ISEcl3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY780889 ND Enterobacter cloacae
Enterobacter cloacae plasmid pT103
DNA section
IS Length : 1055 bp

Ends


IR Length : 17

IRL : GGCTTTGTTGAATAAATTGAACTTTTAGGCGCCTGGCGGATCTGATCGCT
IRR : GGCTTTGTTGAATAAATCAGAGTTAACCTACTGGATGACTCTCGCAGGTA

Insertion site


Left flankDirect repeatRight flankDR Length
GGTTCTAATTCTGTTGGGCA0

DNA sequence

GGCTTTGTTGAATAAATTGAACTTTTAGGCGCCTGGCGGATCTGATCGCTACGGTCGTTTCAACATCGGATCCCCATGGCAAAGCAAAAGTTTAAAATCA
CCAACTGGTCCACCTACAACAGTGCGCTCAGACAGCGCGGCTCGCTGACGGTCTGGCTTGATGAGTCAGCTATTGCTGCATGGACTGACAGTGCACAGCC
TGAAGGTCGTGGCCGACCGCTCCACTACACAGATATGGCGATCTCCACGGTTCTGATGATGAAGCGCGTGTTTAACCTGCCGCTCCGGGCTTTACAGGGC
TTCGTTGACTCAGTTTTTACTCTGATGGCTCTGCCGCTGCGCTGCCCGGACTACTCTCTGGTGAGCAAACGGGCAAAATGCGTCAACATCAGCATAAAGA
CGCCAACCCGGGGTGAAATCTCGCATCTGGTCATTGATGCTACCGGTCTGAAGGTCTTCGGCGAAGGTGAATGGAAAGTCAGACAGCATGGGGCTGACAA
ACGCAGGGTGTGGCGCAAGCTCCATCTGGCCGCAGACAGTGCGACGCACGAGATTATCTGTGCCGATTTATCGCTTAGCGGTACAACAGATGCGCAGGCT
CTGCCAGAGCTGATAAACCAGACCCACCGGAAAATCAGGGAAGCATCGGCAGACGGCGCTTATGACACACGCTACTGCCATGATGCGTTGCTTCGGAAAA
AAATCAGGCCACTTATCCCGCCGCGAAGCGGGGCGCAATACTGGCCGGACAAGTACCATGAACGTAACCACGCGGTGGCGAATCAGCATCTGAGCGGCGG
CAATGACGTCTGGAAAAAGAAGGTGAGCTATCACCGTCGTTCGATAGCAGAAACAGCTATGTTCCGCATCAAAAGCTTGCTGGGTGGTCATCTGAGCCTG
CGGGGCTATGACGCGCAGGTGGGTGAAGCGATGGCAATGGTCAAGGCGCTGAACCGGATGACGTTGTTGGGTATGCCGCACAGCGTCCGGATCGCATAAC
GGGTGTACCTGCGAGAGTCATCCAGTAGGTTAACTCTGATTTATTCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
924 bp307 aa76999+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKQKFKITNWSTYNSALRQRGSLTVWLDESAIAAWTDSAQPEGRGRPLHYTDMAISTVLMMKRVFNLPLRALQGFVDSVFTLMALPLRCPDYSLVSKRA
KCVNISIKTPTRGEISHLVIDATGLKVFGEGEWKVRQHGADKRRVWRKLHLAADSATHEIICADLSLSGTTDAQALPELINQTHRKIREASADGAYDTRY
CHDALLRKKIRPLIPPRSGAQYWPDKYHERNHAVANQHLSGGNDVWKKKVSYHRRSIAETAMFRIKSLLGGHLSLRGYDAQVGEAMAMVKALNRMTLLGM
PHSVRIA

 

Blast result :
Comments
ISEcl3 is 81% aa similar to IS903.
References
1] ISfinder annotation (2010)

2] Yu,Y., Du,X. and Zhou,Z.(2004) Direct submission GenBank