ISNpu1
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010633 | ND | Nostoc punctiforme | Nostoc punctiforme PCC 73102 plasmid pNPUN04 |
DNA section
IS Length : 1803 bp
Ends
IR Length : 43/44
IRL : GGTTCTTGGCAACTTTTGATACTGCTGGCGAAATATTGCTTAACAAATAA
IRR : GGGTCTTGGCAACTTTTGATACTGCTGGCGAAATATTGCTTAACCTACCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTACATTAT | AGAATGTGGT | 0 |
DNA sequence
GGTTCTTGGCAACTTTTGATACTGCTGGCGAAATATTGCTTAACAAATAAGTTGGCTCCATCAAGAGTTATTTAGGATCTAAAAAGCGATCGCTTGAGGT
ATGATTTGATGTCACTGAATCCACAACCGGGCTATACTGTACCAGCAGAAACGGCTAAAGTTGCCAAAGCTATTTTTACGAAGGGTAACCTCTGCATCAC
GATGGCAGATCGCCTTGACTCCTTTGTGAGCGACCAAGATTTTAGTACATTGTTTTCTCACCAGGGACAACCTGGAGTATCACCGGTACGATTAGCTCTA
GTCACAATCTTGCAGTACATTGAAGGACTCACAGATCGTCAAGCTGCTGATGCTGTGCGAAGCCGAATTGATTGGAAGTACCTCCTGTGTTTAGAGCTAA
CAGATAAAGGGTTTGACCACACTGTTTTGAGCGAATTTCGCACTCGCTTGATCGCTCAACAAGCTGAAAGTTTAGTGTTTGATCAACTCCTTAGCTGGTG
TCAACAACAAGGCTGGCTGCAAGCAAGAGGTCGCCAACGGACAGACTCCACCCATGTTGTCGCAACTATTCGGGCAGTGACACGACTGGAGTGTGCTGGA
GAAACGCTGCGGGCTGCATTGAATGCGCTGGCTGTTGTTGCACCTGCTTGGTTGCAAGCTCAAAGCCAGCCTGAATGGATAGAACGTTATAGCGAGCGCA
TGGAAGACTATCATCTACCGACTTCAAAAGCAGCGCGAGAGGAACAAGCTCATGTGTATGGCGAAGATGGAAAACAGCTGCTTGATGCAATCTTTGATGG
TCATAGTCCAGAATGGTTACAACAGGTTCCAGCAGTCGAAACACTACGACGAGTATGGGTACAGCAATACTATGTATGTAATAACGAGATTTATTGGCGA
ACAGAGCAAGGAATACCACCAGCTACATTAATGATTAGTTCACCCTATGATTTAGATGCTCATTATTCAAAAAAGAATACAACATCATGGGTAGGATACA
AAGTTCATTTGAGTGAGACTTGCGAACCTAATTCATTACATCTAATTACAAATGTTGAAACGACGGCGGCACCCATTGCTGATGGTGATGTAACTGAAGC
AATCCATACTTCACTTGCTAACAAGGATTTGCTTCCCAGTAAGCATATCGTTGATACAGGATATCTAGATGCCGAATTGTTGGTAACCGCTCAACAAGAG
CATCAAGTTCAATTGCTGGGACCGACCCGCTCAGACCTACGCTGGCAATCCAAAGCAGGTAATGGATTTGCAGCGAGCGATTTTAAAGTTGATTGGCAAC
AAGAAGTTGCCATTTGCCCCGAAGGAAAGACGAGTACATCTTGGACACCTGCAATCGATGGTCGAAACAATGAAGTAATTAAAATTAAGTTTGCACGAGC
TGACTGCGCCAATTGCCCCAGCCTGCATCTGTGTACTCGTACCAAAGAAAAGCGACGGTTGGTTACACTTCGTCCAGAAGCACAGTACAAAGCATTGCAA
GCTGCACGAAAACAAGCAATGACTGACGAGTATAAAGCAGACTATGCTCGACGGGCTGGAATTGAAGCTACTCTCTCTGAAAGCATTCGCGCTCATGGAC
TCCGCCATGCTCGATATATTGGATTAGCGAAAACTCATCTGCAACATTTGATGACAGCAACAGCAATTAACTTCAAGCGCATATTTCACTGGCTGTCCGG
TATTCCACAAGCTACCACGCGAACTTCGCAATTTGCAAAGCTTATGGCTCAGTCGGTAGGTTAAGCAATATTTCGCCAGCAGTATCAAAAGTTGCCAAGA
CCC
ATGATTTGATGTCACTGAATCCACAACCGGGCTATACTGTACCAGCAGAAACGGCTAAAGTTGCCAAAGCTATTTTTACGAAGGGTAACCTCTGCATCAC
GATGGCAGATCGCCTTGACTCCTTTGTGAGCGACCAAGATTTTAGTACATTGTTTTCTCACCAGGGACAACCTGGAGTATCACCGGTACGATTAGCTCTA
GTCACAATCTTGCAGTACATTGAAGGACTCACAGATCGTCAAGCTGCTGATGCTGTGCGAAGCCGAATTGATTGGAAGTACCTCCTGTGTTTAGAGCTAA
CAGATAAAGGGTTTGACCACACTGTTTTGAGCGAATTTCGCACTCGCTTGATCGCTCAACAAGCTGAAAGTTTAGTGTTTGATCAACTCCTTAGCTGGTG
TCAACAACAAGGCTGGCTGCAAGCAAGAGGTCGCCAACGGACAGACTCCACCCATGTTGTCGCAACTATTCGGGCAGTGACACGACTGGAGTGTGCTGGA
GAAACGCTGCGGGCTGCATTGAATGCGCTGGCTGTTGTTGCACCTGCTTGGTTGCAAGCTCAAAGCCAGCCTGAATGGATAGAACGTTATAGCGAGCGCA
TGGAAGACTATCATCTACCGACTTCAAAAGCAGCGCGAGAGGAACAAGCTCATGTGTATGGCGAAGATGGAAAACAGCTGCTTGATGCAATCTTTGATGG
TCATAGTCCAGAATGGTTACAACAGGTTCCAGCAGTCGAAACACTACGACGAGTATGGGTACAGCAATACTATGTATGTAATAACGAGATTTATTGGCGA
ACAGAGCAAGGAATACCACCAGCTACATTAATGATTAGTTCACCCTATGATTTAGATGCTCATTATTCAAAAAAGAATACAACATCATGGGTAGGATACA
AAGTTCATTTGAGTGAGACTTGCGAACCTAATTCATTACATCTAATTACAAATGTTGAAACGACGGCGGCACCCATTGCTGATGGTGATGTAACTGAAGC
AATCCATACTTCACTTGCTAACAAGGATTTGCTTCCCAGTAAGCATATCGTTGATACAGGATATCTAGATGCCGAATTGTTGGTAACCGCTCAACAAGAG
CATCAAGTTCAATTGCTGGGACCGACCCGCTCAGACCTACGCTGGCAATCCAAAGCAGGTAATGGATTTGCAGCGAGCGATTTTAAAGTTGATTGGCAAC
AAGAAGTTGCCATTTGCCCCGAAGGAAAGACGAGTACATCTTGGACACCTGCAATCGATGGTCGAAACAATGAAGTAATTAAAATTAAGTTTGCACGAGC
TGACTGCGCCAATTGCCCCAGCCTGCATCTGTGTACTCGTACCAAAGAAAAGCGACGGTTGGTTACACTTCGTCCAGAAGCACAGTACAAAGCATTGCAA
GCTGCACGAAAACAAGCAATGACTGACGAGTATAAAGCAGACTATGCTCGACGGGCTGGAATTGAAGCTACTCTCTCTGAAAGCATTCGCGCTCATGGAC
TCCGCCATGCTCGATATATTGGATTAGCGAAAACTCATCTGCAACATTTGATGACAGCAACAGCAATTAACTTCAAGCGCATATTTCACTGGCTGTCCGG
TATTCCACAAGCTACCACGCGAACTTCGCAATTTGCAAAGCTTATGGCTCAGTCGGTAGGTTAAGCAATATTTCGCCAGCAGTATCAAAAGTTGCCAAGA
CCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1656 bp | 551 aa | 109 | 1764 | + | No |
Chemistry : DDE
ORF sequence :
MSLNPQPGYTVPAETAKVAKAIFTKGNLCITMADRLDSFVSDQDFSTLFSHQGQPGVSPVRLALVTILQYIEGLTDRQAADAVRSRIDWKYLLCLELTDK
GFDHTVLSEFRTRLIAQQAESLVFDQLLSWCQQQGWLQARGRQRTDSTHVVATIRAVTRLECAGETLRAALNALAVVAPAWLQAQSQPEWIERYSERMED
YHLPTSKAAREEQAHVYGEDGKQLLDAIFDGHSPEWLQQVPAVETLRRVWVQQYYVCNNEIYWRTEQGIPPATLMISSPYDLDAHYSKKNTTSWVGYKVH
LSETCEPNSLHLITNVETTAAPIADGDVTEAIHTSLANKDLLPSKHIVDTGYLDAELLVTAQQEHQVQLLGPTRSDLRWQSKAGNGFAASDFKVDWQQEV
AICPEGKTSTSWTPAIDGRNNEVIKIKFARADCANCPSLHLCTRTKEKRRLVTLRPEAQYKALQAARKQAMTDEYKADYARRAGIEATLSESIRAHGLRH
ARYIGLAKTHLQHLMTATAINFKRIFHWLSGIPQATTRTSQFAKLMAQSVG
GFDHTVLSEFRTRLIAQQAESLVFDQLLSWCQQQGWLQARGRQRTDSTHVVATIRAVTRLECAGETLRAALNALAVVAPAWLQAQSQPEWIERYSERMED
YHLPTSKAAREEQAHVYGEDGKQLLDAIFDGHSPEWLQQVPAVETLRRVWVQQYYVCNNEIYWRTEQGIPPATLMISSPYDLDAHYSKKNTTSWVGYKVH
LSETCEPNSLHLITNVETTAAPIADGDVTEAIHTSLANKDLLPSKHIVDTGYLDAELLVTAQQEHQVQLLGPTRSDLRWQSKAGNGFAASDFKVDWQQEV
AICPEGKTSTSWTPAIDGRNNEVIKIKFARADCANCPSLHLCTRTKEKRRLVTLRPEAQYKALQAARKQAMTDEYKADYARRAGIEATLSESIRAHGLRH
ARYIGLAKTHLQHLMTATAINFKRIFHWLSGIPQATTRTSQFAKLMAQSVG
Blast result :
Comments
ISNpu1 is 65% aa similar to ISAcma45.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Meeks,J.C., Elhai,J., Campbell,E.L., Thiel,T., Longmire,J., Potts,M. and Atlas,R. (2008) Diret submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Meeks,J.C., Elhai,J., Campbell,E.L., Thiel,T., Longmire,J., Potts,M. and Atlas,R. (2008) Diret submission GenBank.