ISCaa12

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010830 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 1209 bp

Ends


IR Length : 24/27

IRL : TGTACTAGTTTAGATTTAAACTGACAGGTACAATAAAATTTATTATACTT
IRR : TGTACAAGTCAAGATTTAAACTGACAGACAGATTACAACAGGGGATGCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TAACCTGCGCGGTGAGTAGA0
GCTTTGTGAAGt/gTGATGTTACACTCGC7
TTATGGCAGAGGTATACAGGAATTTTC7

DNA sequence

TGTACTAGTTTAGATTTAAACTGACAGGTACAATAAAATTTATTATACTTGGAGTAAACCAAAAACTAAACTAGAGAAGAAAATGAACTTAAACCAGAAA
ATCATAAAACCTAAATTGGGTTTATTAGAGTTAGCAAAAAGGTTAGGCAATGTATCCTCAGCTTGTAAGACCATGGGCTATAGCCGAGATAGCTATTATC
GCTTTAAGGAACTCTATGAGAAGGGTGGTGAAGAAGGGCTTTATGAATTAACACGTCGAAAGCCAATCCTTGCCAATCGAGTAGACCCTACTATAGAAAA
GGCAGTACTGAATATGGCTATAGAATATCCAGCCTATGGACAAGAAAGAGTGTCCAATGAGCTAAAAAAGCAAGGTATACTTGTATCTGCTGGAGGAGTA
AGATCTATATGGCTTCGCAATGATCTAAACAACCTTAAAAAGCGATTAACAGCTTTAGAAGCTAAGATGGCTCAAGATGGTATGGTTTTAACAGAAGCAC
AGCTAAAAGCTTTAGAGAATAAGAAGCAGCTTCAAGAAGCCCATGGAGAGATAGAGACGGCTCATCCAGGCTACTTAGGATGTCAGGATACTTATTATGT
GGGTAATTTTAAAGGTATAGGTAAAGTATATGGACAAACTTATATTGACTCTTACACTAGAGTAGCAGAGGCTAAGCTATATACAGAAAAAACAGCTATA
ACTTCCGCTCATATCTTAAATGAGCGGGTATTGCCTTGGTATGCTGAGCAAGGAATACCTGTTTTGCGTATTATGACCGACAGAGGCACAGAATATAAAG
GAACCTTAGAGAATCATGCTTATGAGCTGTTCTTAAGTGTAGAGGGAATAGAACATACTACTACTAAAGCCTACTCACCACAGACTAATGGCATGTGTGA
ACGTTTTCATAAAACAATGAAGACTGAGTTTTATGACACAGCTATGAGAAAAAAGATATATACCAGCTTAGAAGAATTGCAGCGTGATTTGGATGAGTGG
TTATATTACTACAACAATGAGCGAAGTCATAGTGGAAAGTATTGTTATGGGAAAACGCCTATGCAAACTTTTAAAGACAGTAAGCACTTAGCCTTGGAAA
AGAACAACGAGTTGTTGTATCTTTCTAGCACACCAGACAGGCTAGAGTATGCTGACAATTTGCATCCCCTGTTGTAATCTGTCTGTCAGTTTAAATCTTG
ACTTGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa831177+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLNQKIIKPKLGLLELAKRLGNVSSACKTMGYSRDSYYRFKELYEKGGEEGLYELTRRKPILANRVDPTIEKAVLNMAIEYPAYGQERVSNELKKQGIL
VSAGGVRSIWLRNDLNNLKKRLTALEAKMAQDGMVLTEAQLKALENKKQLQEAHGEIETAHPGYLGCQDTYYVGNFKGIGKVYGQTYIDSYTRVAEAKLY
TEKTAITSAHILNERVLPWYAEQGIPVLRIMTDRGTEYKGTLENHAYELFLSVEGIEHTTTKAYSPQTNGMCERFHKTMKTEFYDTAMRKKIYTSLEELQ
RDLDEWLYYYNNERSHSGKYCYGKTPMQTFKDSKHLALEKNNELLYLSSTPDRLEYADNLHPLL

 

Blast result :
Comments
ISCaa12 is present in three copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
ISCaa12 shares 78% amino acid identity with ISRpe1 from Rickettsia peacockii.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.