ISHtu1
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013745 | ND | Haloterrigena turkmenica | Haloterrigena turkmenica DSM 5511 plasmid pHTUR02 |
DNA section
IS Length : 934 bp
Ends
IR Length : 15/16
IRL : GGCCGTGTTTAGACGCCGCTCAGTTGACGTCTCGACCGGGATTATGTGGA
IRR : GGCCTTGTTTAGACGCGTGAGATCAGCGGTATCAGAGCTTCACGGCTTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGCTGAATA | GACAGCGCG | TATTGGTCAC | 9 |
DNA sequence
GGCCGTGTTTAGACGCCGCTCAGTTGACGTCTCGACCGGGATTATGTGGAATTGAGCGAGGAAGCGGCGAGTATGCCATCTCAACTCGCCCGCTTCACCG
ACCGATGCGTCGATTTGTCCCAGAATGCTGTCATCGGCAAGCCAGCGTCGGCGATCAAGAAGGGTGACGGCGGCTACGCTGACTGGGTGATTATCTCGAT
CCACTGCCTCCGAGAGTACCTGAACCAACCATACCGTCGGTTGCTCGATATCCTGTACGAGATGCCGGGAATCGCGGCGAAACTCGGACTTTCTGTGGAT
CAGCTACCGGATTTCACCACCGTCTGTACGCGGAAACAAGATCTCAAAATGCGGATCTGGCGGGTGTTACTGCGGCTGTCTGTCTCGCTACACGAGCTCG
GCGATGTTCAGGCGATCGACGCGACCGGCTTCAAACGCCATCAAGCTAGCCGCCACTACGTCCTCCGCGTCGGCTACAACTTTGATGATATCAAGACGAC
AGCGCTCGTCGATTGCGATACTAGCGTCATCCTCGATATCCATTGCTCGATGAAACAGCCGCACGATACACACGTTGGACGACAGGTACTGATGAGAAAT
CTAGCACAGCTAACCACGATCACTGCTGACAAAAGTTACGACTGGGACGTGCTGCGGCACGAGCTCAGGGATATTGGCATCCGCCCGGTGATCAAACATC
GAGAGTTCTATGCACTTGACAAAGCGCACAACGCTCGCCACGACGAGAACGTCTATCACCGCCGCTCGATCGTCGAAGCGATCTTCTTCGCGCTGAAGCA
TCGATTCGGCGAGACGTTGCGGGCCAGAACGTGGTTTGGCCAGTTCAGAGAGCTCGTCCTAAAGGCTGCCGTCAGAAACATCGAGCAAGCCGTGAAGCTC
TGATACCGCTGATCTCACGCGTCTAAACAAGGCC
ACCGATGCGTCGATTTGTCCCAGAATGCTGTCATCGGCAAGCCAGCGTCGGCGATCAAGAAGGGTGACGGCGGCTACGCTGACTGGGTGATTATCTCGAT
CCACTGCCTCCGAGAGTACCTGAACCAACCATACCGTCGGTTGCTCGATATCCTGTACGAGATGCCGGGAATCGCGGCGAAACTCGGACTTTCTGTGGAT
CAGCTACCGGATTTCACCACCGTCTGTACGCGGAAACAAGATCTCAAAATGCGGATCTGGCGGGTGTTACTGCGGCTGTCTGTCTCGCTACACGAGCTCG
GCGATGTTCAGGCGATCGACGCGACCGGCTTCAAACGCCATCAAGCTAGCCGCCACTACGTCCTCCGCGTCGGCTACAACTTTGATGATATCAAGACGAC
AGCGCTCGTCGATTGCGATACTAGCGTCATCCTCGATATCCATTGCTCGATGAAACAGCCGCACGATACACACGTTGGACGACAGGTACTGATGAGAAAT
CTAGCACAGCTAACCACGATCACTGCTGACAAAAGTTACGACTGGGACGTGCTGCGGCACGAGCTCAGGGATATTGGCATCCGCCCGGTGATCAAACATC
GAGAGTTCTATGCACTTGACAAAGCGCACAACGCTCGCCACGACGAGAACGTCTATCACCGCCGCTCGATCGTCGAAGCGATCTTCTTCGCGCTGAAGCA
TCGATTCGGCGAGACGTTGCGGGCCAGAACGTGGTTTGGCCAGTTCAGAGAGCTCGTCCTAAAGGCTGCCGTCAGAAACATCGAGCAAGCCGTGAAGCTC
TGATACCGCTGATCTCACGCGTCTAAACAAGGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 831 bp | 276 aa | 73 | 903 | + | No |
Chemistry : DDE
ORF sequence :
MPSQLARFTDRCVDLSQNAVIGKPASAIKKGDGGYADWVIISIHCLREYLNQPYRRLLDILYEMPGIAAKLGLSVDQLPDFTTVCTRKQDLKMRIWRVLL
RLSVSLHELGDVQAIDATGFKRHQASRHYVLRVGYNFDDIKTTALVDCDTSVILDIHCSMKQPHDTHVGRQVLMRNLAQLTTITADKSYDWDVLRHELRD
IGIRPVIKHREFYALDKAHNARHDENVYHRRSIVEAIFFALKHRFGETLRARTWFGQFRELVLKAAVRNIEQAVKL
RLSVSLHELGDVQAIDATGFKRHQASRHYVLRVGYNFDDIKTTALVDCDTSVILDIHCSMKQPHDTHVGRQVLMRNLAQLTTITADKSYDWDVLRHELRD
IGIRPVIKHREFYALDKAHNARHDENVYHRRSIVEAIFFALKHRFGETLRARTWFGQFRELVLKAAVRNIEQAVKL
Blast result :
Comments
ISHtu1 is 66% aa similar to ISH9.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.