ISHmu1

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 934 bp

Ends


IR Length : 14/16

IRL : GGGCGTGTTTAGACGCTAGTAAGAGCGGCTAAATGTCTAACTTACTAGGG
IRR : GGCCTTGTTTAGACGCGTGATTTCACGGTCATGAGTGGCTGACGCTGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTGAATTGTGGAATGATGTATATCCAGT9
GCATGCGTTCTATTAGAGTA0

DNA sequence

GGGCGTGTTTAGACGCTAGTAAGAGCGGCTAAATGTCTAACTTACTAGGGAGTGAAGCGGGAAGACGAGTTTGTGTCCAGCAAACTCGCCCGCTTCACTG
ATCGGGTTGTCTCGCTTGCTCAAAAAGCCGTCGTCGGCGAACCAGATCCAGCGTACGAAGAAGGAGAAAACGGCTACGCAGATTGGGTGATCGTGGCGAT
TCACGGCCTCCGCGAGTATCTTGATCACACGTATCGGCGGTTGCTGGACGTGCTCCACGAGATGCATGGAATTGTCGCTAAACTCGACCTAGCGGTGGCT
GATCTGCCTGATTTCACGACCGTGTGTGCGCGCAAGCAGGATCTGGAAATGCGTATTTGGCGCGTCTTGCTGCGGCTGTCGGCGGAGTTGCACGACCTCG
GTGATGTTCAGGCAATTGACGCAACCGGCATGGATCGGATTGCTGCCAGCCAACACTACGCAAAACGGACGAACTACACGTTCGAGGCGGTGAAAACGAC
CCTTCTGAGTGACTGCAAGACTGGTGCGATCCTAGATATACATTGCTCGATGAAACAACCGCACGATTCCAAGATCGGCTGGCAGATGGTCAAACGCAAT
CTCGACAAACTGAATATTCTCACCGCCGACAAAGGCTACGACTGGTGGTTACTTCGCCAAAGACTGCGTGCAGAAGGCGTTAAACCGGTGATCAAGCACC
GCGAATTCGGCTGGCACGGCATCGCCAACAATTTCTTGCAAGATGATACGATCTACCATCAACGCTCGAACGCCGAATCCACGTTTTTCGCGCTGCGACG
CAAATACGGCGAGATCGTTCGGGCTCGAACCTGGTTCGGTCAGTTCCGCGAACTCGTTCTGAAATGTGCTGTCAGAAACATCGAACTCAGCGTCAGCCAC
TCATGACCGTGAAATCACGCGTCTAAACAAGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
855 bp284 aa52906+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKREDEFVSSKLARFTDRVVSLAQKAVVGEPDPAYEEGENGYADWVIVAIHGLREYLDHTYRRLLDVLHEMHGIVAKLDLAVADLPDFTTVCARKQDLEM
RIWRVLLRLSAELHDLGDVQAIDATGMDRIAASQHYAKRTNYTFEAVKTTLLSDCKTGAILDIHCSMKQPHDSKIGWQMVKRNLDKLNILTADKGYDWWL
LRQRLRAEGVKPVIKHREFGWHGIANNFLQDDTIYHQRSNAESTFFALRRKYGEIVRARTWFGQFRELVLKCAVRNIELSVSHS

 

Blast result :
Comments
ISHmu1 is 77% aa similar to ISHtu1.
References
1] ISfinder annotation (2010).

2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277