ISEc32
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011747 | ND | Escherichia coli | Escherichia coli str. S88 plasmid pECOS88 Escherichia coli SMS-3-5 plasmid pSMS35_130 Salmonella enterica subsp. enterica sv. Kentucky CVM29188 plasmid pCVM29188_146 Escherichia coli plasmid p1658/97 |
DNA section
IS Length : 1180 bp
Ends
Left end : ATATCTTGAAGATGGCATAAACTGAATCTGTAGGTCTGGCAAAGCTCATGCAGCACGTGCGAACCCGAGGGTATTAAGCCCGCATGCAAGCGTCCCGCGC
Right end : AATACCATGCTCAGAAAAGGGGAAGAGTGGAACGCCTCATTTCAATCACAGGTAATCTCATGACTGCCGGTCATTTTACATAATGACAGAAAGAACAACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGAAGCGTATCCTT | TATCCCGCAGGCCTG | 0 | |
GCGAAGCGTATCCTT | GGTAATGACTCCAAC | 0 | |
GCGAAGCGTATCCTT | TATCCCGCAGGCCTG | 0 |
DNA sequence
ATATCTTGAAGATGGCATAAACTGAATCTGTAGGTCTGGCAAAGCTCATGCAGCACGTGCGAACCCGAGGGTATTAAGCCCGCATGCAAGCGTCCCGCGC
ATGAGCTGAGTCACTCATCACAAATCCGTACAGTTGATTGAAACCAAATTCGTATCGTAAGGAAGGGTCATATGAGTCAACCAAATCTGCAATGCATGGG
TATTGATGTTGCCAAACTATCGCTGGACATCGCCACCACCGACACGATTGAGCCATTCACTGTGGGTAACGATGAGGATGGTTTCGCTGTTATCACAGAT
AAACTGAAGCACACCAAAATTAACCTGATTCTCATGGAAGCTACCGGTGGCCTTGAAGCAGCCATTGCCTGTAAGCTTCAGTCAGAAGGATACGATGTGG
TTGTGATCAACCCACGACAGGCTAGGGATTTTGCCCGTTCAATGGGATATCTGGCTAAAACAGATAAACTTGACGCCGCCATGCTAGCACAACTGGCCCT
GGTCATTGATCGCCATCCGGACCGCAGTCGTTATATACGGCATCTGCCAGATGAGGCACGAGCAGTACTTGCCGCAATGGTCGTCCGTCGTCGTCAGTTG
AACCATATGCTGGTCGCTGAGCGTAATCGTCTCTATCCTTCTCATCCCCAAAGCAGGAAGAGTATCGATAACATTATTGATGCGCTTCAAAACGAGCTCG
ACCGGATCAATGAGCAAATGAAACAACACATGACAGCATTCTTCCAGGAGCAGGCCAGACTGATAGGCAGCGTGAAAGGCGTCGGCGATATCACCGTCGC
GTCGCTGATTGCCGAACTACCGGAACAGGGGAAACTCAATCGACGGGAGATTAGTGCTCTAACTGGCGTCGCTCCTCTAAACAGAGACTCCGGGAAAATG
CGAGGGAAACGGACCACGTTTGGTGGCAGAGCCGGAGTGAGAGCAACGTTGAACATGGCAGCTCTGGTGGCTACGCAGTTTAATCCTGCCATAAAGCTGT
TCTACCAGCGTTTGCTTGCCGCCGGAAAACCCAAAAAACTTGCTCTGGTCGCCTGCATGCGCAAACTCATCACCATTCTGAATACCATGCTCAGAAAAGG
GGAAGAGTGGAACGCCTCATTTCAATCACAGGTAATCTCATGACTGCCGGTCATTTTACATAATGACAGAAAGAACAACT
ATGAGCTGAGTCACTCATCACAAATCCGTACAGTTGATTGAAACCAAATTCGTATCGTAAGGAAGGGTCATATGAGTCAACCAAATCTGCAATGCATGGG
TATTGATGTTGCCAAACTATCGCTGGACATCGCCACCACCGACACGATTGAGCCATTCACTGTGGGTAACGATGAGGATGGTTTCGCTGTTATCACAGAT
AAACTGAAGCACACCAAAATTAACCTGATTCTCATGGAAGCTACCGGTGGCCTTGAAGCAGCCATTGCCTGTAAGCTTCAGTCAGAAGGATACGATGTGG
TTGTGATCAACCCACGACAGGCTAGGGATTTTGCCCGTTCAATGGGATATCTGGCTAAAACAGATAAACTTGACGCCGCCATGCTAGCACAACTGGCCCT
GGTCATTGATCGCCATCCGGACCGCAGTCGTTATATACGGCATCTGCCAGATGAGGCACGAGCAGTACTTGCCGCAATGGTCGTCCGTCGTCGTCAGTTG
AACCATATGCTGGTCGCTGAGCGTAATCGTCTCTATCCTTCTCATCCCCAAAGCAGGAAGAGTATCGATAACATTATTGATGCGCTTCAAAACGAGCTCG
ACCGGATCAATGAGCAAATGAAACAACACATGACAGCATTCTTCCAGGAGCAGGCCAGACTGATAGGCAGCGTGAAAGGCGTCGGCGATATCACCGTCGC
GTCGCTGATTGCCGAACTACCGGAACAGGGGAAACTCAATCGACGGGAGATTAGTGCTCTAACTGGCGTCGCTCCTCTAAACAGAGACTCCGGGAAAATG
CGAGGGAAACGGACCACGTTTGGTGGCAGAGCCGGAGTGAGAGCAACGTTGAACATGGCAGCTCTGGTGGCTACGCAGTTTAATCCTGCCATAAAGCTGT
TCTACCAGCGTTTGCTTGCCGCCGGAAAACCCAAAAAACTTGCTCTGGTCGCCTGCATGCGCAAACTCATCACCATTCTGAATACCATGCTCAGAAAAGG
GGAAGAGTGGAACGCCTCATTTCAATCACAGGTAATCTCATGACTGCCGGTCATTTTACATAATGACAGAAAGAACAACT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 172 | 1143 | + | No |
Chemistry : DEDD
ORF sequence :
MSQPNLQCMGIDVAKLSLDIATTDTIEPFTVGNDEDGFAVITDKLKHTKINLILMEATGGLEAAIACKLQSEGYDVVVINPRQARDFARSMGYLAKTDKL
DAAMLAQLALVIDRHPDRSRYIRHLPDEARAVLAAMVVRRRQLNHMLVAERNRLYPSHPQSRKSIDNIIDALQNELDRINEQMKQHMTAFFQEQARLIGS
VKGVGDITVASLIAELPEQGKLNRREISALTGVAPLNRDSGKMRGKRTTFGGRAGVRATLNMAALVATQFNPAIKLFYQRLLAAGKPKKLALVACMRKLI
TILNTMLRKGEEWNASFQSQVIS
DAAMLAQLALVIDRHPDRSRYIRHLPDEARAVLAAMVVRRRQLNHMLVAERNRLYPSHPQSRKSIDNIIDALQNELDRINEQMKQHMTAFFQEQARLIGS
VKGVGDITVASLIAELPEQGKLNRREISALTGVAPLNRDSGKMRGKRTTFGGRAGVRATLNMAALVATQFNPAIKLFYQRLLAAGKPKKLALVACMRKLI
TILNTMLRKGEEWNASFQSQVIS
Blast result :
Comments
ISEc32 is 66% aa similar to ISBcen8.
References
1] ISfinder annotation (2010)
2] Peigne,C., Bidet,P., Mahjoub-Messai,F., Plainvert,C., Barbe,V., Medigue,C., Frapy,E., Nassif,X., Denamur,E., Bingen,E. and Bonacorsi,S.(2009) Infect. Immun. 77 (6), 2272-2284
2] Peigne,C., Bidet,P., Mahjoub-Messai,F., Plainvert,C., Barbe,V., Medigue,C., Frapy,E., Nassif,X., Denamur,E., Bingen,E. and Bonacorsi,S.(2009) Infect. Immun. 77 (6), 2272-2284