ISPkr1

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GU826200 Y Paracoccus koreensis
Paracoccus koreensis JCM 21670
DNA section
IS Length : 2469 bp

Ends


IR Length : 26/34

IRL : TGTGAACCGGCGTGCAAAATTGACCCCGTAGCGGGGTAATCGGCGCCCAA
IRR : TGTCAATCGGCACGCAATCTTGACCCCCTATCGGCGTCCAAAAATGACCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCTACGGCCTGTATGTGGTGGATGAAGC8

DNA sequence

TGTGAACCGGCGTGCAAAATTGACCCCGTAGCGGGGTAATCGGCGCCCAAAAATGACCCCCTTACACTGATGGTCATGATGCTCCCGAGGTCATCGGGGA
GCGCAGTGTGGGATGTTGGTCGTGGAGACGATAGCGAAGATCCGGCGGGCGTATTTTCAGGACAAGAAGTCGATCAAACAGATTTGCCGGGAGCTGCGGG
TATCGCGGAACACGGTGCGCAAGGTGATCCGGTCGGGTGCGACGGAGCTCACCTACGAGCGAACCATTCAGCCGCTGCCAAAGATCGGACCCTGGAAAGA
CATGCTCGACGAGATATTGGCGGCGAACTCGCGGAAGCCCAAACGCGAGCGACTGACCCGCATTCGGATCTTCGAAGAACTCCGGGCCCGAGGTTATGAT
GGCGGCTATGATGCCGTCCGGCGATACGCGGCCTCCTGGTCCAAGGAGGAAGAGGTGGCATCTGCGGCCGCCTATGTCCCACTAACCTTCGACCCAGGCG
AGGCCTACCAGTTCGACTGGAGCCACGAGATCGTGGTGATCGACGGCGCGACGACCACGGTGAAGGTGGCACATGTCCGCCTGTGTCACAGCCGGATGCT
GTTCGTGCGTGCCTATCCCCGCGAGACGCAGGAGATGGTCTTCGACGCGCATGACAAGGCCTTCGCCTTCTTCGGGGGCACCTGCACGCGGGGCATCTAC
GACAACATGAAGACCGCGGTCGACACGATCTTCGTCGGCCGAGACCGCGCCTACAACCGCCGGTTCCAGCAGATGTGCGGGCATTACCTCGTCGATCCCG
TCGCCTGCACCCCGGCATCCGGCTGGGAGAAGGGACAGGTCGAGAACCAGGTCGGTGTTGTCCGACGGCGGTTCTTCGTGCCCCGGCCGAAGTTCAGGAG
CTACGCCGAGCTCAACGCCTGGCTCGAGGACCGCTGTGTTGCCTGGGCCAAGGCCAATCCGCATCAGGAGCTTCGGAATCGAACGATCTGGGATGTGTTC
CAGGACGAGCGCGCGAGCCTTGTGCCCTACGTTGGTCCGTTCGACGGCTTCCATGCCGTGCCGGCTTCGGTCTCGAAGACCTGTCTCGTCCGGTTCGACA
AGAACCGCTACTCCGTGGATGGCCGGGCCGTTGGCCGCCCCGTCGAGATCCGTGCCTATGCCGAGCGGGTCGAGTTCTGGCAGGACGGCAAGATCGTGGG
GCAGCACGCCCGAGCCTTCGGGCGCGACAAGGCCATCTACGACCCGTTGCACTACATTCCGGTTCTGGCTCGCAAGCCCGGTGCCCTCCGGAATGGCGCG
CCCTTCAAGGACTGGGACCTGCCGCCATCGATCAGGCGCGTGCAGCGCAAGCTTGGCAAGGTGCCGAACGGCGACCGGCAGATGGTCCAGATCCTCAGCA
TGATCCCGATCGATGGGCTGGATGCGGTGGAAGCTGCCTGTGCCGAAGCCCTGAGCGAAGGGGTCCCCGCAGCCTCGGTCGTCATCAACATCCTGGCCCG
GCATCGGGAGCCGCCGCCGCCGCTGACCATCGATACGCCGGCCGCGTTGCGACTGACCTGCGAGCCCGTCGCCGATTGCAAACGCTACGACAGCCTCAGG
AGACCCAACCATGGAAAGATCACAGGTGCTGGACGCGATGAGCCAGCTGAAGCTCTACGGCATGAAGGCCGCCTACGATGAGATCATCACCACGGCGGTG
AAGCGTCAGCACGAGCCGCAACAGATCGTCGGCGACCTGCTGAATGCAGAGATCAGCGAGAAGCAGGCGCGCTCGATCAAATACCAGATGACAATCGCCA
AGCTGCCGCTGGCGAAAGAGGTCGACGAGTTCAGCTTCGAGGAAACGCCGGTCAACGAGACGCTGGTGCGCGACCTGGCTGCCGGTGAGTTCCTCGAACA
ACAGCGCAATGTCGTGCTCATCGGTGGCACCGGCACCGGCAAATCCCACCTTGCCGTAAGCATCGCACGGGCCTGCATCCGACGCGGCAAACGGGGGCGC
TTCTTCAATGTCGTGGACCTGGTGAACAAGCTCGATGCCGAAGCCCGTGCCGACCGACAGGGGCGCACGGCAGACCTGCTCTGCCGCCTCGACTTCCTGA
TACTCGACGAACTCGGCTATCTCCCCTTCGCGCAGACCGGCGGCCAGCTGCTGTTCCATCTCATCAGCCGCCTCTACGAGCGCACCTCGATCATCGTGAC
GACCAATCTCGACTTTGGGGAATGGCCTTCGGTCTTCGGCGATGCGAAGATGACCACTGCGCTGCTCGACCGCCTGACCCATCACTGCGACATCGTCGAA
ACCGGCAACGAGAGCTGGCGCTTCAAGACCCGAGAATGACCGACACTCACGCTGGCCCGATACGGCTGCGCTGTATGGGGGCTACACCGCATCGGGCCAG
CTACCCGCTCGCTCCAAAGGGGTCATTTTTGGACGCCGATAGGGGGTCAAGATTGCGTGCCGATTGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1569 bp522 aa1131681+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVVETIAKIRRAYFQDKKSIKQICRELRVSRNTVRKVIRSGATELTYERTIQPLPKIGPWKDMLDEILAANSRKPKRERLTRIRIFEELRARGYDGGYD
AVRRYAASWSKEEEVASAAAYVPLTFDPGEAYQFDWSHEIVVIDGATTTVKVAHVRLCHSRMLFVRAYPRETQEMVFDAHDKAFAFFGGTCTRGIYDNMK
TAVDTIFVGRDRAYNRRFQQMCGHYLVDPVACTPASGWEKGQVENQVGVVRRRFFVPRPKFRSYAELNAWLEDRCVAWAKANPHQELRNRTIWDVFQDER
ASLVPYVGPFDGFHAVPASVSKTCLVRFDKNRYSVDGRAVGRPVEIRAYAERVEFWQDGKIVGQHARAFGRDKAIYDPLHYIPVLARKPGALRNGAPFKD
WDLPPSIRRVQRKLGKVPNGDRQMVQILSMIPIDGLDAVEAACAEALSEGVPAASVVINILARHREPPPPLTIDTPAALRLTCEPVADCKRYDSLRRPNH
GKITGAGRDEPAEALRHEGRLR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
729 bp242 aa16112339+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MERSQVLDAMSQLKLYGMKAAYDEIITTAVKRQHEPQQIVGDLLNAEISEKQARSIKYQMTIAKLPLAKEVDEFSFEETPVNETLVRDLAAGEFLEQQRN
VVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLLCRLDFLILDELGYLPFAQTGGQLLFHLISRLYERTSIIVTTNL
DFGEWPSVFGDAKMTTALLDRLTHHCDIVETGNESWRFKTRE

 

Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277