ISTel5

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s) ISEL5
Accession numberTranspositionOriginHost
NC_004113 ND Thermosynechococcus elongatus
Thermosynechococcus elongatus BP-1
DNA section
IS Length : 1083 bp

Ends


IR Length : 13

IRL : CAGAAGTGTTGAAAGATAGATTAAGAGGCTAAAAAAGAAAGAAATGTTGC
IRR : CAGAAGTGTTGAATCCTGCAACAAAACTTAACATTATAAGTGACGAGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
AATTATTCTCTCCCCTCAAGAGATTA0

DNA sequence

CAGAAGTGTTGAAAGATAGATTAAGAGGCTAAAAAAGAAAGAAATGTTGCGGTCTTCCCTTAGAAGAAGAAAGAATATCAACTTACTTTGCATCTTTTGC
AACTGTTGTCAAGTCTATTCTCAATCGGCTCAGCCCGTGTGACTACCCTGTCCTGAACTCTCAATTGTTCTTCAAAATCTGCTTGACCTACATCCTCGAC
TAACGGTTAACCAGCATGAGAGCCTTATTTTATTGCTTAAATCATTCAGGAATTACAGTAGACATCTCCACTTTTTCGAAAGCCAACAAAACTCAGGACA
CCAGCTTATTCGAAAGGATTTACACTCATCTGATGTCTTAAGCACAAAAGAGACATCATTCTCCCAGGCCGATGATATTTCCTATCGATTCAAGTGTCAT
TAGCCTGACCAGTCAACTCTTGTGTTTCTATCAATATCATCGAGTGAAGTTAATTACAGGATTTATTTAACAGCGAATATTCTGGGTAAAGCGGTGATTT
CTTTTGGGGGAGAGACATGACCTGACCTTTCAAGAGGAGATTCTAGGAATGATCTCTGAGAATGCTTTTGTTGTCATGGATAGAGGGTTTGCGAGTTGGA
AATTTTTAGAGCAACTGAGTGAGAGGAACTGTTTATTGTTGTACGTATCAAGAATAACATGAAAATGAAGTTCAATCATCATAGATATCGAGTGGCTCAA
TTTTATGACGAGAATCAAACGGAGTTTTGTCTTGCGACGAATCTAAAGCATCTGAGAGATGAAGAAGTGAGTCAACTATATCGGCATCGGTGGGCGATTG
AGAATCTATGGAAATTTCTGAAGATGCATTTATCCTTAGACAGACTGATTACGAAGAGCTTGAAGGAAGTGGTGAATCAGATTTATATGGTTTTAATTAC
ATATTTAATTTTAGAGCTAGTGGATGCACCTAAATACTTTGGGAGGAAGCTATTAGATAAATTGCGATATTTTCAACTCGAACTCAGTGGTCGGTGCTCG
ATAGTGCATTGGCGCTTTGATTGGCAGCCAGAGCAACTCGTCACTTATAATGTTAAGTTTTGTTGCAGGATTCAACACTTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
992 bp330 aa921083+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
The transposase is degenerated, there are STOP codons in frame, frameshift and the final STOP codon is missing.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.