ISFba3
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAXX01000002 | ND | Flavobacteria bacterium | Flavobacteria bacterium BAL38 |
DNA section
IS Length : 1756 bp
Ends
IR Length : 15
IRL : GAGGGCACTGAAAAAGTTCCTTTAAATAATAATAATTGCAATAATTTAAG
IRR : GAGGGCACTGAAAAACATCGACTATTTTGATTAGTACCGTTTTTAGTCAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAAAACCCCG | CAAATTTTT | GACCTATTTT | 9 |
| CTAACAAATT | ATTTTATCGG | 0 |
DNA sequence
GAGGGCACTGAAAAAGTTCCTTTAAATAATAATAATTGCAATAATTTAAGGAGTAGAAAACTTAGTTTTTCTGCTCCTTTTTTCGTATATTTAGCTCTAA
TTATAGAGTTTTTTAGATGTTATTAAAGCAGCAAACAATACAATTTAGTGCTCATTCTACGTTGTATGATTTAATAGTTCCAAAGGAAAATATATTAAGA
AAAATCAATGATTTAATTGATTTTTCCTTTATTTATGATGAGTTTTTAAACAAATACTGCACAACAAATGGTCGTATGGCAGAAAGTCCTGTTCGTATGT
TTAAGTATTTACTTCTTAAAACAATTTACACTATTTCCGATGTAGATGTGGTGGAACGTTCTCAATATGATATGTCTTTTAAATATTTTTTGGATATGAA
TCCTGAAGACGATGTTATCAATCCAAGTTCGTTGACAAAGTTCAGAAAACTACGTTTGAAAGACACCGACTTATTAAATCTATTGATAAACAAAACAGTA
ACTATTGCTATTGAAAAAGGAATAATTCGTTCGAAGTCTATTATCGTTGATGCCACTCATACTTTATCAAGATCTAATCCGTTTTTAGCCATCGATGTAT
TGAGAGAACGCTCCAAGTTACTTCGAAAAACAATATACACCTTTGACGACCAATTTAAAGAACGTATGCCTCAAAAGAATACCGACAATGATTTAGAAAA
GGAGTTGGTTTATTGTAAAGAATTAGAAAAACGTATCGAAAACGAGCCATCTATAAGTTCGATTCCTGCAGTGAAAGAGAAATTAAACCTGTTAAAGGAA
ACTGTGGAGGATACTCAAGAAAACCTAACTTTATCAAAAGATACCGATGCAAAAATAGGTCATAAATCTGCTGAGAGTTCCTTCTTTGGATACAAAACTC
ATTTGGCAATGACTGAAGAGCGCATCATTACTGCAGCCGTAGTAACATCGGGTGAAAAAGGTGATGGACCAGAATTGCCTAAGCTTATAGAAATTAGTCA
AGAAAATGGAATTGATGTAGACACCATTATTGGTGATGCTGCTTACTCTGGAAAAGAAAATCTTAAAATCACAAGTGAGCAAAATATTAAAGTAGTAGCA
AAATTAAATCCATCAATAACACAAGGAAACAGAAAAGATGCCGATAAATTTGATTATAATAAAGATGCCGATAGGTTTGTTTGCCCAGCAGGACATTTGG
CAATAAAAAAAGCACGTGGTGGAAGTAAAAATATTGGAATAAATCAAGTAGACACTTATTATTTTGATGTCGAAAAATGCAAATCTTGTCCTTTAAAAAA
TGGTTGTTACAAAGAAGGAGCTAAAACTAAAACATATTCAGTATCTATAAAATCAGAACTACATCAAGACCAAATTTTTTTTCAAGAAACAGAATATTAC
AAAGAAAAAGCAAAACATCGATACAAGATAGAAGCCAAAAATAGCGAATTAAAAAATGTATACGGTTATGATAAAGCAATTTTATACGGCATTACCAATA
TGCAAATGCAAGGTGCAATAGCAATATTCACAGTAAACTTAAAAAGAATTCTCAAATTAATGTAGAAAACGCAATCTGCTCAGGTATTTTGAAAAAACAA
CCTGTAAAAGCCAAAAACAAACTTATACAACCTCCAATAAAAAACAGTTGCAAAAAGAAAAACGCTCATAACGGATATTTAAAATCCCGTTACAAGCGTT
TTTTTATTGACTAAAAACGGTACTAATCAAAATAGTCGATGTTTTTCAGTGCCCTC
TTATAGAGTTTTTTAGATGTTATTAAAGCAGCAAACAATACAATTTAGTGCTCATTCTACGTTGTATGATTTAATAGTTCCAAAGGAAAATATATTAAGA
AAAATCAATGATTTAATTGATTTTTCCTTTATTTATGATGAGTTTTTAAACAAATACTGCACAACAAATGGTCGTATGGCAGAAAGTCCTGTTCGTATGT
TTAAGTATTTACTTCTTAAAACAATTTACACTATTTCCGATGTAGATGTGGTGGAACGTTCTCAATATGATATGTCTTTTAAATATTTTTTGGATATGAA
TCCTGAAGACGATGTTATCAATCCAAGTTCGTTGACAAAGTTCAGAAAACTACGTTTGAAAGACACCGACTTATTAAATCTATTGATAAACAAAACAGTA
ACTATTGCTATTGAAAAAGGAATAATTCGTTCGAAGTCTATTATCGTTGATGCCACTCATACTTTATCAAGATCTAATCCGTTTTTAGCCATCGATGTAT
TGAGAGAACGCTCCAAGTTACTTCGAAAAACAATATACACCTTTGACGACCAATTTAAAGAACGTATGCCTCAAAAGAATACCGACAATGATTTAGAAAA
GGAGTTGGTTTATTGTAAAGAATTAGAAAAACGTATCGAAAACGAGCCATCTATAAGTTCGATTCCTGCAGTGAAAGAGAAATTAAACCTGTTAAAGGAA
ACTGTGGAGGATACTCAAGAAAACCTAACTTTATCAAAAGATACCGATGCAAAAATAGGTCATAAATCTGCTGAGAGTTCCTTCTTTGGATACAAAACTC
ATTTGGCAATGACTGAAGAGCGCATCATTACTGCAGCCGTAGTAACATCGGGTGAAAAAGGTGATGGACCAGAATTGCCTAAGCTTATAGAAATTAGTCA
AGAAAATGGAATTGATGTAGACACCATTATTGGTGATGCTGCTTACTCTGGAAAAGAAAATCTTAAAATCACAAGTGAGCAAAATATTAAAGTAGTAGCA
AAATTAAATCCATCAATAACACAAGGAAACAGAAAAGATGCCGATAAATTTGATTATAATAAAGATGCCGATAGGTTTGTTTGCCCAGCAGGACATTTGG
CAATAAAAAAAGCACGTGGTGGAAGTAAAAATATTGGAATAAATCAAGTAGACACTTATTATTTTGATGTCGAAAAATGCAAATCTTGTCCTTTAAAAAA
TGGTTGTTACAAAGAAGGAGCTAAAACTAAAACATATTCAGTATCTATAAAATCAGAACTACATCAAGACCAAATTTTTTTTCAAGAAACAGAATATTAC
AAAGAAAAAGCAAAACATCGATACAAGATAGAAGCCAAAAATAGCGAATTAAAAAATGTATACGGTTATGATAAAGCAATTTTATACGGCATTACCAATA
TGCAAATGCAAGGTGCAATAGCAATATTCACAGTAAACTTAAAAAGAATTCTCAAATTAATGTAGAAAACGCAATCTGCTCAGGTATTTTGAAAAAACAA
CCTGTAAAAGCCAAAAACAAACTTATACAACCTCCAATAAAAAACAGTTGCAAAAAGAAAAACGCTCATAACGGATATTTAAAATCCCGTTACAAGCGTT
TTTTTATTGACTAAAAACGGTACTAATCAAAATAGTCGATGTTTTTCAGTGCCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1449 bp | 482 aa | 117 | 1565 | + | No |
Chemistry : DDE
ORF sequence :
MLLKQQTIQFSAHSTLYDLIVPKENILRKINDLIDFSFIYDEFLNKYCTTNGRMAESPVRMFKYLLLKTIYTISDVDVVERSQYDMSFKYFLDMNPEDDV
INPSSLTKFRKLRLKDTDLLNLLINKTVTIAIEKGIIRSKSIIVDATHTLSRSNPFLAIDVLRERSKLLRKTIYTFDDQFKERMPQKNTDNDLEKELVYC
KELEKRIENEPSISSIPAVKEKLNLLKETVEDTQENLTLSKDTDAKIGHKSAESSFFGYKTHLAMTEERIITAAVVTSGEKGDGPELPKLIEISQENGID
VDTIIGDAAYSGKENLKITSEQNIKVVAKLNPSITQGNRKDADKFDYNKDADRFVCPAGHLAIKKARGGSKNIGINQVDTYYFDVEKCKSCPLKNGCYKE
GAKTKTYSVSIKSELHQDQIFFQETEYYKEKAKHRYKIEAKNSELKNVYGYDKAILYGITNMQMQGAIAIFTVNLKRILKLM
INPSSLTKFRKLRLKDTDLLNLLINKTVTIAIEKGIIRSKSIIVDATHTLSRSNPFLAIDVLRERSKLLRKTIYTFDDQFKERMPQKNTDNDLEKELVYC
KELEKRIENEPSISSIPAVKEKLNLLKETVEDTQENLTLSKDTDAKIGHKSAESSFFGYKTHLAMTEERIITAAVVTSGEKGDGPELPKLIEISQENGID
VDTIIGDAAYSGKENLKITSEQNIKVVAKLNPSITQGNRKDADKFDYNKDADRFVCPAGHLAIKKARGGSKNIGINQVDTYYFDVEKCKSCPLKNGCYKE
GAKTKTYSVSIKSELHQDQIFFQETEYYKEKAKHRYKIEAKNSELKNVYGYDKAILYGITNMQMQGAIAIFTVNLKRILKLM
Blast result :
Comments
ISFba3 is 44% aa similar to ISLlo2.
References
1] ISfinder annotation (2010)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.