ISEc32

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011747 ND Escherichia coli
Escherichia coli str. S88 plasmid pECOS88
Escherichia coli SMS-3-5 plasmid pSMS35_130
Salmonella enterica subsp. enterica sv. Kentucky CVM29188 plasmid pCVM29188_146
Escherichia coli plasmid p1658/97
DNA section
IS Length : 1180 bp

Ends


Left end : ATATCTTGAAGATGGCATAAACTGAATCTGTAGGTCTGGCAAAGCTCATGCAGCACGTGCGAACCCGAGGGTATTAAGCCCGCATGCAAGCGTCCCGCGC
Right end : AATACCATGCTCAGAAAAGGGGAAGAGTGGAACGCCTCATTTCAATCACAGGTAATCTCATGACTGCCGGTCATTTTACATAATGACAGAAAGAACAACT

Insertion site


Left flankDirect repeatRight flankDR Length
GCGAAGCGTATCCTTTATCCCGCAGGCCTG0
GCGAAGCGTATCCTTGGTAATGACTCCAAC0
GCGAAGCGTATCCTTTATCCCGCAGGCCTG0

DNA sequence

ATATCTTGAAGATGGCATAAACTGAATCTGTAGGTCTGGCAAAGCTCATGCAGCACGTGCGAACCCGAGGGTATTAAGCCCGCATGCAAGCGTCCCGCGC
ATGAGCTGAGTCACTCATCACAAATCCGTACAGTTGATTGAAACCAAATTCGTATCGTAAGGAAGGGTCATATGAGTCAACCAAATCTGCAATGCATGGG
TATTGATGTTGCCAAACTATCGCTGGACATCGCCACCACCGACACGATTGAGCCATTCACTGTGGGTAACGATGAGGATGGTTTCGCTGTTATCACAGAT
AAACTGAAGCACACCAAAATTAACCTGATTCTCATGGAAGCTACCGGTGGCCTTGAAGCAGCCATTGCCTGTAAGCTTCAGTCAGAAGGATACGATGTGG
TTGTGATCAACCCACGACAGGCTAGGGATTTTGCCCGTTCAATGGGATATCTGGCTAAAACAGATAAACTTGACGCCGCCATGCTAGCACAACTGGCCCT
GGTCATTGATCGCCATCCGGACCGCAGTCGTTATATACGGCATCTGCCAGATGAGGCACGAGCAGTACTTGCCGCAATGGTCGTCCGTCGTCGTCAGTTG
AACCATATGCTGGTCGCTGAGCGTAATCGTCTCTATCCTTCTCATCCCCAAAGCAGGAAGAGTATCGATAACATTATTGATGCGCTTCAAAACGAGCTCG
ACCGGATCAATGAGCAAATGAAACAACACATGACAGCATTCTTCCAGGAGCAGGCCAGACTGATAGGCAGCGTGAAAGGCGTCGGCGATATCACCGTCGC
GTCGCTGATTGCCGAACTACCGGAACAGGGGAAACTCAATCGACGGGAGATTAGTGCTCTAACTGGCGTCGCTCCTCTAAACAGAGACTCCGGGAAAATG
CGAGGGAAACGGACCACGTTTGGTGGCAGAGCCGGAGTGAGAGCAACGTTGAACATGGCAGCTCTGGTGGCTACGCAGTTTAATCCTGCCATAAAGCTGT
TCTACCAGCGTTTGCTTGCCGCCGGAAAACCCAAAAAACTTGCTCTGGTCGCCTGCATGCGCAAACTCATCACCATTCTGAATACCATGCTCAGAAAAGG
GGAAGAGTGGAACGCCTCATTTCAATCACAGGTAATCTCATGACTGCCGGTCATTTTACATAATGACAGAAAGAACAACT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa1721143+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSQPNLQCMGIDVAKLSLDIATTDTIEPFTVGNDEDGFAVITDKLKHTKINLILMEATGGLEAAIACKLQSEGYDVVVINPRQARDFARSMGYLAKTDKL
DAAMLAQLALVIDRHPDRSRYIRHLPDEARAVLAAMVVRRRQLNHMLVAERNRLYPSHPQSRKSIDNIIDALQNELDRINEQMKQHMTAFFQEQARLIGS
VKGVGDITVASLIAELPEQGKLNRREISALTGVAPLNRDSGKMRGKRTTFGGRAGVRATLNMAALVATQFNPAIKLFYQRLLAAGKPKKLALVACMRKLI
TILNTMLRKGEEWNASFQSQVIS

 

Blast result :
Comments
ISEc32 is 66% aa similar to ISBcen8.
References
1] ISfinder annotation (2010)
2] Peigne,C., Bidet,P., Mahjoub-Messai,F., Plainvert,C., Barbe,V., Medigue,C., Frapy,E., Nassif,X., Denamur,E., Bingen,E. and Bonacorsi,S.(2009) Infect. Immun. 77 (6), 2272-2284