ISMtsp9

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010511 ND Methylobacterium sp.
Methylobacterium sp. 4-46
DNA section
IS Length : 1456 bp

Ends


Left end : CTGTACCTGACGACGAGCCGTGCTTCAGTGCGGCTTGGGCGTCCGGCGATCTGAGGTATTTCCGGTCCGACGCAGGCGTAGCTCAGCAACGCCTGTGCCG
Right end : AACCCGACGCTGGAACGCCTCTCGGGCGGGGCCAGCCATCCTGTTTCTAAGAGGTCAAACCGTCGTATCGCCTCCCAAGGCTTGACCCGCGATACAGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGGTACTTCCAGTCGATC0

DNA sequence

CTGTACCTGACGACGAGCCGTGCTTCAGTGCGGCTTGGGCGTCCGGCGATCTGAGGTATTTCCGGTCCGACGCAGGCGTAGCTCAGCAACGCCTGTGCCG
CGATCGCCGATTGGCACGATCCCGGATGCCCTGTCGCGTTCCTCCGAACAGTCGCTGGGGCTCCGCTCGCGCGGACGCCCGCGTACAGGACAGGATCCGC
CCATGCTCAGTCCCGGACTGGTGGCCGGCATCGATGCCGGCAAGCACTTCCTCGATCTCGGCTTCCATCCTGCCGGCAAGCCGATGCGCTGCGACAACAA
TCCGGCCGGCATCAAGCGCCTGATCGCGGCCTTGCGGCAACGAGGCGTCATTCGCGTCGCCCTGGAGGCGATCGGTCCTTACGCTCAGCCTCTCGTGCAT
GCCCTCGTTGCCGCCGGCTTCACGGTGGCGCTGATTGATCCGCGACGGGTCAAGGCCTTCCGCACTGCCGAGGGGCTGATCGCCAAGACCGACCGGCTGG
ACGCGGCGCTGATCGCCCGCTTTGCTCATCGCATGAGCGAGTCTCTGCGCCCGGTTCCCACGGCCGACCAGGTGACCCTCAAGGCTCTGTCGACGCGCCG
GCGCCAGCTCACCGAGCTGATCGCCATGGAGAAGACCCGGCTGGCCCAGGCCCTCGATCCGATGATCGTCGACAGCCACCGGGCCGTCCTCGAGGCCCTG
ACGCGGACTTGTGCCGAGGTTGAAGCCGAGCTCGACCGGCGCATCGCTGCCGACCCGGCCTTGGCCCGTAAGCGCATCATCCTCACCTCGATCCCGGGGA
TCGGCCGGCGCATCGCCGGCGTGCTGATCACCGATATGCCCGAGCTTGGACGGCTCGACCGCAAGGCCGCCGCGAGCCTGGCTGGCATGGCTCCTCATCC
CAGCCAGAGCGGGGCCCATCCCGGCCGCCATGCCATCGCTGGCGGCCGGCCGTGCCTGCGGACTGCCTTCTACATGGCCGGCATGGTCGCCGCACGCGCC
TGTCCCGCTTTCCGAAAACCCTATCGCGCCATGAGAGACGCCGGCAAACCGGCCAAGCTCGCCATCGTGGCCACAGGGCGACGCGTCGTGACCCTGGCGA
ATGCTCTCCTCCGCGCCAACAAAACTTTCGACCAGAGCGACCTGGTGACTTGTCAGGCGACGTCCGGGACGGCTCCCCTGGCGACAACGGGGCAACACCA
GCATGCGCTGGCGTGATCGCTGGCTTGATCGGAGGGTCGATGCCTCGCATCGACCCTCCGCCTCATGACCGTTCGCCGGCGGGGGCGGGTCAAGGCCTTG
TCGCGCAACGCGCGATGGCGCGGAGCGCCAGCCTTGACGCGCACACGACGGTGAACAACCCGACGCTGGAACGCCTCTCGGGCGGGGCCAGCCATCCTGT
TTCTAAGAGGTCAAACCGTCGTATCGCCTCCCAAGGCTTGACCCGCGATACAGTCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa2031216+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MLSPGLVAGIDAGKHFLDLGFHPAGKPMRCDNNPAGIKRLIAALRQRGVIRVALEAIGPYAQPLVHALVAAGFTVALIDPRRVKAFRTAEGLIAKTDRLD
AALIARFAHRMSESLRPVPTADQVTLKALSTRRRQLTELIAMEKTRLAQALDPMIVDSHRAVLEALTRTCAEVEAELDRRIAADPALARKRIILTSIPGI
GRRIAGVLITDMPELGRLDRKAAASLAGMAPHPSQSGAHPGRHAIAGGRPCLRTAFYMAGMVAARACPAFRKPYRAMRDAGKPAKLAIVATGRRVVTLAN
ALLRANKTFDQSDLVTCQATSGTAPLATTGQHQHALA

 

Blast result :
Comments
ISMtsp9 is 53% aa similar to ISGme8.
ISMtsp9 is inserted in another insertion sequence of the IS1182 family.
References
1] Ming-Chun Lee and David Robinson, direct submission.