ISHwa15

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1845 bp

Ends


IR Length : 13/14

IRL : AGGAGTTCGGAACGACAGATTTTGTGCACGAGACGGGTGGCTAACCAGGC
IRR : AGGAGTTCGGAATGTGCATCAACTGCTGGTGGGTGGTAGTTAATATCACC

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTGTCTGCGCCTCGTCGTCGCAATCA8

DNA sequence

AGGAGTTCGGAACGACAGATTTTGTGCACGAGACGGGTGGCTAACCAGGCTTGGTTACCAGTGTTGAGAGGATGTCACAGAAGACACCCGAGTTCGAGCC
GGTCATCAGGCGGCTCGAACGCCAAGCTGCCGAGTCGATATATAAAGACACCGATCTCCTCACCGTTGTCACTGAGTTCGCGTTTACTGATACGCCCGTT
TCTGGCACGGCTGCAAAGGAATGGGAGGCGAAGTACGGCTATCGACCGATGGTATGCGCGTTCTACTGCAAGGAACTTGCGGGATTCATGACTACAGGAC
TCTACGAGTATCTTGCCGACGCCGAGCGTGCCTGCGCCCGCACGCTCGGCTTCGATCCCGAGCAATTCGCTCCTGACAAGACTGCTCCAGACCGAACTAC
ACTTGGCCGCACATGGCGTGATCGCTTCTCTGACCGGCTCAAATCGTTCATTACACAGTCTGCACAGCGTATCCTTGCGGTTGCCCACGAAATGGGCAAC
CCGCTCGGAATGCGCGCACTCAAACCAACCAACAAGACCGACTGTTCGAACCGGACGGAGCGACGCTACGTCACCGAGAAGGCCAAGGATGTGACGGATG
CACTCTGTCAGATTGTCTTTCCTGCAATCGATCTTCAGAGTTATCTCGGATTGACCGGCACAGCTGCCAATCAAGGCAGCCAGATGTTCGACGAAGAAAC
GACTCGCGAAGCGGGTGGACCCGCTGGTGATACGCATCTCCGGTATATCAAGCAACTCGACGTGATGGAGATCGCGTCGATGATCAATGGTGCAATTGGT
GAGATGATTTGGGCTGCCGAGCAGTACTATTCGATAGATCGCCACGTCGACGTGGCGATCGACATCACATACGTCGCGTACTACGGTAACCGCGATGAGT
TCCAGATGAGCACCGGCGCTCCACCGAGCAAGTCTTATTCGTGGTGTTACAAGATGGCAACAATCTCGATCGTTGGTGAGGAAGTGAAATTTACGCTCGG
GATGCGGCCGCTTCGCGGCTACATCCCTCGGAGCGTGCTCGTGGAACAACTGATCGATATAGCAAGCGATCATGTCTCGCTCGAGACAATGTATGCCGAT
GCTGAATTCGACAGCATCGGCGTCATTGACGCTCTCGAAGAGAAGGGCCTCTCGTACCTGATTCGCAAATCTTCGGACGACCGCGTTGATCGGTTTGTCG
TCGACATGGATCACGATGTAGCGGTCAAGCAATCCCACGAGATGAAGAAGACGAGCGGGGGCGAATCTGTGACGGTCACCCCGACCCTGGTCGGGGTTCC
CCCAACCCGGAAGGAAGATGAAACGGTGACGTTTATGACGAATCTCCAGGTGAGCGATAGCACGAAAGCAGCACGCGGGCGTACCCGCCGCATCATGGGG
CGGTACGCTCGGAGGTGGGGGATTGAGAACAGCTACAAGTCAATCAAAGATTTCCTGGCATGGACGACATCACGGAATACGGCAGTACGAGTATTCTACT
TCAGCTTTGTGGTGATTCTCTATGATATGTGGTTGGTGGTGGATCTGCTGGTACAGATCAGTCTCACCGTCAAGCAGCGACTGAAACCGCGTGTGCCTGC
CCGGACGTTCCTGAATATCGTGCGCAAGGAGATGCCCGTGACGTAGGCGTTCCGCCGCGCCGGGCGGAACGCCGACTCGTGAGATACATCTCTCTGCAGT
CCGGTCATTTTCGCCCCACTATTCGTCGAAATCAGTAGTTCGTTCGATTATTTCCCCAGGCAAAATGTAGTCCAATATTATTCCACCAATATATTGGTGA
TATTAACTACCACCCACCAGCAGTTGATGCACATTCCGAACTCCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1575 bp524 aa721646+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSQKTPEFEPVIRRLERQAAESIYKDTDLLTVVTEFAFTDTPVSGTAAKEWEAKYGYRPMVCAFYCKELAGFMTTGLYEYLADAERACARTLGFDPEQFA
PDKTAPDRTTLGRTWRDRFSDRLKSFITQSAQRILAVAHEMGNPLGMRALKPTNKTDCSNRTERRYVTEKAKDVTDALCQIVFPAIDLQSYLGLTGTAAN
QGSQMFDEETTREAGGPAGDTHLRYIKQLDVMEIASMINGAIGEMIWAAEQYYSIDRHVDVAIDITYVAYYGNRDEFQMSTGAPPSKSYSWCYKMATISI
VGEEVKFTLGMRPLRGYIPRSVLVEQLIDIASDHVSLETMYADAEFDSIGVIDALEEKGLSYLIRKSSDDRVDRFVVDMDHDVAVKQSHEMKKTSGGESV
TVTPTLVGVPPTRKEDETVTFMTNLQVSDSTKAARGRTRRIMGRYARRWGIENSYKSIKDFLAWTTSRNTAVRVFYFSFVVILYDMWLVVDLLVQISLTV
KQRLKPRVPARTFLNIVRKEMPVT

 

Blast result :
Comments
In the genome sequence, this IS is interrupted by a 108 bp repeat after base 848 (after transposase amino acid 259).
ISHwa15 is 40% aa similar to ISH7B.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968