ISHwa9
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1511 bp
Ends
IR Length : 21/23
IRL : CTGTCGCGTTCTGAGTATATAAAAACGGCGTGAGCCGTTAGTGACGGCCC
IRR : CTGTCGCGTTCTGAGTTAATAAAGCCCCGGAGAAATCAATCTCTCGGAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTCCTCACTA | CTATTATC | TCTGAAGAATTC | 8 |
TGTAACATATAG | CTGAGATG | CGTCAATCTCAG | 8 |
DNA sequence
CTGTCGCGTTCTGAGTATATAAAAACGGCGTGAGCCGTTAGTGACGGCCCGTAATGTCTGTGCAATTTGATTCAGCAAACAGGCCGTCAGAAGACGTAAC
GGACGCCTCTAATATCAATTCTACTGATCTCGTCGCTGACGAACTGTACTCGCTGCTCGACGAAGTCGACAGCGAGTCGATTGCCGATGAGTTCAAGATT
GGGCTCCATTCCGACAAACATGACTTCACGAACCACGTCAAGACGGTTGTTCGTGAGGGTCTTGACCCCTCCAGCTCACTCGCTGAACTTGAGGATAAAA
CCATTGTCGACGACTCACTCGAACACATGCCTAAATCACGGTTTTCAGAACTCACGAACGACCGCGACTACCGTGCGGTCGTTCGTCTCCTATTCGAGTT
ACTGCACACGCCACAGTTGTATCATCAACGTGGAGTTCAACGAAAACGACTGGGGTGGATGACACGAGGTGTTGTCGCTGTTGATGCCACAAACCTCGAA
CTTACGCGCTCTGTTGTCGTCTCAGACGAGTTCGTCGGAGACGATGAAGACATCTACGAGATAGACACGGATGGCGGAGGAGTTGAGCTTCACTGTGCCG
CACGTGTAGACGGCAAACACAAGCATCCGCTTGGTGCAACTGTCACAGAAGGCGATACCCACGAAAGCCCGCAGTTCGATCTCCTTGAAGACGATGTCGA
GGTCTTCGCAGACCTCGACTCGGTCATCTGGACGTTTGACCGTGCATACACGCGATATCTACGGTTCTGTGAGATCAAGCACAGTGACAATGATTTTGTC
ACACTGATGTACTCAGACGCTCGATTTGAACTCATTGAGACACTCGAAGAGTTTGAAGTCAGCATTACTCCCGAGAGAGGCGCTCAGCCAAGGGATTCTG
CTGACGAATCGACACGGCAGGTTCGTGATGAGCGAATTGAGTTAGCCGAGACTGGTGAGGAGTTTCGTCGGATTGTTCTGAACGCGCCAGATGGAGAAGA
GATCGAGTACCTGACGACGCTGGCGTCGTCAGCGTACGACCCTATCGATGTGATCAGTATCTACACGCTTCGAACTTGCATCGAGATTCTGTTTCGGGAG
CTGAAGCAGTATCTCAACATCGAGAACTTTCACTCGAAATCGCTGAACGGCGTCTTGTTCGAGCTGTTCTGTGCGCTGATTGGCTACGTGCTTGTCGAGT
GGTTCCGCCAGTGCCACCCAGTCAAGGGTGGCATGGCGCGTGCAATTCAACAAGTCCGGACCTTCTGGAATAAGACGCTGGATACGTTCGGCTGATTACC
ACTCAATCACCGGTGACAGCCGTCGCCCGCCAGCGACGGCTGTCGCCCGACCCGTGATTTTCCTCTTCTATGACCCTGAGACGCCGTTTCTCTCGGTCCA
ACATCTGGTTCATTGGCAGCTTTTCGGAGCTGAACACTCTCGACAATCCTGATCCAGCTACTCTCCGAGAGATTGATTTCTCCGGGGCTTTATTAACTCA
GAACGCGACAG
GGACGCCTCTAATATCAATTCTACTGATCTCGTCGCTGACGAACTGTACTCGCTGCTCGACGAAGTCGACAGCGAGTCGATTGCCGATGAGTTCAAGATT
GGGCTCCATTCCGACAAACATGACTTCACGAACCACGTCAAGACGGTTGTTCGTGAGGGTCTTGACCCCTCCAGCTCACTCGCTGAACTTGAGGATAAAA
CCATTGTCGACGACTCACTCGAACACATGCCTAAATCACGGTTTTCAGAACTCACGAACGACCGCGACTACCGTGCGGTCGTTCGTCTCCTATTCGAGTT
ACTGCACACGCCACAGTTGTATCATCAACGTGGAGTTCAACGAAAACGACTGGGGTGGATGACACGAGGTGTTGTCGCTGTTGATGCCACAAACCTCGAA
CTTACGCGCTCTGTTGTCGTCTCAGACGAGTTCGTCGGAGACGATGAAGACATCTACGAGATAGACACGGATGGCGGAGGAGTTGAGCTTCACTGTGCCG
CACGTGTAGACGGCAAACACAAGCATCCGCTTGGTGCAACTGTCACAGAAGGCGATACCCACGAAAGCCCGCAGTTCGATCTCCTTGAAGACGATGTCGA
GGTCTTCGCAGACCTCGACTCGGTCATCTGGACGTTTGACCGTGCATACACGCGATATCTACGGTTCTGTGAGATCAAGCACAGTGACAATGATTTTGTC
ACACTGATGTACTCAGACGCTCGATTTGAACTCATTGAGACACTCGAAGAGTTTGAAGTCAGCATTACTCCCGAGAGAGGCGCTCAGCCAAGGGATTCTG
CTGACGAATCGACACGGCAGGTTCGTGATGAGCGAATTGAGTTAGCCGAGACTGGTGAGGAGTTTCGTCGGATTGTTCTGAACGCGCCAGATGGAGAAGA
GATCGAGTACCTGACGACGCTGGCGTCGTCAGCGTACGACCCTATCGATGTGATCAGTATCTACACGCTTCGAACTTGCATCGAGATTCTGTTTCGGGAG
CTGAAGCAGTATCTCAACATCGAGAACTTTCACTCGAAATCGCTGAACGGCGTCTTGTTCGAGCTGTTCTGTGCGCTGATTGGCTACGTGCTTGTCGAGT
GGTTCCGCCAGTGCCACCCAGTCAAGGGTGGCATGGCGCGTGCAATTCAACAAGTCCGGACCTTCTGGAATAAGACGCTGGATACGTTCGGCTGATTACC
ACTCAATCACCGGTGACAGCCGTCGCCCGCCAGCGACGGCTGTCGCCCGACCCGTGATTTTCCTCTTCTATGACCCTGAGACGCCGTTTCTCTCGGTCCA
ACATCTGGTTCATTGGCAGCTTTTCGGAGCTGAACACTCTCGACAATCCTGATCCAGCTACTCTCCGAGAGATTGATTTCTCCGGGGCTTTATTAACTCA
GAACGCGACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 54 | 1295 | + | No |
Chemistry : DDE
ORF sequence :
MSVQFDSANRPSEDVTDASNINSTDLVADELYSLLDEVDSESIADEFKIGLHSDKHDFTNHVKTVVREGLDPSSSLAELEDKTIVDDSLEHMPKSRFSEL
TNDRDYRAVVRLLFELLHTPQLYHQRGVQRKRLGWMTRGVVAVDATNLELTRSVVVSDEFVGDDEDIYEIDTDGGGVELHCAARVDGKHKHPLGATVTEG
DTHESPQFDLLEDDVEVFADLDSVIWTFDRAYTRYLRFCEIKHSDNDFVTLMYSDARFELIETLEEFEVSITPERGAQPRDSADESTRQVRDERIELAET
GEEFRRIVLNAPDGEEIEYLTTLASSAYDPIDVISIYTLRTCIEILFRELKQYLNIENFHSKSLNGVLFELFCALIGYVLVEWFRQCHPVKGGMARAIQQ
VRTFWNKTLDTFG
TNDRDYRAVVRLLFELLHTPQLYHQRGVQRKRLGWMTRGVVAVDATNLELTRSVVVSDEFVGDDEDIYEIDTDGGGVELHCAARVDGKHKHPLGATVTEG
DTHESPQFDLLEDDVEVFADLDSVIWTFDRAYTRYLRFCEIKHSDNDFVTLMYSDARFELIETLEEFEVSITPERGAQPRDSADESTRQVRDERIELAET
GEEFRRIVLNAPDGEEIEYLTTLASSAYDPIDVISIYTLRTCIEILFRELKQYLNIENFHSKSLNGVLFELFCALIGYVLVEWFRQCHPVKGGMARAIQQ
VRTFWNKTLDTFG
Blast result :
Comments
ISHwa9 is 93% aa similar to ISHwa8.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968