ISPlc1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GQ864160 ND Paracoccus alcaliphilus
Paracoccus alcaliphilus JCM 7364
DNA section
IS Length : 1050 bp

Ends


IR Length : 23/27

IRL : GGCTCTGTTGCACAAATCCCGTGAGGGATTCATCTTGTGAATCCAGTGTG
IRR : GACTCTGTTGCACAAATCGGGTGATGGCCGAGGTTCCCCCTTCCCCGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TCATCTGTTACTGTGTTAGATGCAATCAG9

DNA sequence

GGCTCTGTTGCACAAATCCCGTGAGGGATTCATCTTGTGAATCCAGTGTGGTAGCTGTGATTCATGAGCAGACCCAAGCCCCCGACCTACAAGACCAGGA
ACTGGCCAGCCTATAACGAAGCGCTCAAGCGCCGCGGCTCGCTGACGATCTGGTTTGACCCCGAGATGAGTTGGGATGCCGCGCCGTCAGGCAGGCGTGG
CCGCCAGCAGAGCTACAGCGATGCCGCGATCCAGACGTGCCTGTCGATGAAGGTGTTGTTCGGCATGGCCTTGCGGCAGACGACCGGGTTCGTCGAGAGC
TTGCTGCAGCTGGTCGGCCTGAACTGGGCAGTGCCGGATTTCAGCACGCTGTCCCGCCGTCAGAAGACCCTCGCCGTGAACATCCCGTATCGTGGTTCCA
AAGGGCCGTTGCACCTGCTGATAGACAGCACCGGCATCAAGGTCGAGGGCGAAGGCGAGTGGCATGCGCGCAAGCACGGTGGCCCGAAGCGGCGTGTCTG
GCGCAAGATTCATCTCGGGATCGACGAGCAAACGCTGGAGGTCAGGGCTGTCGAGGTCACCGGGAGCCACATCGGTGATGCGCCCGTTCTGCCCGATCTT
CTCAGTCAAATCCCGGAGGACCAGGAGATCGGCAGCGTCACCGCCGACGGCGCTTACGACACGCGCAAATGCCACGATGCGATCGCCGACCGCAGCGCTC
ATGCCGTCATCCCGCCCCGCAAGAACGCGAAGCCCTGGAAAGCTATCACAGCCGGAGCCATGGCCCGAAACGAAGCCCTTCGCGCCGCGAAATATCTGGG
GCGCACCCTCTGGCGACGATGGAGCGGATATCACCGCCGAAGCCGCATCGAAACAAAGATGCATTGTGTGAAACTGCTGGGCCAGCGCCTCATGGCGCGG
GACTTCGACCGCCAGGTCGCCGAACTCCAGGTCCGTATCGCTGTCCTGAACGGTTACACCGCGCTCGGCATACCCGTCACGGAAGCTGTGGGATAAGTCC
GTCCGGGGAAGGGGGAACCTCGGCCATCACCCGATTTGTGCAACAGAGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPKPPTYKTRNWPAYNEALKRRGSLTIWFDPEMSWDAAPSGRRGRQQSYSDAAIQTCLSMKVLFGMALRQTTGFVESLLQLVGLNWAVPDFSTLSRRQ
KTLAVNIPYRGSKGPLHLLIDSTGIKVEGEGEWHARKHGGPKRRVWRKIHLGIDEQTLEVRAVEVTGSHIGDAPVLPDLLSQIPEDQEIGSVTADGAYDT
RKCHDAIADRSAHAVIPPRKNAKPWKAITAGAMARNEALRAAKYLGRTLWRRWSGYHRRSRIETKMHCVKLLGQRLMARDFDRQVAELQVRIAVLNGYTA
LGIPVTEAVG

 

Blast result :
Comments
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277