ISCaa10
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001102 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 523 bp
Ends
Left end : AATCTCTTAGGGTTGAATTCCCCGCCGCTTGCGGCGTAAATTGCATATGTGAGTAAATATATCCATAAGAGTCATAATGTAACAGTGTTGTTGTATCATT II struct. : Yes
Right end : CGTTATGTGCAAAATCAAGGTAATACGTATGAGATGTTATACGAGAGTAGGCAGCTAAGGTTGTTTTGAATACCCCGCTGCTTGCGGCGGGGTTATTTAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTTTATTGCT | TTTT | TTATTCTAACC | TTAT |
GAAGGATTGA | ATTT | TGGGAAAATG | ttat |
CCATTCTCTT | TTTT | TAGTTTCATA | TTAT |
ATTGTTTGGT | TTTT | TAAAAATGTT | TTAT |
CTGCGATCTT | TTTT | TGCTAATCTT | TTAt |
TTTCTATTAA | TTTT | TGAAGGATAC | TTAT |
DNA sequence
AATCTCTTAGGGTTGAATTCCCCGCCGCTTGCGGCGTAAATTGCATATGTGAGTAAATATATCCATAAGAGTCATAATGTAACAGTGTTGTTGTATCATT
TGGTCTTACCAGCAAAATATAGGCGTGTAGTTTTTGATAAGGAAGTAGATGAAGCCTTGAAAGAAATTTGTATTAAGATTGAAGAGCGTTATCAAATTAA
GTTTTTAGAAATAGGAACCGATAAAGACCATGTATATATGCTGGTACAGAGCGTTCCAACATATAGCATAACCAAACTCGTAACGCTAATCAAAAGTCTT
ACGGCAAGGGAAATATTCAAGCTGTGTCGGCAAGTAAAGAAGCAATTATGGGGTGGGGAGTTTTGGAGTGATGGATATTTTGCAACTACTGTAGGTAAGC
ATGGAGATGAGAAGATGATAGCGCGTTATGTGCAAAATCAAGGTAATACGTATGAGATGTTATACGAGAGTAGGCAGCTAAGGTTGTTTTGAATACCCCG
CTGCTTGCGGCGGGGTTATTTAT
TGGTCTTACCAGCAAAATATAGGCGTGTAGTTTTTGATAAGGAAGTAGATGAAGCCTTGAAAGAAATTTGTATTAAGATTGAAGAGCGTTATCAAATTAA
GTTTTTAGAAATAGGAACCGATAAAGACCATGTATATATGCTGGTACAGAGCGTTCCAACATATAGCATAACCAAACTCGTAACGCTAATCAAAAGTCTT
ACGGCAAGGGAAATATTCAAGCTGTGTCGGCAAGTAAAGAAGCAATTATGGGGTGGGGAGTTTTGGAGTGATGGATATTTTGCAACTACTGTAGGTAAGC
ATGGAGATGAGAAGATGATAGCGCGTTATGTGCAAAATCAAGGTAATACGTATGAGATGTTATACGAGAGTAGGCAGCTAAGGTTGTTTTGAATACCCCG
CTGCTTGCGGCGGGGTTATTTAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
408 bp | 147 aa | 85 | 492 | + | No |
Chemistry : Y1
ORF sequence :
MSKYIHKSHNVTVLLYHLVLPAKYRRVVFDKEVDEALKEICIKIEERYQIKFLEIGTDKDHVYMLVQSVPTYSITKLVTLIKSLTAREIFKLCRQVKKQL
WGGEFWSDGYFATTVGKHGDEKMIARYVQNQGNTYEMLYESRQLRLF
WGGEFWSDGYFATTVGKHGDEKMIARYVQNQGNTYEMLYESRQLRLF
Blast result :
Comments
ISCaa10 is present in seven copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
ISCaa10 is 64% aa similar to ISMba18.
ISCaa10 is 64% aa similar to ISMba18.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.