ISTel3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s) ISEL1
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004113 | ND | Thermosynechococcus elongatus | Thermosynechococcus elongatus BP-1 |
DNA section
IS Length : 1323 bp
Ends
Left end : CTTTACCTCCGAGAGACCCCTTCCTTTAGGGAGGGGAGGGATAGGAGCGATAGTCTGTGACTGCCAAGTATAGTTGTGTTACTCACAGAATAATCGCTAT II struct. : Yes
Right end : AGACCTGATAGGCATACGTCTGGAGGGCAACTGCGAAGAAACAGAAAGTCTCAAAAGTGATTTTGGGAATCCCCCTGCTTTAGCGGGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGAGAGAATCATTCAT | TCAT | GAAGAGTTACTGACGCGGTT | TCAA |
GGCCGCGATCGCGCCA | TCAT | CGCAAAAAGCCCCATCGCAA | TCAA |
CTTAATGAAGTAGATT | TCAT | TGGGAACATCTAGAACCGAC | TCAA |
CACGGGGCTTTGCTAA | TCAT | TGTGCCCAAGATAAACCCGA | TCAA |
CAGACCCTCGGAACCG | TTAT | CATGTACCGCGAGTCAGAAC | TCAA |
CGCCATCACTCAATTC | TCAT | TCAAGATAAAGCTTCTCTAT | TCAA |
AATGAGCGATCGCCAC | TCAT | GACAACTCCGTACACCTAGG | TCAa |
GGTTGTGGTTGTTGCG | TCAT | CGTTCCTGTGTCTTGTCCAC | TCAA |
ATCAGGACAGGAGCCG | TCAT | AGATGTAACCTCCTCGACTG | TCAA |
CAAGCGGGATCGCGAA | TCAT | CTGGCGAACTTGAAATTGAC | TCAA |
GGCTGGCGATCGCCAC | TCAT | AGCCTACTTCTGAGAATCTC | TCAA |
GAATGAGGATGTGCAT | TCAT | CTTGACATAGGAAGGCTCTA | TCAA |
ATTAGGGTTTGTAAAG | TCAT | AAAACTCCACCTAAGATAAA | TCAA |
ATGGATTATACCCATT | TCAT | TGTGGGTACTCCGCAACCGC | TCAA |
GGCTAGGAGTCCACCG | TCAT | AGTGTTGTCAAAAAGGGGTG | TCAA |
CTGGCGTCTTGACTAT | TCAT | TATTTGACTATTCATCATCG | TCAA |
TCAAATAGGCTGGCCA | TCAT | AGGCAGTTGTTATCTCCTGG | TCAA |
ATTGCCAAACGGCTGT | TCAT | GAGAAAGCTGAAGTTTGCAA | TCAA |
ATCCCCAGCATCACGA | TCAT | TGCAAACCCCTGCAGCCATC | TCAA |
TGCGGCTCTGTAGGAA | TCAT | GTTCAGAGCATCTGCAATTT | TCAA |
AACCGATGCAGCTTGA | TCAT | CCTAAAATTCTGGTCTTACG | TCAA |
DNA sequence
CTTTACCTCCGAGAGACCCCTTCCTTTAGGGAGGGGAGGGATAGGAGCGATAGTCTGTGACTGCCAAGTATAGTTGTGTTACTCACAGAATAATCGCTAT
AATGCGAGGCGTGGAAAAGGCTTTCAGTTACCGCTTCTACCCAACAACTGAGCAGGAATCCCTGCTTCGGAAAACATTGGGCTGTGTTCGGTTGGTTTAT
AATCGAGCGCTGGCAGCGAGAACAGAAGCCTGGTATGAACGAAAAGAGAGACTTGACTATGTTCAAACCTCTGCCTTGCTTACTCAGTGGAAGAAGCAAG
ATGACCTTCAGTTTTTGAATGAGGTTAGCTGTGTTCCCTTGCAGCAGGCATTGAGACATCTGCAATCTGCTTTCACTAACTTTTTTGCAGGTCGGGCAAA
ATATCCCAACTTCAAAAAGAAACGCAATGGCGGTAGCGCAGAATTCACCAAGTCTGCTTTTAGGTGGAAAGACGGAAAAGTATTCTTGGCAAAGTGCAAC
GAACCGCTGAATATTCCCTGGTCGAGACGGCTTCCAGATGGTGTTGAACCATCCACGGTGACCATCAGGCTTAACCCTGCTGGACAGTGGTACATCAGTC
TGAGGTTTGATGACCCCAGAGAGTTGACACTGCAGCCCGTCGACCCGTCGGTTGGTTTGGACGTAGGGATGAGCAGTCTCATTACCCTGAGTACAGGGGA
AAAGATTGCCAACCCCAAGCACTTTAACCGCTACTACAAACGACTCCGTAAGGCGCAGCGGTCTTTGAGTCGCAAACAAAAAGGCTCTCGCAATTGGGAT
AAGGCGCGGTTGAAAGTTGCCAAGATTCACCAGAAAATCTCTGATTCCAGAAAAGACCATTTGCACCAGTTGACGACTCGATTGATACGTGAAAACCAAA
CGATCATAATCGAGTCGTTGGCTGTGAAAAACATGGTCAAGAACCGTCAGCTTGCCCGATCCATCAGTGATGCTGGATGGGGCGAACTGGTACGGCAATT
GGAATACAAAGCCCAGTGGTATGGTCGGACACTGGTGAAGATTGACCGATGGTTTCCCAGTTCTAAACGCTGTGGACAGTGTGGTCACATTGTTGAGTGG
TTGCCATTGAGTGTCCGAGAATGGGACTGTCCTAAGTGTGGGGCGCACCATGACCGGGATATAAATGCCGCTGGGAATATTTTGGCCGTGGGACACACGG
TTACAGTCTGTGGAGCGGGTGTAAGACCTGATAGGCATACGTCTGGAGGGCAACTGCGAAGAAACAGAAAGTCTCAAAAGTGATTTTGGGAATCCCCCTG
CTTTAGCGGGGGGAGGATGTCAA
AATGCGAGGCGTGGAAAAGGCTTTCAGTTACCGCTTCTACCCAACAACTGAGCAGGAATCCCTGCTTCGGAAAACATTGGGCTGTGTTCGGTTGGTTTAT
AATCGAGCGCTGGCAGCGAGAACAGAAGCCTGGTATGAACGAAAAGAGAGACTTGACTATGTTCAAACCTCTGCCTTGCTTACTCAGTGGAAGAAGCAAG
ATGACCTTCAGTTTTTGAATGAGGTTAGCTGTGTTCCCTTGCAGCAGGCATTGAGACATCTGCAATCTGCTTTCACTAACTTTTTTGCAGGTCGGGCAAA
ATATCCCAACTTCAAAAAGAAACGCAATGGCGGTAGCGCAGAATTCACCAAGTCTGCTTTTAGGTGGAAAGACGGAAAAGTATTCTTGGCAAAGTGCAAC
GAACCGCTGAATATTCCCTGGTCGAGACGGCTTCCAGATGGTGTTGAACCATCCACGGTGACCATCAGGCTTAACCCTGCTGGACAGTGGTACATCAGTC
TGAGGTTTGATGACCCCAGAGAGTTGACACTGCAGCCCGTCGACCCGTCGGTTGGTTTGGACGTAGGGATGAGCAGTCTCATTACCCTGAGTACAGGGGA
AAAGATTGCCAACCCCAAGCACTTTAACCGCTACTACAAACGACTCCGTAAGGCGCAGCGGTCTTTGAGTCGCAAACAAAAAGGCTCTCGCAATTGGGAT
AAGGCGCGGTTGAAAGTTGCCAAGATTCACCAGAAAATCTCTGATTCCAGAAAAGACCATTTGCACCAGTTGACGACTCGATTGATACGTGAAAACCAAA
CGATCATAATCGAGTCGTTGGCTGTGAAAAACATGGTCAAGAACCGTCAGCTTGCCCGATCCATCAGTGATGCTGGATGGGGCGAACTGGTACGGCAATT
GGAATACAAAGCCCAGTGGTATGGTCGGACACTGGTGAAGATTGACCGATGGTTTCCCAGTTCTAAACGCTGTGGACAGTGTGGTCACATTGTTGAGTGG
TTGCCATTGAGTGTCCGAGAATGGGACTGTCCTAAGTGTGGGGCGCACCATGACCGGGATATAAATGCCGCTGGGAATATTTTGGCCGTGGGACACACGG
TTACAGTCTGTGGAGCGGGTGTAAGACCTGATAGGCATACGTCTGGAGGGCAACTGCGAAGAAACAGAAAGTCTCAAAAGTGATTTTGGGAATCCCCCTG
CTTTAGCGGGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1182 bp | 390 aa | 102 | 1283 | + | No |
AG : TnpB
ORF sequence :
VEKAFSYRFYPTTEQESLLRKTLGCVRLVYNRALAARTEAWYERKERLDYVQTSALLTQWKKQDDLQFLNEVSCVPLQQALRHLQSAFTNFFAGRAKYPN
FKKKRNGGSAEFTKSAFRWKDGKVFLAKCNEPLNIPWSRRLPDGVEPSTVTIRLNPAGQWYISLRFDDPRELTLQPVDPSVGLDVGMSSLITLSTGEKIA
NPKHFNRYYKRLRKAQRSLSRKQKGSRNWDKARLKVAKIHQKISDSRKDHLHQLTTRLIRENQTIIIESLAVKNMVKNRQLARSISDAGWGELVRQLEYK
AQWYGRTLVKIDRWFPSSKRCGQCGHIVEWLPLSVREWDCPKCGAHHDRDINAAGNILAVGHTVTVCGAGVRPDRHTSGGQLRRNRKSQK
FKKKRNGGSAEFTKSAFRWKDGKVFLAKCNEPLNIPWSRRLPDGVEPSTVTIRLNPAGQWYISLRFDDPRELTLQPVDPSVGLDVGMSSLITLSTGEKIA
NPKHFNRYYKRLRKAQRSLSRKQKGSRNWDKARLKVAKIHQKISDSRKDHLHQLTTRLIRENQTIIIESLAVKNMVKNRQLARSISDAGWGELVRQLEYK
AQWYGRTLVKIDRWFPSSKRCGQCGHIVEWLPLSVREWDCPKCGAHHDRDINAAGNILAVGHTVTVCGAGVRPDRHTSGGQLRRNRKSQK
Blast result :
Comments
ISTel3 is 72% aa similar to ISPa18.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.