ISCaa10

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001102 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 523 bp

Ends


Left end : AATCTCTTAGGGTTGAATTCCCCGCCGCTTGCGGCGTAAATTGCATATGTGAGTAAATATATCCATAAGAGTCATAATGTAACAGTGTTGTTGTATCATT II struct. : Yes
Right end : CGTTATGTGCAAAATCAAGGTAATACGTATGAGATGTTATACGAGAGTAGGCAGCTAAGGTTGTTTTGAATACCCCGCTGCTTGCGGCGGGGTTATTTAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTTTATTGCTTTTTTTATTCTAACCTTAT
GAAGGATTGAATTTTGGGAAAATGttat
CCATTCTCTTTTTTTAGTTTCATATTAT
ATTGTTTGGTTTTTTAAAAATGTTTTAT
CTGCGATCTTTTTTTGCTAATCTTTTAt
TTTCTATTAATTTTTGAAGGATACTTAT

DNA sequence

AATCTCTTAGGGTTGAATTCCCCGCCGCTTGCGGCGTAAATTGCATATGTGAGTAAATATATCCATAAGAGTCATAATGTAACAGTGTTGTTGTATCATT
TGGTCTTACCAGCAAAATATAGGCGTGTAGTTTTTGATAAGGAAGTAGATGAAGCCTTGAAAGAAATTTGTATTAAGATTGAAGAGCGTTATCAAATTAA
GTTTTTAGAAATAGGAACCGATAAAGACCATGTATATATGCTGGTACAGAGCGTTCCAACATATAGCATAACCAAACTCGTAACGCTAATCAAAAGTCTT
ACGGCAAGGGAAATATTCAAGCTGTGTCGGCAAGTAAAGAAGCAATTATGGGGTGGGGAGTTTTGGAGTGATGGATATTTTGCAACTACTGTAGGTAAGC
ATGGAGATGAGAAGATGATAGCGCGTTATGTGCAAAATCAAGGTAATACGTATGAGATGTTATACGAGAGTAGGCAGCTAAGGTTGTTTTGAATACCCCG
CTGCTTGCGGCGGGGTTATTTAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
408 bp147 aa85492+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSKYIHKSHNVTVLLYHLVLPAKYRRVVFDKEVDEALKEICIKIEERYQIKFLEIGTDKDHVYMLVQSVPTYSITKLVTLIKSLTAREIFKLCRQVKKQL
WGGEFWSDGYFATTVGKHGDEKMIARYVQNQGNTYEMLYESRQLRLF

 

Blast result :
Comments
ISCaa10 is present in seven copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
ISCaa10 is 64% aa similar to ISMba18.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.