ISBch1
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABFU01000007 | ND | Bacillus coahuilensis | Bacillus coahuilensis m4-4 |
DNA section
IS Length : 1709 bp
Ends
IR Length : 15
IRL : GAAACCACTGAAAAACACTTCCATAAAAATGGAAGTGTAAGGGTGTCGCT
IRR : GAAACCACTGAAAAAGTACCCTTTAAAACTTATATTTACTCAATAAAATT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGAATCAAGG | GGACGGTTC | CAGTGATTCT | 9 |
DNA sequence
GAAACCACTGAAAAACACTTCCATAAAAATGGAAGTGTAAGGGTGTCGCTAAATAAAATAAAGAAGAACCCCGATTTTGGTATAATAGAGTTGACTAGAA
ACTAAAACCAAAGGGGGCTCTTCTTTATGCTTAAAGAAAAAGATATGCAGTTAAGCATGTACTCATTATTATACTATAAAATCCCTAAGAAACATACGCT
TCGCATACTCAAGGAAGAATTAGACTTCAGTTTTATTAATAAACTTCTCGAAAATACATACTCCAAATACTACGGGAGACCTGCCAAAGAACCAGAATTA
ATGCTAAAGCTATTAATCTTACAACGACTTTATAATCTCTCTGACGAGAGAGTCATCGAAGATGCTTCTTTAAATTTAGCTTATATGTACTTTTTAGATA
TTAACCCAGAGAAAGAGCTGCCTCACCCTAGTTTATTGGCCAAGTTTAGAGTCAAAAAACTTGAAGCTAACGATCTAACCACAGATGAAATCATCACTGA
GGTTAGTAAACAATGCGTGGAAAAAGGTATCGTGAAAGAAACTGGAGTAACTATTGATACTACGCATACTGAGGCAAATACGTTTAAAGCGACTCCTGAG
AGAGTTATGAAAAAATTGGCTTATAAAATCTTTAACACCATGAGAGAAGAAATAGGAGAAATCCCCTCAACGGTTAATCAAGATGTTCCTGAATACAAAG
TAATTGAAGATCATCAAGAAGCAAAATCAATAATGAAGAATTATCTAGAAGAAACAATTCTTCAAATAGAGGAAACGATTCATCCAGAACACACACCAAA
AACAAAAGAAGTAATAGAGAACGCGAAAGCGATTCTAAACGATCCTAAATTTATTCAACAAAAAGGTGTTCGTTCAATAGTGGATCAAGAAGCGAGAGTA
GGAAGAAAAAGCAAAACAACAAACTTCTTTGGGTACAAAATGGAATACATCATGACAACGGAGGAACGACTGATTACAGCAGTAAGAGTAAATGATGGAG
CATACGTAGATGGAACGCAGTTCCATGAATTATTGGAACTCACTCAGAAAAGTGGGTTAGTTATCCCAGAGGTCTATGGTGATAGAGCATACTTTAGAAA
ACATATATTAGATGATATAAAGAAGATTGGAGCAAGTCCCTACATACCTGTGAGTGCCATGGCGTATAGGCTAGACGAAGATAAGTTTCAATATAACAAG
GATTCAGATGAGTGGTTTTGTGTTCAGGGGAATAAAACTATTAGAAAAAAGAAAACGAACAAGAATAAAAGAGATCAAGAATACTATAAATACTATTTTG
AAAAAGAAGTGTGCAGAGAATGTCCTCTTCGAGAGTCCTGTGCAAAAAAAACAGTGGGTAGAGTGTTAACTGTTGGACTTAATACTCCTGAGTTCTATGA
GTACAGTCAACTTCAAAAGACTGACGAGTTTAAAGAGAGATATAAGAAAAGAGCTTGCCAAGAATGGAAAAATGGTGAAATGAAGAATTTTCACGGGTTA
GATCGTGCCAGAGGGTACGGTCTTAAAAGCATGACCACACAAGCAAAATTAACCGCGTTAGCGGTCAACTTAAAGAGGGTAGCAAGCATACTATCCTCTA
AAAACACTAATAATCTTTTGGTTTTTACCACATTTAGGATAATTGGACCCAAGATCAATAATTTTATTGAGTAAATATAAGTTTTAAAGGGTACTTTTTC
AGTGGTTTC
ACTAAAACCAAAGGGGGCTCTTCTTTATGCTTAAAGAAAAAGATATGCAGTTAAGCATGTACTCATTATTATACTATAAAATCCCTAAGAAACATACGCT
TCGCATACTCAAGGAAGAATTAGACTTCAGTTTTATTAATAAACTTCTCGAAAATACATACTCCAAATACTACGGGAGACCTGCCAAAGAACCAGAATTA
ATGCTAAAGCTATTAATCTTACAACGACTTTATAATCTCTCTGACGAGAGAGTCATCGAAGATGCTTCTTTAAATTTAGCTTATATGTACTTTTTAGATA
TTAACCCAGAGAAAGAGCTGCCTCACCCTAGTTTATTGGCCAAGTTTAGAGTCAAAAAACTTGAAGCTAACGATCTAACCACAGATGAAATCATCACTGA
GGTTAGTAAACAATGCGTGGAAAAAGGTATCGTGAAAGAAACTGGAGTAACTATTGATACTACGCATACTGAGGCAAATACGTTTAAAGCGACTCCTGAG
AGAGTTATGAAAAAATTGGCTTATAAAATCTTTAACACCATGAGAGAAGAAATAGGAGAAATCCCCTCAACGGTTAATCAAGATGTTCCTGAATACAAAG
TAATTGAAGATCATCAAGAAGCAAAATCAATAATGAAGAATTATCTAGAAGAAACAATTCTTCAAATAGAGGAAACGATTCATCCAGAACACACACCAAA
AACAAAAGAAGTAATAGAGAACGCGAAAGCGATTCTAAACGATCCTAAATTTATTCAACAAAAAGGTGTTCGTTCAATAGTGGATCAAGAAGCGAGAGTA
GGAAGAAAAAGCAAAACAACAAACTTCTTTGGGTACAAAATGGAATACATCATGACAACGGAGGAACGACTGATTACAGCAGTAAGAGTAAATGATGGAG
CATACGTAGATGGAACGCAGTTCCATGAATTATTGGAACTCACTCAGAAAAGTGGGTTAGTTATCCCAGAGGTCTATGGTGATAGAGCATACTTTAGAAA
ACATATATTAGATGATATAAAGAAGATTGGAGCAAGTCCCTACATACCTGTGAGTGCCATGGCGTATAGGCTAGACGAAGATAAGTTTCAATATAACAAG
GATTCAGATGAGTGGTTTTGTGTTCAGGGGAATAAAACTATTAGAAAAAAGAAAACGAACAAGAATAAAAGAGATCAAGAATACTATAAATACTATTTTG
AAAAAGAAGTGTGCAGAGAATGTCCTCTTCGAGAGTCCTGTGCAAAAAAAACAGTGGGTAGAGTGTTAACTGTTGGACTTAATACTCCTGAGTTCTATGA
GTACAGTCAACTTCAAAAGACTGACGAGTTTAAAGAGAGATATAAGAAAAGAGCTTGCCAAGAATGGAAAAATGGTGAAATGAAGAATTTTCACGGGTTA
GATCGTGCCAGAGGGTACGGTCTTAAAAGCATGACCACACAAGCAAAATTAACCGCGTTAGCGGTCAACTTAAAGAGGGTAGCAAGCATACTATCCTCTA
AAAACACTAATAATCTTTTGGTTTTTACCACATTTAGGATAATTGGACCCAAGATCAATAATTTTATTGAGTAAATATAAGTTTTAAAGGGTACTTTTTC
AGTGGTTTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1548 bp | 515 aa | 127 | 1674 | + | No |
Chemistry : DDE
ORF sequence :
MLKEKDMQLSMYSLLYYKIPKKHTLRILKEELDFSFINKLLENTYSKYYGRPAKEPELMLKLLILQRLYNLSDERVIEDASLNLAYMYFLDINPEKELPH
PSLLAKFRVKKLEANDLTTDEIITEVSKQCVEKGIVKETGVTIDTTHTEANTFKATPERVMKKLAYKIFNTMREEIGEIPSTVNQDVPEYKVIEDHQEAK
SIMKNYLEETILQIEETIHPEHTPKTKEVIENAKAILNDPKFIQQKGVRSIVDQEARVGRKSKTTNFFGYKMEYIMTTEERLITAVRVNDGAYVDGTQFH
ELLELTQKSGLVIPEVYGDRAYFRKHILDDIKKIGASPYIPVSAMAYRLDEDKFQYNKDSDEWFCVQGNKTIRKKKTNKNKRDQEYYKYYFEKEVCRECP
LRESCAKKTVGRVLTVGLNTPEFYEYSQLQKTDEFKERYKKRACQEWKNGEMKNFHGLDRARGYGLKSMTTQAKLTALAVNLKRVASILSSKNTNNLLVF
TTFRIIGPKINNFIE
PSLLAKFRVKKLEANDLTTDEIITEVSKQCVEKGIVKETGVTIDTTHTEANTFKATPERVMKKLAYKIFNTMREEIGEIPSTVNQDVPEYKVIEDHQEAK
SIMKNYLEETILQIEETIHPEHTPKTKEVIENAKAILNDPKFIQQKGVRSIVDQEARVGRKSKTTNFFGYKMEYIMTTEERLITAVRVNDGAYVDGTQFH
ELLELTQKSGLVIPEVYGDRAYFRKHILDDIKKIGASPYIPVSAMAYRLDEDKFQYNKDSDEWFCVQGNKTIRKKKTNKNKRDQEYYKYYFEKEVCRECP
LRESCAKKTVGRVLTVGLNTPEFYEYSQLQKTDEFKERYKKRACQEWKNGEMKNFHGLDRARGYGLKSMTTQAKLTALAVNLKRVASILSSKNTNNLLVF
TTFRIIGPKINNFIE
Blast result :
Comments
ISBch1 is 43% aa similar to ISLlo2.
References
1] ISfinder annotation (2010)
2] Alcaraz,L.D., Olmedo,G., Bonilla,G., Cerritos,R., Hernandez,G., Cruz,A., Ramirez,E., Putonti,C., Jimenez,B., Martinez,E., Lopez,V., Arvizu,J.L., Ayala,F., Razo,F., Caballero,J., Siefert,J., Eguiarte,L., Vielle,J.P., Martinez,O., Souza,V.,Herrera-Estrella,A. and Herrera-Estrella,L. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (15), 5803-5808 .
2] Alcaraz,L.D., Olmedo,G., Bonilla,G., Cerritos,R., Hernandez,G., Cruz,A., Ramirez,E., Putonti,C., Jimenez,B., Martinez,E., Lopez,V., Arvizu,J.L., Ayala,F., Razo,F., Caballero,J., Siefert,J., Eguiarte,L., Vielle,J.P., Martinez,O., Souza,V.,Herrera-Estrella,A. and Herrera-Estrella,L. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (15), 5803-5808 .