ISTel5
- Family IS4
- Group IS4Sa
Isoform Synonym(s) ISEL5
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004113 | ND | Thermosynechococcus elongatus | Thermosynechococcus elongatus BP-1 |
DNA section
IS Length : 1083 bp
Ends
IR Length : 13
IRL : CAGAAGTGTTGAAAGATAGATTAAGAGGCTAAAAAAGAAAGAAATGTTGC
IRR : CAGAAGTGTTGAATCCTGCAACAAAACTTAACATTATAAGTGACGAGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTATTCTCTCC | CCTCAAGAGATTA | 0 |
DNA sequence
CAGAAGTGTTGAAAGATAGATTAAGAGGCTAAAAAAGAAAGAAATGTTGCGGTCTTCCCTTAGAAGAAGAAAGAATATCAACTTACTTTGCATCTTTTGC
AACTGTTGTCAAGTCTATTCTCAATCGGCTCAGCCCGTGTGACTACCCTGTCCTGAACTCTCAATTGTTCTTCAAAATCTGCTTGACCTACATCCTCGAC
TAACGGTTAACCAGCATGAGAGCCTTATTTTATTGCTTAAATCATTCAGGAATTACAGTAGACATCTCCACTTTTTCGAAAGCCAACAAAACTCAGGACA
CCAGCTTATTCGAAAGGATTTACACTCATCTGATGTCTTAAGCACAAAAGAGACATCATTCTCCCAGGCCGATGATATTTCCTATCGATTCAAGTGTCAT
TAGCCTGACCAGTCAACTCTTGTGTTTCTATCAATATCATCGAGTGAAGTTAATTACAGGATTTATTTAACAGCGAATATTCTGGGTAAAGCGGTGATTT
CTTTTGGGGGAGAGACATGACCTGACCTTTCAAGAGGAGATTCTAGGAATGATCTCTGAGAATGCTTTTGTTGTCATGGATAGAGGGTTTGCGAGTTGGA
AATTTTTAGAGCAACTGAGTGAGAGGAACTGTTTATTGTTGTACGTATCAAGAATAACATGAAAATGAAGTTCAATCATCATAGATATCGAGTGGCTCAA
TTTTATGACGAGAATCAAACGGAGTTTTGTCTTGCGACGAATCTAAAGCATCTGAGAGATGAAGAAGTGAGTCAACTATATCGGCATCGGTGGGCGATTG
AGAATCTATGGAAATTTCTGAAGATGCATTTATCCTTAGACAGACTGATTACGAAGAGCTTGAAGGAAGTGGTGAATCAGATTTATATGGTTTTAATTAC
ATATTTAATTTTAGAGCTAGTGGATGCACCTAAATACTTTGGGAGGAAGCTATTAGATAAATTGCGATATTTTCAACTCGAACTCAGTGGTCGGTGCTCG
ATAGTGCATTGGCGCTTTGATTGGCAGCCAGAGCAACTCGTCACTTATAATGTTAAGTTTTGTTGCAGGATTCAACACTTCTG
AACTGTTGTCAAGTCTATTCTCAATCGGCTCAGCCCGTGTGACTACCCTGTCCTGAACTCTCAATTGTTCTTCAAAATCTGCTTGACCTACATCCTCGAC
TAACGGTTAACCAGCATGAGAGCCTTATTTTATTGCTTAAATCATTCAGGAATTACAGTAGACATCTCCACTTTTTCGAAAGCCAACAAAACTCAGGACA
CCAGCTTATTCGAAAGGATTTACACTCATCTGATGTCTTAAGCACAAAAGAGACATCATTCTCCCAGGCCGATGATATTTCCTATCGATTCAAGTGTCAT
TAGCCTGACCAGTCAACTCTTGTGTTTCTATCAATATCATCGAGTGAAGTTAATTACAGGATTTATTTAACAGCGAATATTCTGGGTAAAGCGGTGATTT
CTTTTGGGGGAGAGACATGACCTGACCTTTCAAGAGGAGATTCTAGGAATGATCTCTGAGAATGCTTTTGTTGTCATGGATAGAGGGTTTGCGAGTTGGA
AATTTTTAGAGCAACTGAGTGAGAGGAACTGTTTATTGTTGTACGTATCAAGAATAACATGAAAATGAAGTTCAATCATCATAGATATCGAGTGGCTCAA
TTTTATGACGAGAATCAAACGGAGTTTTGTCTTGCGACGAATCTAAAGCATCTGAGAGATGAAGAAGTGAGTCAACTATATCGGCATCGGTGGGCGATTG
AGAATCTATGGAAATTTCTGAAGATGCATTTATCCTTAGACAGACTGATTACGAAGAGCTTGAAGGAAGTGGTGAATCAGATTTATATGGTTTTAATTAC
ATATTTAATTTTAGAGCTAGTGGATGCACCTAAATACTTTGGGAGGAAGCTATTAGATAAATTGCGATATTTTCAACTCGAACTCAGTGGTCGGTGCTCG
ATAGTGCATTGGCGCTTTGATTGGCAGCCAGAGCAACTCGTCACTTATAATGTTAAGTTTTGTTGCAGGATTCAACACTTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
992 bp | 330 aa | 92 | 1083 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
The transposase is degenerated, there are STOP codons in frame, frameshift and the final STOP codon is missing.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.