ISPkr1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU826200 | Y | Paracoccus koreensis | Paracoccus koreensis JCM 21670 |
DNA section
IS Length : 2469 bp
Ends
IR Length : 26/34
IRL : TGTGAACCGGCGTGCAAAATTGACCCCGTAGCGGGGTAATCGGCGCCCAA
IRR : TGTCAATCGGCACGCAATCTTGACCCCCTATCGGCGTCCAAAAATGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTACGGCCT | GTATGTGG | TGGATGAAGC | 8 |
DNA sequence
TGTGAACCGGCGTGCAAAATTGACCCCGTAGCGGGGTAATCGGCGCCCAAAAATGACCCCCTTACACTGATGGTCATGATGCTCCCGAGGTCATCGGGGA
GCGCAGTGTGGGATGTTGGTCGTGGAGACGATAGCGAAGATCCGGCGGGCGTATTTTCAGGACAAGAAGTCGATCAAACAGATTTGCCGGGAGCTGCGGG
TATCGCGGAACACGGTGCGCAAGGTGATCCGGTCGGGTGCGACGGAGCTCACCTACGAGCGAACCATTCAGCCGCTGCCAAAGATCGGACCCTGGAAAGA
CATGCTCGACGAGATATTGGCGGCGAACTCGCGGAAGCCCAAACGCGAGCGACTGACCCGCATTCGGATCTTCGAAGAACTCCGGGCCCGAGGTTATGAT
GGCGGCTATGATGCCGTCCGGCGATACGCGGCCTCCTGGTCCAAGGAGGAAGAGGTGGCATCTGCGGCCGCCTATGTCCCACTAACCTTCGACCCAGGCG
AGGCCTACCAGTTCGACTGGAGCCACGAGATCGTGGTGATCGACGGCGCGACGACCACGGTGAAGGTGGCACATGTCCGCCTGTGTCACAGCCGGATGCT
GTTCGTGCGTGCCTATCCCCGCGAGACGCAGGAGATGGTCTTCGACGCGCATGACAAGGCCTTCGCCTTCTTCGGGGGCACCTGCACGCGGGGCATCTAC
GACAACATGAAGACCGCGGTCGACACGATCTTCGTCGGCCGAGACCGCGCCTACAACCGCCGGTTCCAGCAGATGTGCGGGCATTACCTCGTCGATCCCG
TCGCCTGCACCCCGGCATCCGGCTGGGAGAAGGGACAGGTCGAGAACCAGGTCGGTGTTGTCCGACGGCGGTTCTTCGTGCCCCGGCCGAAGTTCAGGAG
CTACGCCGAGCTCAACGCCTGGCTCGAGGACCGCTGTGTTGCCTGGGCCAAGGCCAATCCGCATCAGGAGCTTCGGAATCGAACGATCTGGGATGTGTTC
CAGGACGAGCGCGCGAGCCTTGTGCCCTACGTTGGTCCGTTCGACGGCTTCCATGCCGTGCCGGCTTCGGTCTCGAAGACCTGTCTCGTCCGGTTCGACA
AGAACCGCTACTCCGTGGATGGCCGGGCCGTTGGCCGCCCCGTCGAGATCCGTGCCTATGCCGAGCGGGTCGAGTTCTGGCAGGACGGCAAGATCGTGGG
GCAGCACGCCCGAGCCTTCGGGCGCGACAAGGCCATCTACGACCCGTTGCACTACATTCCGGTTCTGGCTCGCAAGCCCGGTGCCCTCCGGAATGGCGCG
CCCTTCAAGGACTGGGACCTGCCGCCATCGATCAGGCGCGTGCAGCGCAAGCTTGGCAAGGTGCCGAACGGCGACCGGCAGATGGTCCAGATCCTCAGCA
TGATCCCGATCGATGGGCTGGATGCGGTGGAAGCTGCCTGTGCCGAAGCCCTGAGCGAAGGGGTCCCCGCAGCCTCGGTCGTCATCAACATCCTGGCCCG
GCATCGGGAGCCGCCGCCGCCGCTGACCATCGATACGCCGGCCGCGTTGCGACTGACCTGCGAGCCCGTCGCCGATTGCAAACGCTACGACAGCCTCAGG
AGACCCAACCATGGAAAGATCACAGGTGCTGGACGCGATGAGCCAGCTGAAGCTCTACGGCATGAAGGCCGCCTACGATGAGATCATCACCACGGCGGTG
AAGCGTCAGCACGAGCCGCAACAGATCGTCGGCGACCTGCTGAATGCAGAGATCAGCGAGAAGCAGGCGCGCTCGATCAAATACCAGATGACAATCGCCA
AGCTGCCGCTGGCGAAAGAGGTCGACGAGTTCAGCTTCGAGGAAACGCCGGTCAACGAGACGCTGGTGCGCGACCTGGCTGCCGGTGAGTTCCTCGAACA
ACAGCGCAATGTCGTGCTCATCGGTGGCACCGGCACCGGCAAATCCCACCTTGCCGTAAGCATCGCACGGGCCTGCATCCGACGCGGCAAACGGGGGCGC
TTCTTCAATGTCGTGGACCTGGTGAACAAGCTCGATGCCGAAGCCCGTGCCGACCGACAGGGGCGCACGGCAGACCTGCTCTGCCGCCTCGACTTCCTGA
TACTCGACGAACTCGGCTATCTCCCCTTCGCGCAGACCGGCGGCCAGCTGCTGTTCCATCTCATCAGCCGCCTCTACGAGCGCACCTCGATCATCGTGAC
GACCAATCTCGACTTTGGGGAATGGCCTTCGGTCTTCGGCGATGCGAAGATGACCACTGCGCTGCTCGACCGCCTGACCCATCACTGCGACATCGTCGAA
ACCGGCAACGAGAGCTGGCGCTTCAAGACCCGAGAATGACCGACACTCACGCTGGCCCGATACGGCTGCGCTGTATGGGGGCTACACCGCATCGGGCCAG
CTACCCGCTCGCTCCAAAGGGGTCATTTTTGGACGCCGATAGGGGGTCAAGATTGCGTGCCGATTGACA
GCGCAGTGTGGGATGTTGGTCGTGGAGACGATAGCGAAGATCCGGCGGGCGTATTTTCAGGACAAGAAGTCGATCAAACAGATTTGCCGGGAGCTGCGGG
TATCGCGGAACACGGTGCGCAAGGTGATCCGGTCGGGTGCGACGGAGCTCACCTACGAGCGAACCATTCAGCCGCTGCCAAAGATCGGACCCTGGAAAGA
CATGCTCGACGAGATATTGGCGGCGAACTCGCGGAAGCCCAAACGCGAGCGACTGACCCGCATTCGGATCTTCGAAGAACTCCGGGCCCGAGGTTATGAT
GGCGGCTATGATGCCGTCCGGCGATACGCGGCCTCCTGGTCCAAGGAGGAAGAGGTGGCATCTGCGGCCGCCTATGTCCCACTAACCTTCGACCCAGGCG
AGGCCTACCAGTTCGACTGGAGCCACGAGATCGTGGTGATCGACGGCGCGACGACCACGGTGAAGGTGGCACATGTCCGCCTGTGTCACAGCCGGATGCT
GTTCGTGCGTGCCTATCCCCGCGAGACGCAGGAGATGGTCTTCGACGCGCATGACAAGGCCTTCGCCTTCTTCGGGGGCACCTGCACGCGGGGCATCTAC
GACAACATGAAGACCGCGGTCGACACGATCTTCGTCGGCCGAGACCGCGCCTACAACCGCCGGTTCCAGCAGATGTGCGGGCATTACCTCGTCGATCCCG
TCGCCTGCACCCCGGCATCCGGCTGGGAGAAGGGACAGGTCGAGAACCAGGTCGGTGTTGTCCGACGGCGGTTCTTCGTGCCCCGGCCGAAGTTCAGGAG
CTACGCCGAGCTCAACGCCTGGCTCGAGGACCGCTGTGTTGCCTGGGCCAAGGCCAATCCGCATCAGGAGCTTCGGAATCGAACGATCTGGGATGTGTTC
CAGGACGAGCGCGCGAGCCTTGTGCCCTACGTTGGTCCGTTCGACGGCTTCCATGCCGTGCCGGCTTCGGTCTCGAAGACCTGTCTCGTCCGGTTCGACA
AGAACCGCTACTCCGTGGATGGCCGGGCCGTTGGCCGCCCCGTCGAGATCCGTGCCTATGCCGAGCGGGTCGAGTTCTGGCAGGACGGCAAGATCGTGGG
GCAGCACGCCCGAGCCTTCGGGCGCGACAAGGCCATCTACGACCCGTTGCACTACATTCCGGTTCTGGCTCGCAAGCCCGGTGCCCTCCGGAATGGCGCG
CCCTTCAAGGACTGGGACCTGCCGCCATCGATCAGGCGCGTGCAGCGCAAGCTTGGCAAGGTGCCGAACGGCGACCGGCAGATGGTCCAGATCCTCAGCA
TGATCCCGATCGATGGGCTGGATGCGGTGGAAGCTGCCTGTGCCGAAGCCCTGAGCGAAGGGGTCCCCGCAGCCTCGGTCGTCATCAACATCCTGGCCCG
GCATCGGGAGCCGCCGCCGCCGCTGACCATCGATACGCCGGCCGCGTTGCGACTGACCTGCGAGCCCGTCGCCGATTGCAAACGCTACGACAGCCTCAGG
AGACCCAACCATGGAAAGATCACAGGTGCTGGACGCGATGAGCCAGCTGAAGCTCTACGGCATGAAGGCCGCCTACGATGAGATCATCACCACGGCGGTG
AAGCGTCAGCACGAGCCGCAACAGATCGTCGGCGACCTGCTGAATGCAGAGATCAGCGAGAAGCAGGCGCGCTCGATCAAATACCAGATGACAATCGCCA
AGCTGCCGCTGGCGAAAGAGGTCGACGAGTTCAGCTTCGAGGAAACGCCGGTCAACGAGACGCTGGTGCGCGACCTGGCTGCCGGTGAGTTCCTCGAACA
ACAGCGCAATGTCGTGCTCATCGGTGGCACCGGCACCGGCAAATCCCACCTTGCCGTAAGCATCGCACGGGCCTGCATCCGACGCGGCAAACGGGGGCGC
TTCTTCAATGTCGTGGACCTGGTGAACAAGCTCGATGCCGAAGCCCGTGCCGACCGACAGGGGCGCACGGCAGACCTGCTCTGCCGCCTCGACTTCCTGA
TACTCGACGAACTCGGCTATCTCCCCTTCGCGCAGACCGGCGGCCAGCTGCTGTTCCATCTCATCAGCCGCCTCTACGAGCGCACCTCGATCATCGTGAC
GACCAATCTCGACTTTGGGGAATGGCCTTCGGTCTTCGGCGATGCGAAGATGACCACTGCGCTGCTCGACCGCCTGACCCATCACTGCGACATCGTCGAA
ACCGGCAACGAGAGCTGGCGCTTCAAGACCCGAGAATGACCGACACTCACGCTGGCCCGATACGGCTGCGCTGTATGGGGGCTACACCGCATCGGGCCAG
CTACCCGCTCGCTCCAAAGGGGTCATTTTTGGACGCCGATAGGGGGTCAAGATTGCGTGCCGATTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1569 bp | 522 aa | 113 | 1681 | + | No |
Chemistry : DDE
ORF sequence :
MLVVETIAKIRRAYFQDKKSIKQICRELRVSRNTVRKVIRSGATELTYERTIQPLPKIGPWKDMLDEILAANSRKPKRERLTRIRIFEELRARGYDGGYD
AVRRYAASWSKEEEVASAAAYVPLTFDPGEAYQFDWSHEIVVIDGATTTVKVAHVRLCHSRMLFVRAYPRETQEMVFDAHDKAFAFFGGTCTRGIYDNMK
TAVDTIFVGRDRAYNRRFQQMCGHYLVDPVACTPASGWEKGQVENQVGVVRRRFFVPRPKFRSYAELNAWLEDRCVAWAKANPHQELRNRTIWDVFQDER
ASLVPYVGPFDGFHAVPASVSKTCLVRFDKNRYSVDGRAVGRPVEIRAYAERVEFWQDGKIVGQHARAFGRDKAIYDPLHYIPVLARKPGALRNGAPFKD
WDLPPSIRRVQRKLGKVPNGDRQMVQILSMIPIDGLDAVEAACAEALSEGVPAASVVINILARHREPPPPLTIDTPAALRLTCEPVADCKRYDSLRRPNH
GKITGAGRDEPAEALRHEGRLR
AVRRYAASWSKEEEVASAAAYVPLTFDPGEAYQFDWSHEIVVIDGATTTVKVAHVRLCHSRMLFVRAYPRETQEMVFDAHDKAFAFFGGTCTRGIYDNMK
TAVDTIFVGRDRAYNRRFQQMCGHYLVDPVACTPASGWEKGQVENQVGVVRRRFFVPRPKFRSYAELNAWLEDRCVAWAKANPHQELRNRTIWDVFQDER
ASLVPYVGPFDGFHAVPASVSKTCLVRFDKNRYSVDGRAVGRPVEIRAYAERVEFWQDGKIVGQHARAFGRDKAIYDPLHYIPVLARKPGALRNGAPFKD
WDLPPSIRRVQRKLGKVPNGDRQMVQILSMIPIDGLDAVEAACAEALSEGVPAASVVINILARHREPPPPLTIDTPAALRLTCEPVADCKRYDSLRRPNH
GKITGAGRDEPAEALRHEGRLR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
729 bp | 242 aa | 1611 | 2339 | + | No |
AG : IS21 helper
ORF sequence :
MERSQVLDAMSQLKLYGMKAAYDEIITTAVKRQHEPQQIVGDLLNAEISEKQARSIKYQMTIAKLPLAKEVDEFSFEETPVNETLVRDLAAGEFLEQQRN
VVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLLCRLDFLILDELGYLPFAQTGGQLLFHLISRLYERTSIIVTTNL
DFGEWPSVFGDAKMTTALLDRLTHHCDIVETGNESWRFKTRE
VVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLLCRLDFLILDELGYLPFAQTGGQLLFHLISRLYERTSIIVTTNL
DFGEWPSVFGDAKMTTALLDRLTHHCDIVETGNESWRFKTRE
Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277