ISBas1
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_EQ999692 | ND | Bacteroides sp. | Bacteroides sp. 4_3_47FAA |
DNA section
IS Length : 1757 bp
Ends
IR Length : 15
IRL : GAGGGCACTGAAAAAATTTCCTTGCAGCTTTTTAAAGAATTAAATCTGCA
IRR : GAGGGCACTGAAAAAGGTATCCTCTTAAGATTTAATCCCAATCTTTAAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGGAGAAGA | GTTTTTCT | TTTTCCTTTT | 8 |
DNA sequence
GAGGGCACTGAAAAAATTTCCTTGCAGCTTTTTAAAGAATTAAATCTGCACATAGCCTGTATATTATTTGGCTATGTGCAGATTTTTTGTACCTTAATGC
CATAATATTTAAGGTCCATGCTATCACCACAACAAGAACTTCCGCTCAGTGAATATAGTTCACTCTACGATATAGTTGTCCCCCAAGACAATCTTCTTCG
CCGCATTAATGATCTTGTAGATTTCACTTTTGTCTATCAGGAACTTGCCAATAAGTATTGCAAGGATAATGGTCGAACAGCAGAATCCCCTATTCGCATG
TTCAAGTATCTTCTGCTGAAGACCATATACGATATTTCTGACGTAGATGTCGTAGAGCGTTCCCGTTATGATATGTCCTTTAAGTATTTCCTTGGCATGG
CTCCAGAGGAAGACGTTATTAATGCCAGCAGTCTTTGTAAGTTCCGCAAGTTACGGCTGGAAGACATGGATCTTATGAACCTGCTAATCCAGAAGAGCGT
AGAAATAGCGATAGAGAAAGGCATCATAAAATCAAGGACTATTATTGTAGATGCTACTCATACAGAAGCCAGGTCTAACCCGTACTCCCCGATAGAGATT
CTGCGACTCCGTTCAAAGCAACTCCGTAAGGTACTTTATGCCATGGATGATAATATCAAGCAAACCCTGCCGTCTAAAAATAAAGAGGATGATCTTGCGC
ATGAGTTGGATTATACCAAAGACCTTCTGAAACTTATCACTTCAGATGCCAGTCTTTCAGAAGTGCCTGCAGTAAAGCAGCGACTTAACATGCTCAAGGA
AACGCTTTCAGATATAGAGGATCACTATACGACCTCAAAGGATGCAGATGCCCGCATTGGTCATAAAACAGAAGACAGTTCTTTTTTCGGATATAAGACT
CACATTGCAATGAGTGATGAGCGTATCATAACAGCCGCTACTGTTACTTCTGGCGAAAAGGGCGATGGGCCTCAGTTGAAAGAGCTTGTGGAGCAAAGCA
GAAAAAACGGAATGGAAGTGAACACTGTCATTGGTGATACCGCATACTCCGGATCGGAAAACCTTAGACTGGCAGAAGATGAAGAGAAGGGATTTACTTT
GGTATCAAAATTACATCCGGCCATAAGTCATGGACTCAGGAAAGATGAAGACAAGTTTGATTATAACAAGGATGCAGGCATGTTTGTTTGTCCTGCCGGT
CATATGGCAATCAGAAAAGCAAGGCAGGGGAAAAAGGATGGGAAATGGAATCAATCCATGACTTATTTCTTTGATATAGAGAAATGCAAGACTTGTTCAC
GAAGAGAAGGATGCTACAAGGAGGGGGCTAAAAGCAAGACCTATAGTATACCTATCAGGAATGAAGAACAGAAAAGGCAGCTTGGATTCCAGAAATCACA
AGAATTTAAAGATATAGCTCGTCAAAGATACAAGATTGAGGCAAAGAATGCAGAATTAAAGCAGGTATACGGTTATGATAAGGCACTGTCGTATGGGCTG
GATGGTATGCAGATGCAAGGTGCTATGACCATCTTTGCCGCAAATATCAAGAGAATATTGAAACTAAGCTAAAAACACTTATAAAAATTACCCACGTATA
ATATGATGGCCTTACTGACTATACAAGGCCGAATATAAACTCCTATCAAGATATATAAAAGCAGATTGCAAAACCGATATAAAGGCTAATACAATCTGCT
TTCGTCTTTTTAAAGATTGGGATTAAATCTTAAGAGGATACCTTTTTCAGTGCCCTC
CATAATATTTAAGGTCCATGCTATCACCACAACAAGAACTTCCGCTCAGTGAATATAGTTCACTCTACGATATAGTTGTCCCCCAAGACAATCTTCTTCG
CCGCATTAATGATCTTGTAGATTTCACTTTTGTCTATCAGGAACTTGCCAATAAGTATTGCAAGGATAATGGTCGAACAGCAGAATCCCCTATTCGCATG
TTCAAGTATCTTCTGCTGAAGACCATATACGATATTTCTGACGTAGATGTCGTAGAGCGTTCCCGTTATGATATGTCCTTTAAGTATTTCCTTGGCATGG
CTCCAGAGGAAGACGTTATTAATGCCAGCAGTCTTTGTAAGTTCCGCAAGTTACGGCTGGAAGACATGGATCTTATGAACCTGCTAATCCAGAAGAGCGT
AGAAATAGCGATAGAGAAAGGCATCATAAAATCAAGGACTATTATTGTAGATGCTACTCATACAGAAGCCAGGTCTAACCCGTACTCCCCGATAGAGATT
CTGCGACTCCGTTCAAAGCAACTCCGTAAGGTACTTTATGCCATGGATGATAATATCAAGCAAACCCTGCCGTCTAAAAATAAAGAGGATGATCTTGCGC
ATGAGTTGGATTATACCAAAGACCTTCTGAAACTTATCACTTCAGATGCCAGTCTTTCAGAAGTGCCTGCAGTAAAGCAGCGACTTAACATGCTCAAGGA
AACGCTTTCAGATATAGAGGATCACTATACGACCTCAAAGGATGCAGATGCCCGCATTGGTCATAAAACAGAAGACAGTTCTTTTTTCGGATATAAGACT
CACATTGCAATGAGTGATGAGCGTATCATAACAGCCGCTACTGTTACTTCTGGCGAAAAGGGCGATGGGCCTCAGTTGAAAGAGCTTGTGGAGCAAAGCA
GAAAAAACGGAATGGAAGTGAACACTGTCATTGGTGATACCGCATACTCCGGATCGGAAAACCTTAGACTGGCAGAAGATGAAGAGAAGGGATTTACTTT
GGTATCAAAATTACATCCGGCCATAAGTCATGGACTCAGGAAAGATGAAGACAAGTTTGATTATAACAAGGATGCAGGCATGTTTGTTTGTCCTGCCGGT
CATATGGCAATCAGAAAAGCAAGGCAGGGGAAAAAGGATGGGAAATGGAATCAATCCATGACTTATTTCTTTGATATAGAGAAATGCAAGACTTGTTCAC
GAAGAGAAGGATGCTACAAGGAGGGGGCTAAAAGCAAGACCTATAGTATACCTATCAGGAATGAAGAACAGAAAAGGCAGCTTGGATTCCAGAAATCACA
AGAATTTAAAGATATAGCTCGTCAAAGATACAAGATTGAGGCAAAGAATGCAGAATTAAAGCAGGTATACGGTTATGATAAGGCACTGTCGTATGGGCTG
GATGGTATGCAGATGCAAGGTGCTATGACCATCTTTGCCGCAAATATCAAGAGAATATTGAAACTAAGCTAAAAACACTTATAAAAATTACCCACGTATA
ATATGATGGCCTTACTGACTATACAAGGCCGAATATAAACTCCTATCAAGATATATAAAAGCAGATTGCAAAACCGATATAAAGGCTAATACAATCTGCT
TTCGTCTTTTTAAAGATTGGGATTAAATCTTAAGAGGATACCTTTTTCAGTGCCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 118 | 1572 | + | No |
Chemistry : DDE
ORF sequence :
MLSPQQELPLSEYSSLYDIVVPQDNLLRRINDLVDFTFVYQELANKYCKDNGRTAESPIRMFKYLLLKTIYDISDVDVVERSRYDMSFKYFLGMAPEEDV
INASSLCKFRKLRLEDMDLMNLLIQKSVEIAIEKGIIKSRTIIVDATHTEARSNPYSPIEILRLRSKQLRKVLYAMDDNIKQTLPSKNKEDDLAHELDYT
KDLLKLITSDASLSEVPAVKQRLNMLKETLSDIEDHYTTSKDADARIGHKTEDSSFFGYKTHIAMSDERIITAATVTSGEKGDGPQLKELVEQSRKNGME
VNTVIGDTAYSGSENLRLAEDEEKGFTLVSKLHPAISHGLRKDEDKFDYNKDAGMFVCPAGHMAIRKARQGKKDGKWNQSMTYFFDIEKCKTCSRREGCY
KEGAKSKTYSIPIRNEEQKRQLGFQKSQEFKDIARQRYKIEAKNAELKQVYGYDKALSYGLDGMQMQGAMTIFAANIKRILKLS
INASSLCKFRKLRLEDMDLMNLLIQKSVEIAIEKGIIKSRTIIVDATHTEARSNPYSPIEILRLRSKQLRKVLYAMDDNIKQTLPSKNKEDDLAHELDYT
KDLLKLITSDASLSEVPAVKQRLNMLKETLSDIEDHYTTSKDADARIGHKTEDSSFFGYKTHIAMSDERIITAATVTSGEKGDGPQLKELVEQSRKNGME
VNTVIGDTAYSGSENLRLAEDEEKGFTLVSKLHPAISHGLRKDEDKFDYNKDAGMFVCPAGHMAIRKARQGKKDGKWNQSMTYFFDIEKCKTCSRREGCY
KEGAKSKTYSIPIRNEEQKRQLGFQKSQEFKDIARQRYKIEAKNAELKQVYGYDKALSYGLDGMQMQGAMTIFAANIKRILKLS
Blast result :
Comments
ISBas1 is 42% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M.,
Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. ( 2009) Direct submission GenBank.
2] Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M.,
Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. ( 2009) Direct submission GenBank.