ISHmu1
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 934 bp
Ends
IR Length : 14/16
IRL : GGGCGTGTTTAGACGCTAGTAAGAGCGGCTAAATGTCTAACTTACTAGGG
IRR : GGCCTTGTTTAGACGCGTGATTTCACGGTCATGAGTGGCTGACGCTGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTGAATTGT | GGAATGATG | TATATCCAGT | 9 |
GCATGCGTTC | TATTAGAGTA | 0 |
DNA sequence
GGGCGTGTTTAGACGCTAGTAAGAGCGGCTAAATGTCTAACTTACTAGGGAGTGAAGCGGGAAGACGAGTTTGTGTCCAGCAAACTCGCCCGCTTCACTG
ATCGGGTTGTCTCGCTTGCTCAAAAAGCCGTCGTCGGCGAACCAGATCCAGCGTACGAAGAAGGAGAAAACGGCTACGCAGATTGGGTGATCGTGGCGAT
TCACGGCCTCCGCGAGTATCTTGATCACACGTATCGGCGGTTGCTGGACGTGCTCCACGAGATGCATGGAATTGTCGCTAAACTCGACCTAGCGGTGGCT
GATCTGCCTGATTTCACGACCGTGTGTGCGCGCAAGCAGGATCTGGAAATGCGTATTTGGCGCGTCTTGCTGCGGCTGTCGGCGGAGTTGCACGACCTCG
GTGATGTTCAGGCAATTGACGCAACCGGCATGGATCGGATTGCTGCCAGCCAACACTACGCAAAACGGACGAACTACACGTTCGAGGCGGTGAAAACGAC
CCTTCTGAGTGACTGCAAGACTGGTGCGATCCTAGATATACATTGCTCGATGAAACAACCGCACGATTCCAAGATCGGCTGGCAGATGGTCAAACGCAAT
CTCGACAAACTGAATATTCTCACCGCCGACAAAGGCTACGACTGGTGGTTACTTCGCCAAAGACTGCGTGCAGAAGGCGTTAAACCGGTGATCAAGCACC
GCGAATTCGGCTGGCACGGCATCGCCAACAATTTCTTGCAAGATGATACGATCTACCATCAACGCTCGAACGCCGAATCCACGTTTTTCGCGCTGCGACG
CAAATACGGCGAGATCGTTCGGGCTCGAACCTGGTTCGGTCAGTTCCGCGAACTCGTTCTGAAATGTGCTGTCAGAAACATCGAACTCAGCGTCAGCCAC
TCATGACCGTGAAATCACGCGTCTAAACAAGGCC
ATCGGGTTGTCTCGCTTGCTCAAAAAGCCGTCGTCGGCGAACCAGATCCAGCGTACGAAGAAGGAGAAAACGGCTACGCAGATTGGGTGATCGTGGCGAT
TCACGGCCTCCGCGAGTATCTTGATCACACGTATCGGCGGTTGCTGGACGTGCTCCACGAGATGCATGGAATTGTCGCTAAACTCGACCTAGCGGTGGCT
GATCTGCCTGATTTCACGACCGTGTGTGCGCGCAAGCAGGATCTGGAAATGCGTATTTGGCGCGTCTTGCTGCGGCTGTCGGCGGAGTTGCACGACCTCG
GTGATGTTCAGGCAATTGACGCAACCGGCATGGATCGGATTGCTGCCAGCCAACACTACGCAAAACGGACGAACTACACGTTCGAGGCGGTGAAAACGAC
CCTTCTGAGTGACTGCAAGACTGGTGCGATCCTAGATATACATTGCTCGATGAAACAACCGCACGATTCCAAGATCGGCTGGCAGATGGTCAAACGCAAT
CTCGACAAACTGAATATTCTCACCGCCGACAAAGGCTACGACTGGTGGTTACTTCGCCAAAGACTGCGTGCAGAAGGCGTTAAACCGGTGATCAAGCACC
GCGAATTCGGCTGGCACGGCATCGCCAACAATTTCTTGCAAGATGATACGATCTACCATCAACGCTCGAACGCCGAATCCACGTTTTTCGCGCTGCGACG
CAAATACGGCGAGATCGTTCGGGCTCGAACCTGGTTCGGTCAGTTCCGCGAACTCGTTCTGAAATGTGCTGTCAGAAACATCGAACTCAGCGTCAGCCAC
TCATGACCGTGAAATCACGCGTCTAAACAAGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
855 bp | 284 aa | 52 | 906 | + | No |
Chemistry : DDE
ORF sequence :
MKREDEFVSSKLARFTDRVVSLAQKAVVGEPDPAYEEGENGYADWVIVAIHGLREYLDHTYRRLLDVLHEMHGIVAKLDLAVADLPDFTTVCARKQDLEM
RIWRVLLRLSAELHDLGDVQAIDATGMDRIAASQHYAKRTNYTFEAVKTTLLSDCKTGAILDIHCSMKQPHDSKIGWQMVKRNLDKLNILTADKGYDWWL
LRQRLRAEGVKPVIKHREFGWHGIANNFLQDDTIYHQRSNAESTFFALRRKYGEIVRARTWFGQFRELVLKCAVRNIELSVSHS
RIWRVLLRLSAELHDLGDVQAIDATGMDRIAASQHYAKRTNYTFEAVKTTLLSDCKTGAILDIHCSMKQPHDSKIGWQMVKRNLDKLNILTADKGYDWWL
LRQRLRAEGVKPVIKHREFGWHGIANNFLQDDTIYHQRSNAESTFFALRRKYGEIVRARTWFGQFRELVLKCAVRNIELSVSHS
Blast result :
Comments
ISHmu1 is 77% aa similar to ISHtu1.
References
1] ISfinder annotation (2010).
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277