ISOt6

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM494475 ND Orientia tsutsugamushi
Orientia tsutsugamushi Boryong
DNA section
IS Length : 908 bp

Ends


IR Length : 15/17

IRL : AGACTTCTTTCGAAACTATACAATGATGTAAAATGGTGTTATAAAAATCT
IRR : AGGCCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTATAAATGCCAGAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTATCTCATTAATATCAATC0
AAAAAGAGATAATAGCATCATAA3
TTATTTAGACAATACATAGCATC3

DNA sequence

AGACTTCTTTCGAAACTATACAATGATGTAAAATGGTGTTATAAAAATCTGATTTGAAGTAATAATGAAATTAGATCAGATTAAAGAGTTAAAGGATGAA
AAATTTCGTCGATTAACAGGAGTAAGGAAGGGAACATTCTCAAAGATGGTGGATATTTTGAGGAAAGCTGATGGTGTTAAGAAATCAAAAGGAGGGCGTA
AAAATAAGCTCAATTTGGAGGAACAGTTATTGATGGCCTTAGAATACCTTAGAGAATACCGTACTTATTTTCATATAGGTCAGAACTATGGGATTAGTGA
AAGTTCAGCATATAAAGCTGTAAAATGGGTAGAAGACACCTTAGTTAAACACCCAAACTTTGCTCTTCCAGGTCGTAAAGCTCTAATGAATAGCGATATG
AATTATGAAGTAGTCTTGATTGATGCTACTGAGAGTCCAATAGAAAGACCCAAAAAAAAACAAAAATTCTATTATTCAGGAAAGAAGAAAAGGCATACAC
TAAAGACTCAAATAGTGGTAGACAAGAAAACACACCAAGTAATATGTACAGATTTTTCTAACGGTAAAAAACATGACTTTAGATTATTTAAGGAATCCAA
AATTCTTATCCATCCTAAGATTAAAGCGATTACTGATACAGGATATCAAGGTATACAAAAAATTCACAATAATTCTGCATTACCAAAGAAGAAAAGCAAG
AAAAATCCTTTAACTAAAAATGATAAAAAGAATAATCGTAGGTTAGCAGGAGAAAGAGTTGTCAATGAAAACTTTATTGGTATGCTAAAACGGTTCAAAA
TTATTGCTGACAAATATCGAAATAGACGTAAAAGATTTGGTCTTAGATTTAATTTGATCTCTGGCATTTATAATTTTGAACTACCTTAACCAGTTTCGAA
AGAGGCCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa65889+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKLDQIKELKDEKFRRLTGVRKGTFSKMVDILRKADGVKKSKGGRKNKLNLEEQLLMALEYLREYRTYFHIGQNYGISESSAYKAVKWVEDTLVKHPNFA
LPGRKALMNSDMNYEVVLIDATESPIERPKKKQKFYYSGKKKRHTLKTQIVVDKKTHQVICTDFSNGKKHDFRLFKESKILIHPKIKAITDTGYQGIQKI
HNNSALPKKKSKKNPLTKNDKKNNRRLAGERVVNENFIGMLKRFKIIADKYRNRRKRFGLRFNLISGIYNFELP

 

Blast result :
Comments
ISOt6 is 87% aa similar to ISCaa2.
References
1] ISfinder annotation (2010).

2] Cho,N.H., Kim,H.R., Lee,J.H., Kim,S.Y., Kim,J., Cha,S., Kim,S.Y., Darby,A.C., Fuxelius,H.H., Yin,J., Kim,J.H., Kim,J., Lee,S.J., Koh,Y.S., Jang,W.J., Park,K.H., Andersson,S.G., Choi,M.S. and Kim,I.S. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (19), 7981-7986

3]Cho,N.H. (2007) Direct submission GenBank.