ISPpa8

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU909902 ND Paracoccus pantotrophus
Paracoccus pantotrophus DSM 65
DNA section
IS Length : 1050 bp

Ends


IR Length : 16/17

IRL : GGCTCTGTTGCACAAATCCTGTGAGGGATTCATCTTGTGAATCCAGTATG
IRR : GACTCTGTTGCACAAATTGACTGACGGTCAGAGTTCCCCTTTCCCCCGAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTCTGTTGCACAAATCCTGTGAGGGATTCATCTTGTGAATCCAGTATGGTAGCTGGAGGGCATGAGCAGACCCACACCCCCCGCATACAAGACCAGGA
ACTGGCCCACATATAACGAAGCGCTCAAGCGCCGCGGCTCGCTGACGATCTGGTTTGATCCCTCCATGATCTGGGAGGCTGCGCCGACCGGCAAACGGGG
GCGACAGCCCGACTACAGTGACGCAGCCATCCAAACCTGCCTGACGATGAAGGTGTTGTTCGGGATGGCGCTGCGGCAGACGACTGGGTTCGTCGAGAGC
TTGCTTCGACTGATCGACCTGAACTGGGCTGTGCCGAACTTCAGCACCCTCAGCCGCCGCCAGAAGACCCTGAAGGTCAACATCCCGTTTCGCGGATCAC
AAGGGCCGCTGCACCTCTTGATCGACAGCACCGGGATCAAGGTCGAGGGCGAAGGGGAGTGGAACGCGCGCAAGCACGGCGGCACCAAACGCCGCGTCTG
GCGCAAGATCCACATCGGAATTGACGAGCAAACGCTGGAAATTAGGGCGGCGGAGTTCACGACCAGCGATGTGGGCGATGCGCCCATGCTGCCCGAATTG
CTCGACCAGATTCCGCCTGATCAAGAGATCGCCAGCGTCACCGCTGATGGCGCCTTCGACACGCGCAAATGCCATGACGCCATCGCCGCCCGGGGTGCCG
CTGCAATCATTCCACCCCGCAAAAACGCCAAGCCATGGAAGCCCGACTCTGCCGGAGCAATCGCACGGAACGAAGCCCTGCGCGCATCGAAGCGCTTCGG
TAGGACGATCTGGCGACGATGGAGCGGCTATCACCGCCGAAGCCGCGTCGAAACGAAGATGCACTGTGTGAAACTGCTGGGTCAGCGCCTCATGGCGCGG
GACTTCGACCGCCAGGTCGCGGAGTTCCAGATCCGTGTCGCCGTCCTGAACGGCTTCACCGCACTCGGCATACCCGAAACTCAAGCCGTGGGATGACTCC
GTCGGGGGAAAGGGGAACTCTGACCGTCAGTCAATTTGTGCAACAGAGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPTPPAYKTRNWPTYNEALKRRGSLTIWFDPSMIWEAAPTGKRGRQPDYSDAAIQTCLTMKVLFGMALRQTTGFVESLLRLIDLNWAVPNFSTLSRRQ
KTLKVNIPFRGSQGPLHLLIDSTGIKVEGEGEWNARKHGGTKRRVWRKIHIGIDEQTLEIRAAEFTTSDVGDAPMLPELLDQIPPDQEIASVTADGAFDT
RKCHDAIAARGAAAIIPPRKNAKPWKPDSAGAIARNEALRASKRFGRTIWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAEFQIRVAVLNGFTA
LGIPETQAVG

 

Blast result :
Comments
ISPpa8 is 94% aa similar to ISSpo9.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277