ISTel3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s) ISEL1
Accession numberTranspositionOriginHost
NC_004113 ND Thermosynechococcus elongatus
Thermosynechococcus elongatus BP-1
DNA section
IS Length : 1323 bp

Ends


Left end : CTTTACCTCCGAGAGACCCCTTCCTTTAGGGAGGGGAGGGATAGGAGCGATAGTCTGTGACTGCCAAGTATAGTTGTGTTACTCACAGAATAATCGCTAT II struct. : Yes
Right end : AGACCTGATAGGCATACGTCTGGAGGGCAACTGCGAAGAAACAGAAAGTCTCAAAAGTGATTTTGGGAATCCCCCTGCTTTAGCGGGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGAGAGAATCATTCATTCATGAAGAGTTACTGACGCGGTTTCAA
GGCCGCGATCGCGCCATCATCGCAAAAAGCCCCATCGCAATCAA
CTTAATGAAGTAGATTTCATTGGGAACATCTAGAACCGACTCAA
CACGGGGCTTTGCTAATCATTGTGCCCAAGATAAACCCGATCAA
CAGACCCTCGGAACCGTTATCATGTACCGCGAGTCAGAACTCAA
CGCCATCACTCAATTCTCATTCAAGATAAAGCTTCTCTATTCAA
AATGAGCGATCGCCACTCATGACAACTCCGTACACCTAGGTCAa
GGTTGTGGTTGTTGCGTCATCGTTCCTGTGTCTTGTCCACTCAA
ATCAGGACAGGAGCCGTCATAGATGTAACCTCCTCGACTGTCAA
CAAGCGGGATCGCGAATCATCTGGCGAACTTGAAATTGACTCAA
GGCTGGCGATCGCCACTCATAGCCTACTTCTGAGAATCTCTCAA
GAATGAGGATGTGCATTCATCTTGACATAGGAAGGCTCTATCAA
ATTAGGGTTTGTAAAGTCATAAAACTCCACCTAAGATAAATCAA
ATGGATTATACCCATTTCATTGTGGGTACTCCGCAACCGCTCAA
GGCTAGGAGTCCACCGTCATAGTGTTGTCAAAAAGGGGTGTCAA
CTGGCGTCTTGACTATTCATTATTTGACTATTCATCATCGTCAA
TCAAATAGGCTGGCCATCATAGGCAGTTGTTATCTCCTGGTCAA
ATTGCCAAACGGCTGTTCATGAGAAAGCTGAAGTTTGCAATCAA
ATCCCCAGCATCACGATCATTGCAAACCCCTGCAGCCATCTCAA
TGCGGCTCTGTAGGAATCATGTTCAGAGCATCTGCAATTTTCAA
AACCGATGCAGCTTGATCATCCTAAAATTCTGGTCTTACGTCAA

DNA sequence

CTTTACCTCCGAGAGACCCCTTCCTTTAGGGAGGGGAGGGATAGGAGCGATAGTCTGTGACTGCCAAGTATAGTTGTGTTACTCACAGAATAATCGCTAT
AATGCGAGGCGTGGAAAAGGCTTTCAGTTACCGCTTCTACCCAACAACTGAGCAGGAATCCCTGCTTCGGAAAACATTGGGCTGTGTTCGGTTGGTTTAT
AATCGAGCGCTGGCAGCGAGAACAGAAGCCTGGTATGAACGAAAAGAGAGACTTGACTATGTTCAAACCTCTGCCTTGCTTACTCAGTGGAAGAAGCAAG
ATGACCTTCAGTTTTTGAATGAGGTTAGCTGTGTTCCCTTGCAGCAGGCATTGAGACATCTGCAATCTGCTTTCACTAACTTTTTTGCAGGTCGGGCAAA
ATATCCCAACTTCAAAAAGAAACGCAATGGCGGTAGCGCAGAATTCACCAAGTCTGCTTTTAGGTGGAAAGACGGAAAAGTATTCTTGGCAAAGTGCAAC
GAACCGCTGAATATTCCCTGGTCGAGACGGCTTCCAGATGGTGTTGAACCATCCACGGTGACCATCAGGCTTAACCCTGCTGGACAGTGGTACATCAGTC
TGAGGTTTGATGACCCCAGAGAGTTGACACTGCAGCCCGTCGACCCGTCGGTTGGTTTGGACGTAGGGATGAGCAGTCTCATTACCCTGAGTACAGGGGA
AAAGATTGCCAACCCCAAGCACTTTAACCGCTACTACAAACGACTCCGTAAGGCGCAGCGGTCTTTGAGTCGCAAACAAAAAGGCTCTCGCAATTGGGAT
AAGGCGCGGTTGAAAGTTGCCAAGATTCACCAGAAAATCTCTGATTCCAGAAAAGACCATTTGCACCAGTTGACGACTCGATTGATACGTGAAAACCAAA
CGATCATAATCGAGTCGTTGGCTGTGAAAAACATGGTCAAGAACCGTCAGCTTGCCCGATCCATCAGTGATGCTGGATGGGGCGAACTGGTACGGCAATT
GGAATACAAAGCCCAGTGGTATGGTCGGACACTGGTGAAGATTGACCGATGGTTTCCCAGTTCTAAACGCTGTGGACAGTGTGGTCACATTGTTGAGTGG
TTGCCATTGAGTGTCCGAGAATGGGACTGTCCTAAGTGTGGGGCGCACCATGACCGGGATATAAATGCCGCTGGGAATATTTTGGCCGTGGGACACACGG
TTACAGTCTGTGGAGCGGGTGTAAGACCTGATAGGCATACGTCTGGAGGGCAACTGCGAAGAAACAGAAAGTCTCAAAAGTGATTTTGGGAATCCCCCTG
CTTTAGCGGGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1182 bp390 aa1021283+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

VEKAFSYRFYPTTEQESLLRKTLGCVRLVYNRALAARTEAWYERKERLDYVQTSALLTQWKKQDDLQFLNEVSCVPLQQALRHLQSAFTNFFAGRAKYPN
FKKKRNGGSAEFTKSAFRWKDGKVFLAKCNEPLNIPWSRRLPDGVEPSTVTIRLNPAGQWYISLRFDDPRELTLQPVDPSVGLDVGMSSLITLSTGEKIA
NPKHFNRYYKRLRKAQRSLSRKQKGSRNWDKARLKVAKIHQKISDSRKDHLHQLTTRLIRENQTIIIESLAVKNMVKNRQLARSISDAGWGELVRQLEYK
AQWYGRTLVKIDRWFPSSKRCGQCGHIVEWLPLSVREWDCPKCGAHHDRDINAAGNILAVGHTVTVCGAGVRPDRHTSGGQLRRNRKSQK

 

Blast result :
Comments
ISTel3 is 72% aa similar to ISPa18.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.