ISLpn10

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR628336 ND Legionella pneumophila
Legionella pneumophila Paris
DNA section
IS Length : 865 bp

Ends


IR Length : 22

IRL : GGTTCTGTGAACGAAATTTTTAATTAATTGAAAAGAAGGCAGTTTTATAG
IRR : GGTTCTGTGAACGAAATTTTTAGCGCATCCAAATGAGCGCTCCGGCCAAA

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGTACTCCTAGTAAGCAAGA2
GGTAATACTCTAGGTCTTTTTA2

DNA sequence

GGTTCTGTGAACGAAATTTTTAATTAATTGAAAAGAAGGCAGTTTTATAGTGGAATTCGATTGACGATCGTAAAAAACACTAATGGAACTGCCAGAATGC
ATCATAACATATCAGAAGAATTGTGGAGTAAAATCTATTCTTACCTGCGTGGCCTGAAGGGTCTGCATGTCAAAAATGAAGCGAGTTTACGCCGCTTCAT
TGAAGGAGTTTGGTATGTATTACGTACCGGATGCCAATGGCGACTGCTTCCGTACTATTATGGTCATTGGCGTCAGATTCATCGACGTTATAAAGTGTGG
TCTGACCGTGGCATCTGGTCTGAGTTAATGTCAGTTGTCAGTGATGTTGATATCCAAACGATGATGATCGATGGAACTATTGTACGTGCTCACGCTTGCG
CCTCGGGTTATGTCAAGGATGGAAATGAGACTCAAGCATTGGGGCGTAGCAAAGGTGGTTTTACCACTAAAATTCACGCTTTGGTAGATGGGTTGGGCAA
TCCGATTAAATTTATTCTGACAGGAGGACACCGCAATGATATTACTCAAGCAGCAGAGCTACTCAAGGAACAACACGACACAATAGTCCTTGCTGATAAG
GGATATGACTCTCAAGAACTCATTGATACGCTACACCATCAGCGCTGCTCTCCAGTCATTCCATCAAGAAAAAACTCTAAATACCCCAGAAAAATAGACA
AACAACTTTATAAAGAGCGTTTTCTGATCGAGGCTTTTTTTTCTAAATTGAAGCATTTCCGCAGAATTTTTTCTCGTTTTGATAAAACCACTTCCGCTTT
TTCTGGGTTTTTGCATTTGGCCGGAGCGCTCATTTGGATGCGCTAAAAATTTCGTTCACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
750 bp249 aa97846+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHHNISEELWSKIYSYLRGLKGLHVKNEASLRRFIEGVWYVLRTGCQWRLLPYYYGHWRQIHRRYKVWSDRGIWSELMSVVSDVDIQTMMIDGTIVRAHA
CASGYVKDGNETQALGRSKGGFTTKIHALVDGLGNPIKFILTGGHRNDITQAAELLKEQHDTIVLADKGYDSQELIDTLHHQRCSPVIPSRKNSKYPRKI
DKQLYKERFLIEAFFSKLKHFRRIFSRFDKTTSAFSGFLHLAGALIWMR

 

Blast result :
Comments
Number of copy in Legionella pneumophila str Paris is 2.
ISLpn10 is 67% aa similar to ISFtu2.
References
1] Cazalet et al., (1998) Nat Genet. Nov;36(11):1165-73.