ISBmu30
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010805 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 chromosome 2 |
DNA section
IS Length : 2344 bp
Ends
IR Length : 10/14
IRL : GTAAGTCTTGAACTTGAATGTGGGCAACAGGATACGGCGCTGCTCAGGGC
IRR : GTACGTCGGGATCTCCCGAGGGGTGGTCAAACGTAAGCGCGAGCTTTAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAGTTGCCC | Aa/cCGGG | CGGTCCACGT | 8 |
DNA sequence
GTAAGTCTTGAACTTGAATGTGGGCAACAGGATACGGCGCTGCTCAGGGCGATGATCGACGCGTTGAGGAGTCGCTGATGCTGAGCTTCGCCGATGACCT
GAGGGTCTACCTATACCGCGAGCCGATCGACTTCCGTTGTGGCATCAATACCCTTGCCGCCCTGGTTGAGGACTCGATGCGGCTGGACCCGCTCGCACGT
GCCGTGTATGCGTTCCACAACCGCAAATGCGATCGCATCAAGCTTCTGCTGTACGAGCGCACTGGTTTCTGGCTGCTGCTGCGTCGGCTCGAGCAAGACC
GTTTCGTGTGGCCGCGACGGCATCAGGAGGTGATCGAACTGACAACGCAGCAGCTTCACTGGCTGCTCGACGGCATTGACATCGACGCGCTCCGCCGTCA
TCCCGTGCGCCATTACCAGCACGCCAGCTAGCCTGATGCGTTGCACGTAAACAACGGCAGGCGCGCCATTTACGAATTGACGTAAACCCATGGCGCGCCG
CGCCTCGCTATCCTGGAGTGCATGAACAATGCACCCGACCTCAAGCGCGTACCCCGGGCCGTCCAGGGCTATATCCACGCTCTCGAAGCGCGTGTAGCCG
GCGACGCGAAACATATCGACGAACTGAACCTGCGCGTCGAGCAACTCGAGGAACAGGTCCGCCTGCTGCAGGCCGAGCGTTTTGCACCGAAAAGCGAAAA
ACGCAAGGATCGCGTGTTCGACGAAGCCGAGCAGATTGCACGGACCGAACCCTGCGACGAGGACGATGAAGGTGTCCAGCCTGCGCTGCCCGACACCGGA
TTGCCACCGGCCAGCCAGCCTGAACGACGCAAGGCCGGACGCAAGCCGTTGCCGGCGTACCTGAGGCGCGAGCCAGTCGAATACGACCTGCCGGAGGACC
AGCGAGGCTGCCCCTGTTGCGGCAATCCGATGCATCGCATCGGCGAGGACGTCAGCGAACAGTTGCACGTCGAGGTCAAGTGGACAGTCCGTAAAAACGT
GCGTTCCAAGTGGGCCTGCCGGCACTGCGAGCGGCACGCCGAACGTACCCCGGTCGTGCTTGCACCGATGCCGGTTCAGCCGATCCCGGGCAGTCATGCG
GACGCATCTGTGATCGCGACGGTCGCGACAGCGAAGTACGTCGACGGCATGCCGTTGTACCGGATGCAGGAGGCGCTCGCACGCTGGCAAATCCCGGTGA
GTCGCGGCACGCTTGCACACTGGGTCATCCGCCCCAGCGGACTGCACTACAGTCGCTTGTACGATGCGCTGCGTAAAACGTTGCTGTCGCAGCCGTTGAT
TCACGGCGATGAAACGACGGTTCAGGTACTCAAGGAACCTGGCAGGTCCGCGCAGAGCAAGAGTTACATGTGGTGCTACCGCAGCGCCCAGGACTGCGCC
GAGCCCGGCGTGCTGTTCGAGTACCAGCCGGGGCGTGGCCAGGAGCATCCGAAGAAGTTTCTCGGCGACTACAGCGGCATGCTGATGAGCGACGGCTACA
GCGCCTGGCGCACGCTCAAAAAGGCAACGCACTTCGGATGCATGGCGCACGCGCGAAGGCTGTTCGTCAAGGCGGACAAGGCGGCCACAAAGAGGACGGA
CTCTTGCAAGCAGAAGACGCCGAACGCTCGCGTAGCGAAGGCGCTCGAGTACTTCCAGGCCCTGTACCGTGTCGAGGCGCTGGCCAAAGACGATTTGCCT
GCTGGGCTCACGCGAGCCGACTATACGTACGACCTGCGGCAAAAACATAGTGCGCCGCTGCTTGAGGCCTTCAAGGCGTGGCTCGATGAACTGGCACCGA
AGGTGGCGCCCCAGAGCCTGCTCGGCAAGGCGATCGCCTACACGCGCAACCAGTGGGAATATCTCAGCCGCTACGTCACAGATGGTTGCGCCCCCATCGA
TAACAATGTGATCGAGCGCGACGTCAGGCCGTTTGCCACTTCGAGGAAAAGCTGGCTGTTCAGCGACACGGTGGATGGCGCGAAGGCGAGTGCCACTGTA
TATAGCCTGGTACTGACATGCCGGGCTTGCGGCGTCGAGCCGTACGACTACCTGCTGCACGTACTAACGGAGTTGCCGCAGCGTGCGCCCGATGCAGACG
TGACCGACCTGCTGCCGTTCAATTATGCGCGGCAACAGCAGACCAAGGCACAGACCGGCTGACGTACCGGCCGCGCGTCGGTAGCATGACTGCGCGCCTT
CCATCCCCCCGATGCAGACATCGCCGGTTGATCTCTACCGCCCGCGGTGCAGCTACGTTCGGCCGTCACTTGCAAATGATTCTCCATTCGGTGTGCTAAA
GCTCGCGCTTACGTTTGACCACCCCTCGGGAGATCCCGACGTAC
GAGGGTCTACCTATACCGCGAGCCGATCGACTTCCGTTGTGGCATCAATACCCTTGCCGCCCTGGTTGAGGACTCGATGCGGCTGGACCCGCTCGCACGT
GCCGTGTATGCGTTCCACAACCGCAAATGCGATCGCATCAAGCTTCTGCTGTACGAGCGCACTGGTTTCTGGCTGCTGCTGCGTCGGCTCGAGCAAGACC
GTTTCGTGTGGCCGCGACGGCATCAGGAGGTGATCGAACTGACAACGCAGCAGCTTCACTGGCTGCTCGACGGCATTGACATCGACGCGCTCCGCCGTCA
TCCCGTGCGCCATTACCAGCACGCCAGCTAGCCTGATGCGTTGCACGTAAACAACGGCAGGCGCGCCATTTACGAATTGACGTAAACCCATGGCGCGCCG
CGCCTCGCTATCCTGGAGTGCATGAACAATGCACCCGACCTCAAGCGCGTACCCCGGGCCGTCCAGGGCTATATCCACGCTCTCGAAGCGCGTGTAGCCG
GCGACGCGAAACATATCGACGAACTGAACCTGCGCGTCGAGCAACTCGAGGAACAGGTCCGCCTGCTGCAGGCCGAGCGTTTTGCACCGAAAAGCGAAAA
ACGCAAGGATCGCGTGTTCGACGAAGCCGAGCAGATTGCACGGACCGAACCCTGCGACGAGGACGATGAAGGTGTCCAGCCTGCGCTGCCCGACACCGGA
TTGCCACCGGCCAGCCAGCCTGAACGACGCAAGGCCGGACGCAAGCCGTTGCCGGCGTACCTGAGGCGCGAGCCAGTCGAATACGACCTGCCGGAGGACC
AGCGAGGCTGCCCCTGTTGCGGCAATCCGATGCATCGCATCGGCGAGGACGTCAGCGAACAGTTGCACGTCGAGGTCAAGTGGACAGTCCGTAAAAACGT
GCGTTCCAAGTGGGCCTGCCGGCACTGCGAGCGGCACGCCGAACGTACCCCGGTCGTGCTTGCACCGATGCCGGTTCAGCCGATCCCGGGCAGTCATGCG
GACGCATCTGTGATCGCGACGGTCGCGACAGCGAAGTACGTCGACGGCATGCCGTTGTACCGGATGCAGGAGGCGCTCGCACGCTGGCAAATCCCGGTGA
GTCGCGGCACGCTTGCACACTGGGTCATCCGCCCCAGCGGACTGCACTACAGTCGCTTGTACGATGCGCTGCGTAAAACGTTGCTGTCGCAGCCGTTGAT
TCACGGCGATGAAACGACGGTTCAGGTACTCAAGGAACCTGGCAGGTCCGCGCAGAGCAAGAGTTACATGTGGTGCTACCGCAGCGCCCAGGACTGCGCC
GAGCCCGGCGTGCTGTTCGAGTACCAGCCGGGGCGTGGCCAGGAGCATCCGAAGAAGTTTCTCGGCGACTACAGCGGCATGCTGATGAGCGACGGCTACA
GCGCCTGGCGCACGCTCAAAAAGGCAACGCACTTCGGATGCATGGCGCACGCGCGAAGGCTGTTCGTCAAGGCGGACAAGGCGGCCACAAAGAGGACGGA
CTCTTGCAAGCAGAAGACGCCGAACGCTCGCGTAGCGAAGGCGCTCGAGTACTTCCAGGCCCTGTACCGTGTCGAGGCGCTGGCCAAAGACGATTTGCCT
GCTGGGCTCACGCGAGCCGACTATACGTACGACCTGCGGCAAAAACATAGTGCGCCGCTGCTTGAGGCCTTCAAGGCGTGGCTCGATGAACTGGCACCGA
AGGTGGCGCCCCAGAGCCTGCTCGGCAAGGCGATCGCCTACACGCGCAACCAGTGGGAATATCTCAGCCGCTACGTCACAGATGGTTGCGCCCCCATCGA
TAACAATGTGATCGAGCGCGACGTCAGGCCGTTTGCCACTTCGAGGAAAAGCTGGCTGTTCAGCGACACGGTGGATGGCGCGAAGGCGAGTGCCACTGTA
TATAGCCTGGTACTGACATGCCGGGCTTGCGGCGTCGAGCCGTACGACTACCTGCTGCACGTACTAACGGAGTTGCCGCAGCGTGCGCCCGATGCAGACG
TGACCGACCTGCTGCCGTTCAATTATGCGCGGCAACAGCAGACCAAGGCACAGACCGGCTGACGTACCGGCCGCGCGTCGGTAGCATGACTGCGCGCCTT
CCATCCCCCCGATGCAGACATCGCCGGTTGATCTCTACCGCCCGCGGTGCAGCTACGTTCGGCCGTCACTTGCAAATGATTCTCCATTCGGTGTGCTAAA
GCTCGCGCTTACGTTTGACCACCCCTCGGGAGATCCCGACGTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
354 bp | 117 aa | 78 | 431 | + | No |
AG : IS66 TnpB
ORF sequence :
MLSFADDLRVYLYREPIDFRCGINTLAALVEDSMRLDPLARAVYAFHNRKCDRIKLLLYERTGFWLLLRRLEQDRFVWPRRHQEVIELTTQQLHWLLDGI
DIDALRRHPVRHYQHAS
DIDALRRHPVRHYQHAS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1641 bp | 546 aa | 522 | 2162 | + | No |
Chemistry : DDE
ORF sequence :
MNNAPDLKRVPRAVQGYIHALEARVAGDAKHIDELNLRVEQLEEQVRLLQAERFAPKSEKRKDRVFDEAEQIARTEPCDEDDEGVQPALPDTGLPPASQP
ERRKAGRKPLPAYLRREPVEYDLPEDQRGCPCCGNPMHRIGEDVSEQLHVEVKWTVRKNVRSKWACRHCERHAERTPVVLAPMPVQPIPGSHADASVIAT
VATAKYVDGMPLYRMQEALARWQIPVSRGTLAHWVIRPSGLHYSRLYDALRKTLLSQPLIHGDETTVQVLKEPGRSAQSKSYMWCYRSAQDCAEPGVLFE
YQPGRGQEHPKKFLGDYSGMLMSDGYSAWRTLKKATHFGCMAHARRLFVKADKAATKRTDSCKQKTPNARVAKALEYFQALYRVEALAKDDLPAGLTRAD
YTYDLRQKHSAPLLEAFKAWLDELAPKVAPQSLLGKAIAYTRNQWEYLSRYVTDGCAPIDNNVIERDVRPFATSRKSWLFSDTVDGAKASATVYSLVLTC
RACGVEPYDYLLHVLTELPQRAPDADVTDLLPFNYARQQQTKAQTG
ERRKAGRKPLPAYLRREPVEYDLPEDQRGCPCCGNPMHRIGEDVSEQLHVEVKWTVRKNVRSKWACRHCERHAERTPVVLAPMPVQPIPGSHADASVIAT
VATAKYVDGMPLYRMQEALARWQIPVSRGTLAHWVIRPSGLHYSRLYDALRKTLLSQPLIHGDETTVQVLKEPGRSAQSKSYMWCYRSAQDCAEPGVLFE
YQPGRGQEHPKKFLGDYSGMLMSDGYSAWRTLKKATHFGCMAHARRLFVKADKAATKRTDSCKQKTPNARVAKALEYFQALYRVEALAKDDLPAGLTRAD
YTYDLRQKHSAPLLEAFKAWLDELAPKVAPQSLLGKAIAYTRNQWEYLSRYVTDGCAPIDNNVIERDVRPFATSRKSWLFSDTVDGAKASATVYSLVLTC
RACGVEPYDYLLHVLTELPQRAPDADVTDLLPFNYARQQQTKAQTG
Blast result :
Comments
ISBmu30 orfA is 79% aa similar to IS1313, and ISBmu30 orfB (the Transposase) is 71% aa similar to IS692.
References
1] Ohtsubo,Y., Yuji,N. and Tsuda,M. (2007) Direct submission GenBank.