ISAtc3

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010600 ND Acidithiobacillus caldus
Acidithiobacillus caldus plasmid pTcM1
DNA section
IS Length : 1302 bp

Ends


IR Length : 20/26

IRL : GGCTCTTCGTCAGATTGAGTGGGTAGGGGGTAGAATGCTGTGGAGCAGTC
IRR : GGTTCCTCGTCATTTCAAGTGGGTAGCCTGAGATCCAGCTTACCCAGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTGGATACGAGAAACACGATGGGAAA8

DNA sequence

GGCTCTTCGTCAGATTGAGTGGGTAGGGGGTAGAATGCTGTGGAGCAGTCGTGCCCTGAATAGGAGTTAGCTGATGGTCCCTGAAGAGCTGTTTTCTCTC
GCGTTGGGATTGGTTCCTCCGTGGTTGGTGGATCACGTGACTTTCACGGTGGAGGAGAAACGCCTGGATCTACACATCAACTTTCCCAAGGGTAGTCGCT
TTGCTTGCTCCGTCTGTGGTGAGGAGTGTCCGGTACATGACACCCGTGACCATACCTGGCGGCACATGGATTTCTTCCAGCATGAAGCCTATCTCCATGC
CCGCGTACCCCGTGTGAAGTGCCTGGAGCATGGGGTGCATCAGATACCTGTTCCCTGGGCACGGGAAGGCTCGCATTTCACCCTGCTCTTCGAAGCGCTG
ATCATGACCCTGGTGCGGGAGATGCCGGTATTGACGGCAGCCCGCATGGTCGGCGAGACCGACAAGCTCCTGTGGCGAGTGATTGACCATTATGTGCCCG
AAGCTCGTGCTGCGGTGGATATGGCCAATGTCCATGCCGTCGGCGTCGATGAAACCAGCAGTCGGCGCGGCCATGACTACATCACGCTCTTCGTGGATCT
GAATGCCCGGCGACTCTTGTTCGCTACTCCCGGCAAGGATGCCAAGACCTTTGAGAAATTCTCCGCAGATCTACAGGCCCATGGTGGTAGCGCGGAAGCG
ATCACCGATGTGAGCATGGACCTCTCGCCGGCCTTCCAGAAAGGGGCTGCCGAGCACCTGCCCAATGCTGAGATCACTTTCGATCGTTTTCACCTCATGA
AGCTCGTCAACGAGGCCGTAGACGACGTGCGCAAGGGGGAAGTCCTCACCCAGCCAAATCTCAAAAAGACCCGCTGGCTCTGGCTCAAGAACGATTGCAA
CCTCAAGGTGAAGCAGAAAGAAAAGCTGCAGGAATTGCTCAAAGACCAGAACCTCAAAACGGCTCAGGCCTACCAGTTTCGGCTGACCTTTCAGGACATC
TTCACGGTCAAGAATCGCCACCAGGGCGCCACCCTGCTCAAGGCCTGGATGGAAAACGCCAAGGACAGCGGTTTACCCCCTATCGTCAAGGTCGCCTACA
CCATCATGAATCACTGGGACGGCGTGCTCCGCTGGTTCGAGAGCCAGATCACCAACGGGATTCTCGAAGGCTTCAACAGCCTCATCCAATCCGCCAAGGC
GAAAGCCCGGGGTTACCGCACCCACAAGAATTTTATCAACATGGCCTACCTGATCCTGGGTAAGCTGGATCTCAGGCTACCCACTTGAAATGACGAGGAA
CC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1215 bp404 aa741288+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MVPEELFSLALGLVPPWLVDHVTFTVEEKRLDLHINFPKGSRFACSVCGEECPVHDTRDHTWRHMDFFQHEAYLHARVPRVKCLEHGVHQIPVPWAREGS
HFTLLFEALIMTLVREMPVLTAARMVGETDKLLWRVIDHYVPEARAAVDMANVHAVGVDETSSRRGHDYITLFVDLNARRLLFATPGKDAKTFEKFSADL
QAHGGSAEAITDVSMDLSPAFQKGAAEHLPNAEITFDRFHLMKLVNEAVDDVRKGEVLTQPNLKKTRWLWLKNDCNLKVKQKEKLQELLKDQNLKTAQAY
QFRLTFQDIFTVKNRHQGATLLKAWMENAKDSGLPPIVKVAYTIMNHWDGVLRWFESQITNGILEGFNSLIQSAKAKARGYRTHKNFINMAYLILGKLDL
RLPT

 

Blast result :
Comments
ISAtc3 is 98% aa similar to ISAtc1.
References
1] ISfinder annotation (2010)
2] van Zyl,L.J., Louw,L.-A., Deane,S.M. and Rawlings,D.E.(2008) Direct submission GenBank.