTCT
CGATGCCGGCTATTTTACCGCTCCCGTAGCAGAGTCATTAGAACGCCGAAACATCTTAGGTGTGTTTGGCTATCGTAGGCCATCAAGAACAAAGAACACG
TTCAAGAAGAAGCACTTTGTCTACCACAAAGAAAGTGACAGTTATCAATGCCCGAATGGGCAAAGGCTTATCTACAAAACGACGTCAAGAGATGCTTACA
GAGAGTATCACTCAGACCCGAAGCAATGCGAGTTCTGTCCAATACGAAATGACTGTACTCAAAGTAAAAACATGAAAAAAGTCATCACCAGACACATCTA
TACAGATGCAGTGGAGAGAGCAAACGAAATGCGGCTCTCTCCCTATGGGAAGAAGACGTATAGACGAAGAAGTGAAACGGTAGAAAGAAGCTTCGCAGAT
GCTAAGCAGCATCATGGGCACCGTTATGCCCGCTTCCGCGGGCTAAGCAAAGTGCAAATGCAGTGTTGGTTAGCTGCCGCAGCTCAAAACATCAAGAAGA
TAGCTCTAGTAATGAGTTATTTACAAAAAATGGGGCTCAAGACGGCTCAAATACGACAAATATTAGCTTCTGAATACTTGTTTAAGAGTTGGAGCAGTTT
AAATCTGGTGTAGCGCAAAATATCGCGATCGCGACCTACGGTCGCTTATAAAAAAGAACCCCACCTAAAAAGGTGGGGTTCGTCATCAATCTG
CAATACGAATTTGAAATGGTGACGATGGAGCAGTTAGTTCCTAAAAACCATTTAGTCCGAAAAATTGATAAAGCCATAGACTTCGAATTTATCCGGGACG
AAGTGGCTCATCTCTATTGCCAAGATAATGGTCGACCTCCTGTTGACCCTGTTCGACTTTTCAAAATCATTTTTCTTGGCTACCTCTTCGGGATCAAAAG
CGAGCGACAGCTCGTTAAAGAGATTGAAGTCAATGTCGCCTATCGTTGGTTCTTGCGCATGTCGTTAACGGAGAAGGTTATCCATGCTTCAACACTGAGC
CAAAACCGTATTCGCCGCTTCAATAATACTGACGTATTTGAACGTATCTTTATCAACATCGTTGAGCAGGCCATGGCCAAAGGCCTAGTCGCTGGACAGC
AACTCTTTACCGACAGCACCCACCTCAAAGCAAACGCTAACAAAAACAAGCATACCAATGAGCTCAAAGACGCTCGAGTCAGTGCTTATCTCGACATGCT
TGATGAAGACGTTGCATTAGACCGAGAACGAGAAGGAAAGAAGCCGCTTAAGGCACGAGTATCCGAACCTAAAACAAAGAATACAAAAGTCAGTACGACA
GACCCAGAAAGTGGGTTTATGACGAGAGATAATAAACCACAAGGCTTCTTCTACCTTGACCATCGTACCGTTGATGGCCTGCATGGGATTATCGTCGATA
CTCATGCGACGGCAGGTAATATCAATGACTCTCAACCCTATATTGAACGACTGGACTACGCGCTAGAGGAGTTCAACCTGAACCCTATAGCTGTTGGTCT
CGATGCCGGCTATTTTACCGCTCCCGTAGCAGAGTCATTAGAACGCCGAAACATCTTAGGTGTGTTTGGCTATCGTAGGCCATCAAGAACAAAGAACACG
TTCAAGAAGAAGCACTTTGTCTACCACAAAGAAAGTGACAGTTATCAATGCCCGAATGGGCAAAGGCTTATCTACAAAACGACGTCAAGAGATGCTTACA
GAGAGTATCACTCAGACCCGAAGCAATGCGAGTTCTGTCCAATACGAAATGACTGTACTCAAAGTAAAAACATGAAAAAAGTCATCACCAGACACATCTA
TACAGATGCAGTGGAGAGAGCAAACGAAATGCGGCTCTCTCCCTATGGGAAGAAGACGTATAGACGAAGAAGTGAAACGGTAGAAAGAAGCTTCGCAGAT
GCTAAGCAGCATCATGGGCACCGTTATGCCCGCTTCCGCGGGCTAAGCAAAGTGCAAATGCAGTGTTGGTTAGCTGCCGCAGCTCAAAACATCAAGAAGA
TAGCTCTAGTAATGAGTTATTTACAAAAAATGGGGCTCAAGACGGCTCAAATACGACAAATATTAGCTTCTGAATACTTGTTTAAGAGTTGGAGCAGTTT
AAATCTGGTGTAGCGCAAAATATCGCGATCGCGACCTACGGTCGCTTATAAAAAAGAACCCCACCTAAAAAGGTGGGGTTCGTCATCAATCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1437 bp | 478 aa | 77 | 1513 | + | No |
Chemistry : DDE
ORF sequence :
MLQAPSPQQYEFEMVTMEQLVPKNHLVRKIDKAIDFEFIRDEVAHLYCQDNGRPPVDPVRLFKIIFLGYLFGIKSERQLVKEIEVNVAYRWFLRMSLTEK
VIHASTLSQNRIRRFNNTDVFERIFINIVEQAMAKGLVAGQQLFTDSTHLKANANKNKHTNELKDARVSAYLDMLDEDVALDREREGKKPLKARVSEPKT
KNTKVSTTDPESGFMTRDNKPQGFFYLDHRTVDGLHGIIVDTHATAGNINDSQPYIERLDYALEEFNLNPIAVGLDAGYFTAPVAESLERRNILGVFGYR
RPSRTKNTFKKKHFVYHKESDSYQCPNGQRLIYKTTSRDAYREYHSDPKQCEFCPIRNDCTQSKNMKKVITRHIYTDAVERANEMRLSPYGKKTYRRRSE
TVERSFADAKQHHGHRYARFRGLSKVQMQCWLAAAAQNIKKIALVMSYLQKMGLKTAQIRQILASEYLFKSWSSLNLV
VIHASTLSQNRIRRFNNTDVFERIFINIVEQAMAKGLVAGQQLFTDSTHLKANANKNKHTNELKDARVSAYLDMLDEDVALDREREGKKPLKARVSEPKT
KNTKVSTTDPESGFMTRDNKPQGFFYLDHRTVDGLHGIIVDTHATAGNINDSQPYIERLDYALEEFNLNPIAVGLDAGYFTAPVAESLERRNILGVFGYR
RPSRTKNTFKKKHFVYHKESDSYQCPNGQRLIYKTTSRDAYREYHSDPKQCEFCPIRNDCTQSKNMKKVITRHIYTDAVERANEMRLSPYGKKTYRRRSE
TVERSFADAKQHHGHRYARFRGLSKVQMQCWLAAAAQNIKKIALVMSYLQKMGLKTAQIRQILASEYLFKSWSSLNLV
Blast result :
Comments
ISVha2 is 83% aa similar to ISGho1.
Genome in progress : accession number : NZ_ACZC01000031.
Genome in progress : accession number : NZ_ACZC01000031.
References
1] ISfinder annotation (2010)
2] Thompson,C.C., Vicente,A.C., Souza,R.C., Vasconcelos,A.T., Vesth,T., Alves,N. Jr., Ussery,D.W., Iida,T. and Thompson,F.L.(2009) BMC Evol. Biol. 9, 258.
2] Thompson,C.C., Vicente,A.C., Souza,R.C., Vasconcelos,A.T., Vesth,T., Alves,N. Jr., Ussery,D.W., Iida,T. and Thompson,F.L.(2009) BMC Evol. Biol. 9, 258.