ISBmu30

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010805 ND Burkholderia multivorans
Burkholderia multivorans ATCC 17616 chromosome 2
DNA section
IS Length : 2344 bp

Ends


IR Length : 10/14

IRL : GTAAGTCTTGAACTTGAATGTGGGCAACAGGATACGGCGCTGCTCAGGGC
IRR : GTACGTCGGGATCTCCCGAGGGGTGGTCAAACGTAAGCGCGAGCTTTAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGTTGCCCAa/cCGGGCGGTCCACGT8

DNA sequence

GTAAGTCTTGAACTTGAATGTGGGCAACAGGATACGGCGCTGCTCAGGGCGATGATCGACGCGTTGAGGAGTCGCTGATGCTGAGCTTCGCCGATGACCT
GAGGGTCTACCTATACCGCGAGCCGATCGACTTCCGTTGTGGCATCAATACCCTTGCCGCCCTGGTTGAGGACTCGATGCGGCTGGACCCGCTCGCACGT
GCCGTGTATGCGTTCCACAACCGCAAATGCGATCGCATCAAGCTTCTGCTGTACGAGCGCACTGGTTTCTGGCTGCTGCTGCGTCGGCTCGAGCAAGACC
GTTTCGTGTGGCCGCGACGGCATCAGGAGGTGATCGAACTGACAACGCAGCAGCTTCACTGGCTGCTCGACGGCATTGACATCGACGCGCTCCGCCGTCA
TCCCGTGCGCCATTACCAGCACGCCAGCTAGCCTGATGCGTTGCACGTAAACAACGGCAGGCGCGCCATTTACGAATTGACGTAAACCCATGGCGCGCCG
CGCCTCGCTATCCTGGAGTGCATGAACAATGCACCCGACCTCAAGCGCGTACCCCGGGCCGTCCAGGGCTATATCCACGCTCTCGAAGCGCGTGTAGCCG
GCGACGCGAAACATATCGACGAACTGAACCTGCGCGTCGAGCAACTCGAGGAACAGGTCCGCCTGCTGCAGGCCGAGCGTTTTGCACCGAAAAGCGAAAA
ACGCAAGGATCGCGTGTTCGACGAAGCCGAGCAGATTGCACGGACCGAACCCTGCGACGAGGACGATGAAGGTGTCCAGCCTGCGCTGCCCGACACCGGA
TTGCCACCGGCCAGCCAGCCTGAACGACGCAAGGCCGGACGCAAGCCGTTGCCGGCGTACCTGAGGCGCGAGCCAGTCGAATACGACCTGCCGGAGGACC
AGCGAGGCTGCCCCTGTTGCGGCAATCCGATGCATCGCATCGGCGAGGACGTCAGCGAACAGTTGCACGTCGAGGTCAAGTGGACAGTCCGTAAAAACGT
GCGTTCCAAGTGGGCCTGCCGGCACTGCGAGCGGCACGCCGAACGTACCCCGGTCGTGCTTGCACCGATGCCGGTTCAGCCGATCCCGGGCAGTCATGCG
GACGCATCTGTGATCGCGACGGTCGCGACAGCGAAGTACGTCGACGGCATGCCGTTGTACCGGATGCAGGAGGCGCTCGCACGCTGGCAAATCCCGGTGA
GTCGCGGCACGCTTGCACACTGGGTCATCCGCCCCAGCGGACTGCACTACAGTCGCTTGTACGATGCGCTGCGTAAAACGTTGCTGTCGCAGCCGTTGAT
TCACGGCGATGAAACGACGGTTCAGGTACTCAAGGAACCTGGCAGGTCCGCGCAGAGCAAGAGTTACATGTGGTGCTACCGCAGCGCCCAGGACTGCGCC
GAGCCCGGCGTGCTGTTCGAGTACCAGCCGGGGCGTGGCCAGGAGCATCCGAAGAAGTTTCTCGGCGACTACAGCGGCATGCTGATGAGCGACGGCTACA
GCGCCTGGCGCACGCTCAAAAAGGCAACGCACTTCGGATGCATGGCGCACGCGCGAAGGCTGTTCGTCAAGGCGGACAAGGCGGCCACAAAGAGGACGGA
CTCTTGCAAGCAGAAGACGCCGAACGCTCGCGTAGCGAAGGCGCTCGAGTACTTCCAGGCCCTGTACCGTGTCGAGGCGCTGGCCAAAGACGATTTGCCT
GCTGGGCTCACGCGAGCCGACTATACGTACGACCTGCGGCAAAAACATAGTGCGCCGCTGCTTGAGGCCTTCAAGGCGTGGCTCGATGAACTGGCACCGA
AGGTGGCGCCCCAGAGCCTGCTCGGCAAGGCGATCGCCTACACGCGCAACCAGTGGGAATATCTCAGCCGCTACGTCACAGATGGTTGCGCCCCCATCGA
TAACAATGTGATCGAGCGCGACGTCAGGCCGTTTGCCACTTCGAGGAAAAGCTGGCTGTTCAGCGACACGGTGGATGGCGCGAAGGCGAGTGCCACTGTA
TATAGCCTGGTACTGACATGCCGGGCTTGCGGCGTCGAGCCGTACGACTACCTGCTGCACGTACTAACGGAGTTGCCGCAGCGTGCGCCCGATGCAGACG
TGACCGACCTGCTGCCGTTCAATTATGCGCGGCAACAGCAGACCAAGGCACAGACCGGCTGACGTACCGGCCGCGCGTCGGTAGCATGACTGCGCGCCTT
CCATCCCCCCGATGCAGACATCGCCGGTTGATCTCTACCGCCCGCGGTGCAGCTACGTTCGGCCGTCACTTGCAAATGATTCTCCATTCGGTGTGCTAAA
GCTCGCGCTTACGTTTGACCACCCCTCGGGAGATCCCGACGTAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
354 bp117 aa78431+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MLSFADDLRVYLYREPIDFRCGINTLAALVEDSMRLDPLARAVYAFHNRKCDRIKLLLYERTGFWLLLRRLEQDRFVWPRRHQEVIELTTQQLHWLLDGI
DIDALRRHPVRHYQHAS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1641 bp546 aa5222162+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNNAPDLKRVPRAVQGYIHALEARVAGDAKHIDELNLRVEQLEEQVRLLQAERFAPKSEKRKDRVFDEAEQIARTEPCDEDDEGVQPALPDTGLPPASQP
ERRKAGRKPLPAYLRREPVEYDLPEDQRGCPCCGNPMHRIGEDVSEQLHVEVKWTVRKNVRSKWACRHCERHAERTPVVLAPMPVQPIPGSHADASVIAT
VATAKYVDGMPLYRMQEALARWQIPVSRGTLAHWVIRPSGLHYSRLYDALRKTLLSQPLIHGDETTVQVLKEPGRSAQSKSYMWCYRSAQDCAEPGVLFE
YQPGRGQEHPKKFLGDYSGMLMSDGYSAWRTLKKATHFGCMAHARRLFVKADKAATKRTDSCKQKTPNARVAKALEYFQALYRVEALAKDDLPAGLTRAD
YTYDLRQKHSAPLLEAFKAWLDELAPKVAPQSLLGKAIAYTRNQWEYLSRYVTDGCAPIDNNVIERDVRPFATSRKSWLFSDTVDGAKASATVYSLVLTC
RACGVEPYDYLLHVLTELPQRAPDADVTDLLPFNYARQQQTKAQTG

 

Blast result :
Comments
ISBmu30 orfA is 79% aa similar to IS1313, and ISBmu30 orfB (the Transposase) is 71% aa similar to IS692.
References
1] Ohtsubo,Y., Yuji,N. and Tsuda,M. (2007) Direct submission GenBank.