ISAme2
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009633 | ND | Alkaliphilus metalliredigens | Alkaliphilus metalliredigens QYMF |
DNA section
IS Length : 1838 bp
Ends
IR Length : 10
IRL : GGGACGGTTCGGGATCAGTGAAAAAGTCTCTTATAAAGAGTTAATAATAT
IRR : GGGACGGTTCTTTCGATTAAGTGATGGAGATAAGAGTCTGTACAATACCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAAATCCAATCAAG | TGTGATTTCT | 0 |
DNA sequence
GGGACGGTTCGGGATCAGTGAAAAAGTCTCTTATAAAGAGTTAATAATATGATACTAGCTTTTGCTTGAAAACGTATAAAAACTAGTGAAAGTATTGAAT
TCACTAGTTTTGATCAGATGAAAACCCCCATATATGGTATAATATAAGTACGACCAAATACAACCAATAGGGGGTAATATGCTTCGACTAAAGCCAAAGC
AAATATCTTTTCACTCATCATTATATAATAAAATACCAGAAAATCATATACTAAAAAGAATAGATTCAGTAGTAGATTTTAGCTTTATCAATGGTTTACT
AGAGAATAGCTATTGCAAAAAATTTGGACGACCTGCGAAAGAACCGGAATTGATGTGCAAGTTACTTTTTTTGCAGCATTTATATAATCTATCAGATGAA
AAGGTCAAAGAAGAAGCGAGTTTAAACCTAGCATATATGTACTTTATTGGTATTAATCCAGAAGATTCTCTTCCGGATAAAAGTCTTTTATCTAAATTCA
GAACACAACGACTTGGACAGTCAACGCTAGATGAAATCACCACAGAAATCGTAAGACAATGTGTAGTAAAAGGAATCGTTGAGGGAAAGAGTGTAAGTAT
TGATGCTACCCATATAGAGGCGAATACAATAAAGAAAACTCCAGAACGATTAATGAAGCATTTAGGAAGAAAAATCATCAAGACATATGGAGAAGAAACA
TCCCAAGATCTAGAAGGTATACCTGAGGTGCCAGACTATAAAGAAATTACAGATCATAAAGAGGCAAAAGCTGCAATGAAAGAATACCTAGAAATTGTAA
TTGATCAAGCAGAGAGAAATATATCTACTAACGAGCAAAAAACAGCAGAAGTAATTAAACAGGCTAAAGATATATTAAATGATCCCAAGTTTATCAATCA
AAAAGGGATACGCTCATTAATAGATGTAGATGCAAGAGTTGGACGTAAAAGTAAAACGCAAGATTTTTTTGTTTAAAACGGAATTTATTATGACAACAGA
TGAACGAATTATCACCTCGATAAATACAGCCGATGGAGCGTATCCAGATGGTAACCATGTAAAAGAAATGCTGGACCAAACAAAGAAAACCGGCATAGCT
GTTGAAGAAGTTTATGGAGATAAAGCATATTTTAGAAAATCAATATTAGATGATATAAAAGAAATGAAAGCAAAAGCTTTCATACCAGTTAGTACATCCG
CTTACAGAATTGATGAAAGTGAGTATACATATAACAAAGACTCAGATGAATGGCAGTGTAGTCAAGGAAATACAACCATAAATAAAAAGCATTATAAATA
TAAAAGTAAAGCAAGAGAAAGAGCAGGTTATAAATACTATTTTGAAATGAGTCAATGCAAAGCATGTCCTAAACATGATGAATGTGCTAAAAAAAGCGCC
AGAAAAATACTTATAGTAGGTTTAAATGCTTCAGAATTTTATGAAATATCGCAGTATCAGAAAACAGATGAGTTCAAGGAACAATATAAAAAGAGAGCTT
CTATTGAAGGTAAAAATGCCGAACTCAAAAGATTTCATGGGCTACATCGAGCAAGAGGATATGGTTTAATAAGTGTGTCAAAACAATCAAAGCTAGCTGC
AATAGCGGTAAATATTAAGAGGATAGCAGCAATAATCTCCTCTTTTTTATCTAATTTTAAGGGTATTTTTGAAATGACAGACTATTTTTCGGATTTGTCG
AAATTTCTTGCGATTTAACGAAAAAAAGGACCAGTTTTTCACTGGTCCCGGATGGTTCTGTTGATTAATCGTTAAAATTTAAGATTGTAGGTATTGTACA
GACTCTTATCTCCATCACTTAATCGAAAGAACCGTCCC
TCACTAGTTTTGATCAGATGAAAACCCCCATATATGGTATAATATAAGTACGACCAAATACAACCAATAGGGGGTAATATGCTTCGACTAAAGCCAAAGC
AAATATCTTTTCACTCATCATTATATAATAAAATACCAGAAAATCATATACTAAAAAGAATAGATTCAGTAGTAGATTTTAGCTTTATCAATGGTTTACT
AGAGAATAGCTATTGCAAAAAATTTGGACGACCTGCGAAAGAACCGGAATTGATGTGCAAGTTACTTTTTTTGCAGCATTTATATAATCTATCAGATGAA
AAGGTCAAAGAAGAAGCGAGTTTAAACCTAGCATATATGTACTTTATTGGTATTAATCCAGAAGATTCTCTTCCGGATAAAAGTCTTTTATCTAAATTCA
GAACACAACGACTTGGACAGTCAACGCTAGATGAAATCACCACAGAAATCGTAAGACAATGTGTAGTAAAAGGAATCGTTGAGGGAAAGAGTGTAAGTAT
TGATGCTACCCATATAGAGGCGAATACAATAAAGAAAACTCCAGAACGATTAATGAAGCATTTAGGAAGAAAAATCATCAAGACATATGGAGAAGAAACA
TCCCAAGATCTAGAAGGTATACCTGAGGTGCCAGACTATAAAGAAATTACAGATCATAAAGAGGCAAAAGCTGCAATGAAAGAATACCTAGAAATTGTAA
TTGATCAAGCAGAGAGAAATATATCTACTAACGAGCAAAAAACAGCAGAAGTAATTAAACAGGCTAAAGATATATTAAATGATCCCAAGTTTATCAATCA
AAAAGGGATACGCTCATTAATAGATGTAGATGCAAGAGTTGGACGTAAAAGTAAAACGCAAGATTTTTTTGTTTAAAACGGAATTTATTATGACAACAGA
TGAACGAATTATCACCTCGATAAATACAGCCGATGGAGCGTATCCAGATGGTAACCATGTAAAAGAAATGCTGGACCAAACAAAGAAAACCGGCATAGCT
GTTGAAGAAGTTTATGGAGATAAAGCATATTTTAGAAAATCAATATTAGATGATATAAAAGAAATGAAAGCAAAAGCTTTCATACCAGTTAGTACATCCG
CTTACAGAATTGATGAAAGTGAGTATACATATAACAAAGACTCAGATGAATGGCAGTGTAGTCAAGGAAATACAACCATAAATAAAAAGCATTATAAATA
TAAAAGTAAAGCAAGAGAAAGAGCAGGTTATAAATACTATTTTGAAATGAGTCAATGCAAAGCATGTCCTAAACATGATGAATGTGCTAAAAAAAGCGCC
AGAAAAATACTTATAGTAGGTTTAAATGCTTCAGAATTTTATGAAATATCGCAGTATCAGAAAACAGATGAGTTCAAGGAACAATATAAAAAGAGAGCTT
CTATTGAAGGTAAAAATGCCGAACTCAAAAGATTTCATGGGCTACATCGAGCAAGAGGATATGGTTTAATAAGTGTGTCAAAACAATCAAAGCTAGCTGC
AATAGCGGTAAATATTAAGAGGATAGCAGCAATAATCTCCTCTTTTTTATCTAATTTTAAGGGTATTTTTGAAATGACAGACTATTTTTCGGATTTGTCG
AAATTTCTTGCGATTTAACGAAAAAAAGGACCAGTTTTTCACTGGTCCCGGATGGTTCTGTTGATTAATCGTTAAAATTTAAGATTGTAGGTATTGTACA
GACTCTTATCTCCATCACTTAATCGAAAGAACCGTCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1540 bp | 513 aa | 179 | 1718 | + | No |
Chemistry : DDE
ORF sequence :
MLRLKPKQISFHSSLYNKIPENHILKRIDSVVDFSFINGLLENSYCKKFGRPAKEPELMCKLLFLQHLYNLSDEKVKEEASLNLAYMYFIGINPEDSLPD
KSLLSKFRTQRLGQSTLDEITTEIVRQCVVKGIVEGKSVSIDATHIEANTIKKTPERLMKHLGRKIIKTYGEETSQDLEGIPEVPDYKEITDHKEAKAAM
KEYLEIVIDQAERNISTNEQKTAEVIKQAKDILNDPKFINQKGIRSLIDVDARVGRKSKTQDFFLFKTEFIMTTDERIITSINTADGAYPDGNHVKEMLD
QTKKTGIAVEEVYGDKAYFRKSILDDIKEMKAKAFIPVSTSAYRIDESEYTYNKDSDEWQCSQGNTTINKKHYKYKSKARERAGYKYYFEMSQCKACPKH
DECAKKSARKILIVGLNASEFYEISQYQKTDEFKEQYKKRASIEGKNAELKRFHGLHRARGYGLISVSKQSKLAAIAVNIKRIAAIISSFLSNFKGIFEM
TDYFSDLSKFLAI
KSLLSKFRTQRLGQSTLDEITTEIVRQCVVKGIVEGKSVSIDATHIEANTIKKTPERLMKHLGRKIIKTYGEETSQDLEGIPEVPDYKEITDHKEAKAAM
KEYLEIVIDQAERNISTNEQKTAEVIKQAKDILNDPKFINQKGIRSLIDVDARVGRKSKTQDFFLFKTEFIMTTDERIITSINTADGAYPDGNHVKEMLD
QTKKTGIAVEEVYGDKAYFRKSILDDIKEMKAKAFIPVSTSAYRIDESEYTYNKDSDEWQCSQGNTTINKKHYKYKSKARERAGYKYYFEMSQCKACPKH
DECAKKSARKILIVGLNASEFYEISQYQKTDEFKEQYKKRASIEGKNAELKRFHGLHRARGYGLISVSKQSKLAAIAVNIKRIAAIISSFLSNFKGIFEM
TDYFSDLSKFLAI
Blast result :
Comments
ISAme2 is 44% aa similar to ISBfun3.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J., Fields,M. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J., Fields,M. and Richardson,P. (2007) Direct submission GenBank.