ISPpa8
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU909902 | ND | Paracoccus pantotrophus | Paracoccus pantotrophus DSM 65 |
DNA section
IS Length : 1050 bp
Ends
IR Length : 16/17
IRL : GGCTCTGTTGCACAAATCCTGTGAGGGATTCATCTTGTGAATCCAGTATG
IRR : GACTCTGTTGCACAAATTGACTGACGGTCAGAGTTCCCCTTTCCCCCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTGTTGCACAAATCCTGTGAGGGATTCATCTTGTGAATCCAGTATGGTAGCTGGAGGGCATGAGCAGACCCACACCCCCCGCATACAAGACCAGGA
ACTGGCCCACATATAACGAAGCGCTCAAGCGCCGCGGCTCGCTGACGATCTGGTTTGATCCCTCCATGATCTGGGAGGCTGCGCCGACCGGCAAACGGGG
GCGACAGCCCGACTACAGTGACGCAGCCATCCAAACCTGCCTGACGATGAAGGTGTTGTTCGGGATGGCGCTGCGGCAGACGACTGGGTTCGTCGAGAGC
TTGCTTCGACTGATCGACCTGAACTGGGCTGTGCCGAACTTCAGCACCCTCAGCCGCCGCCAGAAGACCCTGAAGGTCAACATCCCGTTTCGCGGATCAC
AAGGGCCGCTGCACCTCTTGATCGACAGCACCGGGATCAAGGTCGAGGGCGAAGGGGAGTGGAACGCGCGCAAGCACGGCGGCACCAAACGCCGCGTCTG
GCGCAAGATCCACATCGGAATTGACGAGCAAACGCTGGAAATTAGGGCGGCGGAGTTCACGACCAGCGATGTGGGCGATGCGCCCATGCTGCCCGAATTG
CTCGACCAGATTCCGCCTGATCAAGAGATCGCCAGCGTCACCGCTGATGGCGCCTTCGACACGCGCAAATGCCATGACGCCATCGCCGCCCGGGGTGCCG
CTGCAATCATTCCACCCCGCAAAAACGCCAAGCCATGGAAGCCCGACTCTGCCGGAGCAATCGCACGGAACGAAGCCCTGCGCGCATCGAAGCGCTTCGG
TAGGACGATCTGGCGACGATGGAGCGGCTATCACCGCCGAAGCCGCGTCGAAACGAAGATGCACTGTGTGAAACTGCTGGGTCAGCGCCTCATGGCGCGG
GACTTCGACCGCCAGGTCGCGGAGTTCCAGATCCGTGTCGCCGTCCTGAACGGCTTCACCGCACTCGGCATACCCGAAACTCAAGCCGTGGGATGACTCC
GTCGGGGGAAAGGGGAACTCTGACCGTCAGTCAATTTGTGCAACAGAGTC
ACTGGCCCACATATAACGAAGCGCTCAAGCGCCGCGGCTCGCTGACGATCTGGTTTGATCCCTCCATGATCTGGGAGGCTGCGCCGACCGGCAAACGGGG
GCGACAGCCCGACTACAGTGACGCAGCCATCCAAACCTGCCTGACGATGAAGGTGTTGTTCGGGATGGCGCTGCGGCAGACGACTGGGTTCGTCGAGAGC
TTGCTTCGACTGATCGACCTGAACTGGGCTGTGCCGAACTTCAGCACCCTCAGCCGCCGCCAGAAGACCCTGAAGGTCAACATCCCGTTTCGCGGATCAC
AAGGGCCGCTGCACCTCTTGATCGACAGCACCGGGATCAAGGTCGAGGGCGAAGGGGAGTGGAACGCGCGCAAGCACGGCGGCACCAAACGCCGCGTCTG
GCGCAAGATCCACATCGGAATTGACGAGCAAACGCTGGAAATTAGGGCGGCGGAGTTCACGACCAGCGATGTGGGCGATGCGCCCATGCTGCCCGAATTG
CTCGACCAGATTCCGCCTGATCAAGAGATCGCCAGCGTCACCGCTGATGGCGCCTTCGACACGCGCAAATGCCATGACGCCATCGCCGCCCGGGGTGCCG
CTGCAATCATTCCACCCCGCAAAAACGCCAAGCCATGGAAGCCCGACTCTGCCGGAGCAATCGCACGGAACGAAGCCCTGCGCGCATCGAAGCGCTTCGG
TAGGACGATCTGGCGACGATGGAGCGGCTATCACCGCCGAAGCCGCGTCGAAACGAAGATGCACTGTGTGAAACTGCTGGGTCAGCGCCTCATGGCGCGG
GACTTCGACCGCCAGGTCGCGGAGTTCCAGATCCGTGTCGCCGTCCTGAACGGCTTCACCGCACTCGGCATACCCGAAACTCAAGCCGTGGGATGACTCC
GTCGGGGGAAAGGGGAACTCTGACCGTCAGTCAATTTGTGCAACAGAGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MSRPTPPAYKTRNWPTYNEALKRRGSLTIWFDPSMIWEAAPTGKRGRQPDYSDAAIQTCLTMKVLFGMALRQTTGFVESLLRLIDLNWAVPNFSTLSRRQ
KTLKVNIPFRGSQGPLHLLIDSTGIKVEGEGEWNARKHGGTKRRVWRKIHIGIDEQTLEIRAAEFTTSDVGDAPMLPELLDQIPPDQEIASVTADGAFDT
RKCHDAIAARGAAAIIPPRKNAKPWKPDSAGAIARNEALRASKRFGRTIWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAEFQIRVAVLNGFTA
LGIPETQAVG
KTLKVNIPFRGSQGPLHLLIDSTGIKVEGEGEWNARKHGGTKRRVWRKIHIGIDEQTLEIRAAEFTTSDVGDAPMLPELLDQIPPDQEIASVTADGAFDT
RKCHDAIAARGAAAIIPPRKNAKPWKPDSAGAIARNEALRASKRFGRTIWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAEFQIRVAVLNGFTA
LGIPETQAVG
Blast result :
Comments
ISPpa8 is 94% aa similar to ISSpo9.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277