ISHwa9

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1511 bp

Ends


IR Length : 21/23

IRL : CTGTCGCGTTCTGAGTATATAAAAACGGCGTGAGCCGTTAGTGACGGCCC
IRR : CTGTCGCGTTCTGAGTTAATAAAGCCCCGGAGAAATCAATCTCTCGGAGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTCCTCACTACTATTATCTCTGAAGAATTC8
TGTAACATATAGCTGAGATGCGTCAATCTCAG8

DNA sequence

CTGTCGCGTTCTGAGTATATAAAAACGGCGTGAGCCGTTAGTGACGGCCCGTAATGTCTGTGCAATTTGATTCAGCAAACAGGCCGTCAGAAGACGTAAC
GGACGCCTCTAATATCAATTCTACTGATCTCGTCGCTGACGAACTGTACTCGCTGCTCGACGAAGTCGACAGCGAGTCGATTGCCGATGAGTTCAAGATT
GGGCTCCATTCCGACAAACATGACTTCACGAACCACGTCAAGACGGTTGTTCGTGAGGGTCTTGACCCCTCCAGCTCACTCGCTGAACTTGAGGATAAAA
CCATTGTCGACGACTCACTCGAACACATGCCTAAATCACGGTTTTCAGAACTCACGAACGACCGCGACTACCGTGCGGTCGTTCGTCTCCTATTCGAGTT
ACTGCACACGCCACAGTTGTATCATCAACGTGGAGTTCAACGAAAACGACTGGGGTGGATGACACGAGGTGTTGTCGCTGTTGATGCCACAAACCTCGAA
CTTACGCGCTCTGTTGTCGTCTCAGACGAGTTCGTCGGAGACGATGAAGACATCTACGAGATAGACACGGATGGCGGAGGAGTTGAGCTTCACTGTGCCG
CACGTGTAGACGGCAAACACAAGCATCCGCTTGGTGCAACTGTCACAGAAGGCGATACCCACGAAAGCCCGCAGTTCGATCTCCTTGAAGACGATGTCGA
GGTCTTCGCAGACCTCGACTCGGTCATCTGGACGTTTGACCGTGCATACACGCGATATCTACGGTTCTGTGAGATCAAGCACAGTGACAATGATTTTGTC
ACACTGATGTACTCAGACGCTCGATTTGAACTCATTGAGACACTCGAAGAGTTTGAAGTCAGCATTACTCCCGAGAGAGGCGCTCAGCCAAGGGATTCTG
CTGACGAATCGACACGGCAGGTTCGTGATGAGCGAATTGAGTTAGCCGAGACTGGTGAGGAGTTTCGTCGGATTGTTCTGAACGCGCCAGATGGAGAAGA
GATCGAGTACCTGACGACGCTGGCGTCGTCAGCGTACGACCCTATCGATGTGATCAGTATCTACACGCTTCGAACTTGCATCGAGATTCTGTTTCGGGAG
CTGAAGCAGTATCTCAACATCGAGAACTTTCACTCGAAATCGCTGAACGGCGTCTTGTTCGAGCTGTTCTGTGCGCTGATTGGCTACGTGCTTGTCGAGT
GGTTCCGCCAGTGCCACCCAGTCAAGGGTGGCATGGCGCGTGCAATTCAACAAGTCCGGACCTTCTGGAATAAGACGCTGGATACGTTCGGCTGATTACC
ACTCAATCACCGGTGACAGCCGTCGCCCGCCAGCGACGGCTGTCGCCCGACCCGTGATTTTCCTCTTCTATGACCCTGAGACGCCGTTTCTCTCGGTCCA
ACATCTGGTTCATTGGCAGCTTTTCGGAGCTGAACACTCTCGACAATCCTGATCCAGCTACTCTCCGAGAGATTGATTTCTCCGGGGCTTTATTAACTCA
GAACGCGACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa541295+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSVQFDSANRPSEDVTDASNINSTDLVADELYSLLDEVDSESIADEFKIGLHSDKHDFTNHVKTVVREGLDPSSSLAELEDKTIVDDSLEHMPKSRFSEL
TNDRDYRAVVRLLFELLHTPQLYHQRGVQRKRLGWMTRGVVAVDATNLELTRSVVVSDEFVGDDEDIYEIDTDGGGVELHCAARVDGKHKHPLGATVTEG
DTHESPQFDLLEDDVEVFADLDSVIWTFDRAYTRYLRFCEIKHSDNDFVTLMYSDARFELIETLEEFEVSITPERGAQPRDSADESTRQVRDERIELAET
GEEFRRIVLNAPDGEEIEYLTTLASSAYDPIDVISIYTLRTCIEILFRELKQYLNIENFHSKSLNGVLFELFCALIGYVLVEWFRQCHPVKGGMARAIQQ
VRTFWNKTLDTFG

 

Blast result :
Comments
ISHwa9 is 93% aa similar to ISHwa8.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968