ISAco1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FP929061 ND Anaerostipes coli
Anaerostipes coli
DNA section
IS Length : 1671 bp

Ends


IR Length : 16

IRL : GGAGGGCACTGAAAAAGTAGATTATACCGTCTATATTTGGTACAATGTAT
IRR : GGAGGGCACTGAAAAACATACCATTTTTATTTTGACTTTAATAAAAAAGA

Insertion site


Left flankDirect repeatRight flankDR Length
CTCCCGCTACCTTCAGGTGGTGGGAG6

DNA sequence

GGAGGGCACTGAAAAAGTAGATTATACCGTCTATATTTGGTACAATGTATCTATCAAATATAGGCGGTGTTTTTATGATCGAACAACAGCAGAAATTGAT
GCTAAGTCCATACATGGAAATATATGAATTAGTAATCCCGAAAGATAATCTTCTCCGGCAGATAAAAGAATTGGTTGATTTTAGCTTTATTTATGATGAA
TTGCTTGCTAATTATTGTCTGGATAACGGACGAAATGCAGTTCCACCTATCCGAATGTTTAAATATCTTCTTTTAAAATCAATTTATGATTTATCAGATG
TTGATGTGGTTGAACGTTCTAAATACGATATGTCTTTTAAATATTTTTTGGACATGGCTCCAGAAGATGAAGTTATAAATCCAAGTTCATTGACAAAATT
TCGGAAGCTGCGTTTAAAGGATATGAATCTTTTGGATATGCTGATTGCCAAAACAGTTCAGTTAGCATTAGAAAAAGGAATTATTAAGTCAAAATCCATT
ATTGTGGATGCTACGCATACAAAATCAAGATACAATCAAAAGACTCCCCGTCAAGTACTCCAGGAACAATCAAAAAAACTGCGCCGTAGCATCTATGAGA
TTGATGAAACAATGAAAGAAAAATTTCCTGATAAAAACACAGAGGATTCTTTAGAAAAAGAACTAAAATACTGTAAACAGCTTATTGATGTTGTAAAAGG
AAATGAAGAAATTTGCAGTTATCCAAAAGTGCAGGAAAAATTAAATCTACTAGAAGAATCTGTCACTGATGACATGGAACATTTAGAAACTTCAAAGGAT
GAAGATGCAAAAACTGGTCATAAGACAGCCGACACTTCATTTTTTGGATATAAAACACACATAGCAATGACAGAAGAACGGATCATCACAGCTGCCACAA
TCACCAGCGGCGAAAAAACAGATGGCAAAGAACTGCCAAAACTTGTACAAAAAAGTAAAGCTGCTGGGAGACAGATTGAATCAGTCATTGGAGATATGGC
TTATTCTGAAAAGAAAAATATCGAGGCAGCAAAAGAAGGTGATTATGAACTGATAGCAAAAGTAAATCCAATTATTACACAAGGTAACCGAAGAAAGGAA
GATGAGTTTGAATTTAATAAAGATGCCGGAATGTATCAGTGTAAAGCCGGACATTTAGCCATTCATAAATATTTCGATAAAAGGAAAAAAGATAAAAAAA
ACAAAAACCCACGTATGGTCTATTTTTTCGATATTGAAAAATGTAAATGTTGTCCTTATCGTGGGGGCTGTTATAAAGAAGGAGCCAAAAAGAAAACATA
CACAGAAACAATCATTTGCGATTCCCACAGTGAACAGGTTAAATTTCAGGAAACTGAGCATTTCAAAGAAAAAATGCGGGAACGCTATAAAATAGAAGCT
AAGAACAGCGAACTAAAACATCGGCATGGTTATGACGTAGCGTCATCATCAGGTCTTATTTGTATGGAAATGTAAGGAGCAATGATGATCTTTGCAGTAA
ATCTTAAGAGAATAATTAAATTAATGAATGAAAAATAAGAACTTTGGCCGAAAAAGACAAGCAATTTATATTTTGTCTAACAGAAAATCCACCAGAATCA
TAAAAACTCTGATGGATTTTTTCTTTTTTATTAAAGTCAAAATAAAAATGGTATGTTTTTCAGTGCCCTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa751475+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIEQQQKLMLSPYMEIYELVIPKDNLLRQIKELVDFSFIYDELLANYCLDNGRNAVPPIRMFKYLLLKSIYDLSDVDVVERSKYDMSFKYFLDMAPEDEV
INPSSLTKFRKLRLKDMNLLDMLIAKTVQLALEKGIIKSKSIIVDATHTKSRYNQKTPRQVLQEQSKKLRRSIYEIDETMKEKFPDKNTEDSLEKELKYC
KQLIDVVKGNEEICSYPKVQEKLNLLEESVTDDMEHLETSKDEDAKTGHKTADTSFFGYKTHIAMTEERIITAATITSGEKTDGKELPKLVQKSKAAGRQ
IESVIGDMAYSEKKNIEAAKEGDYELIAKVNPIITQGNRRKEDEFEFNKDAGMYQCKAGHLAIHKYFDKRKKDKKNKNPRMVYFFDIEKCKCCPYRGGCY
KEGAKKKTYTETIICDSHSEQVKFQETEHFKEKMRERYKIEAKNSELKHRHGYDVASSSGLICMEM

 

Blast result :
Comments
ISAco1 is 81% aa similar to ISBcy1.
References
1] ISfinder annotation (2010)
2] Pajon,A., Turner,K., Parkhill,J., Duncan,S. and Flint,H. (2010) Direct submision GenBank.