ISLpn10
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR628336 | ND | Legionella pneumophila | Legionella pneumophila Paris |
DNA section
IS Length : 865 bp
Ends
IR Length : 22
IRL : GGTTCTGTGAACGAAATTTTTAATTAATTGAAAAGAAGGCAGTTTTATAG
IRR : GGTTCTGTGAACGAAATTTTTAGCGCATCCAAATGAGCGCTCCGGCCAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAGTACTCC | TA | GTAAGCAAGA | 2 |
GGTAATACTC | TA | GGTCTTTTTA | 2 |
DNA sequence
GGTTCTGTGAACGAAATTTTTAATTAATTGAAAAGAAGGCAGTTTTATAGTGGAATTCGATTGACGATCGTAAAAAACACTAATGGAACTGCCAGAATGC
ATCATAACATATCAGAAGAATTGTGGAGTAAAATCTATTCTTACCTGCGTGGCCTGAAGGGTCTGCATGTCAAAAATGAAGCGAGTTTACGCCGCTTCAT
TGAAGGAGTTTGGTATGTATTACGTACCGGATGCCAATGGCGACTGCTTCCGTACTATTATGGTCATTGGCGTCAGATTCATCGACGTTATAAAGTGTGG
TCTGACCGTGGCATCTGGTCTGAGTTAATGTCAGTTGTCAGTGATGTTGATATCCAAACGATGATGATCGATGGAACTATTGTACGTGCTCACGCTTGCG
CCTCGGGTTATGTCAAGGATGGAAATGAGACTCAAGCATTGGGGCGTAGCAAAGGTGGTTTTACCACTAAAATTCACGCTTTGGTAGATGGGTTGGGCAA
TCCGATTAAATTTATTCTGACAGGAGGACACCGCAATGATATTACTCAAGCAGCAGAGCTACTCAAGGAACAACACGACACAATAGTCCTTGCTGATAAG
GGATATGACTCTCAAGAACTCATTGATACGCTACACCATCAGCGCTGCTCTCCAGTCATTCCATCAAGAAAAAACTCTAAATACCCCAGAAAAATAGACA
AACAACTTTATAAAGAGCGTTTTCTGATCGAGGCTTTTTTTTCTAAATTGAAGCATTTCCGCAGAATTTTTTCTCGTTTTGATAAAACCACTTCCGCTTT
TTCTGGGTTTTTGCATTTGGCCGGAGCGCTCATTTGGATGCGCTAAAAATTTCGTTCACAGAACC
ATCATAACATATCAGAAGAATTGTGGAGTAAAATCTATTCTTACCTGCGTGGCCTGAAGGGTCTGCATGTCAAAAATGAAGCGAGTTTACGCCGCTTCAT
TGAAGGAGTTTGGTATGTATTACGTACCGGATGCCAATGGCGACTGCTTCCGTACTATTATGGTCATTGGCGTCAGATTCATCGACGTTATAAAGTGTGG
TCTGACCGTGGCATCTGGTCTGAGTTAATGTCAGTTGTCAGTGATGTTGATATCCAAACGATGATGATCGATGGAACTATTGTACGTGCTCACGCTTGCG
CCTCGGGTTATGTCAAGGATGGAAATGAGACTCAAGCATTGGGGCGTAGCAAAGGTGGTTTTACCACTAAAATTCACGCTTTGGTAGATGGGTTGGGCAA
TCCGATTAAATTTATTCTGACAGGAGGACACCGCAATGATATTACTCAAGCAGCAGAGCTACTCAAGGAACAACACGACACAATAGTCCTTGCTGATAAG
GGATATGACTCTCAAGAACTCATTGATACGCTACACCATCAGCGCTGCTCTCCAGTCATTCCATCAAGAAAAAACTCTAAATACCCCAGAAAAATAGACA
AACAACTTTATAAAGAGCGTTTTCTGATCGAGGCTTTTTTTTCTAAATTGAAGCATTTCCGCAGAATTTTTTCTCGTTTTGATAAAACCACTTCCGCTTT
TTCTGGGTTTTTGCATTTGGCCGGAGCGCTCATTTGGATGCGCTAAAAATTTCGTTCACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 97 | 846 | + | No |
Chemistry : DDE
ORF sequence :
MHHNISEELWSKIYSYLRGLKGLHVKNEASLRRFIEGVWYVLRTGCQWRLLPYYYGHWRQIHRRYKVWSDRGIWSELMSVVSDVDIQTMMIDGTIVRAHA
CASGYVKDGNETQALGRSKGGFTTKIHALVDGLGNPIKFILTGGHRNDITQAAELLKEQHDTIVLADKGYDSQELIDTLHHQRCSPVIPSRKNSKYPRKI
DKQLYKERFLIEAFFSKLKHFRRIFSRFDKTTSAFSGFLHLAGALIWMR
CASGYVKDGNETQALGRSKGGFTTKIHALVDGLGNPIKFILTGGHRNDITQAAELLKEQHDTIVLADKGYDSQELIDTLHHQRCSPVIPSRKNSKYPRKI
DKQLYKERFLIEAFFSKLKHFRRIFSRFDKTTSAFSGFLHLAGALIWMR
Blast result :
Comments
Number of copy in Legionella pneumophila str Paris is 2.
ISLpn10 is 67% aa similar to ISFtu2.
ISLpn10 is 67% aa similar to ISFtu2.
References
1] Cazalet et al., (1998) Nat Genet. Nov;36(11):1165-73.