ISBuce2

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF169302 ND Burkholderia cepacia
Burkholderia cepacia R34
DNA section
IS Length : 1345 bp

Ends


IR Length : 18/22

IRL : CAGGGTGCTGAAATACCTCTCCCAGTCGGCGCGCGACAGCCCTCAAGCAT
IRR : CAGGATGCGGAAATACTCCCCTCCAAAGCGAGTCTTCCTCTTCGTCGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TCGAACGCGCCTAGTAGGCCGATG4

DNA sequence

CAGGGTGCTGAAATACCTCTCCCAGTCGGCGCGCGACAGCCCTCAAGCATTGGAAGTTGACACCACCGACAGTTGCAACCCAAGACCCCAGACGATGCGC
GGAGCCGATACCTTCACCGAAAGTTTGTTCACGATGCGCCGCCTGGAGGACTTCGTACCCGCCAATCATCCGCTGCGTCCCATCCGCGCGATGGTCAATG
AAGCGCTGCTGAAGATGGATGGCCTGTTCGCCGGCATGTACGAGGCCGACATCAAGGGCGGGCGTCCCAGCATCGCACCAGAGAAGCTGCTGCGCGCGAT
GCTGCTGCAGATCTTCTTCAGCGTTCGCTCGGAGCGCCAGCTCATGGAGCAGACCCAGTACAACCTCTTGTATCGCTGGTTCATCGGCTTGGCCATGGAC
GATGCGGTCTGGGTTCCGAGCGTCTTCACCAAGAACCGCGAACGCCTGATCGAGCATGACGCCATCATCGAACTGTTCAACCACATCGTCGAAACTGCTG
GTCGCAAAGGCTGGCTGTCGGGCGAACACTTTAGCGTCGATGGCACCCTCATCCAGGCATGGGCCAGCCACAGGAGCTTCGTGCGCAAGGATGGCGGCAA
CGATGATGATTCGGGCAACAACACGACGGGCAGCACCAGCTTCAAAGGCCAGACCCGCAGCAACGACACTCACGCCTCGCGTACCGATGGCGATGCGCGG
CTGTACCGCAAGGGCAAGACCGCCAGCGAGTTGCGCTACATGGGGCATACCCTCTCGGACAACCGACATGGCCTGATTGCCAACGCGATGGTCACGCAGG
CCGACGGCTTTGCCGAACGCGAAGCGGCCAAGGTCATGATCAAGGATGCACGTCAAGCAGCCGCGAGCCCGGACGCCGAGGTCACGCTCGGTGCGGACAA
GGGCTACGACGCGCAGGAGTTCGTCCAGGCATGCCAGGACATGGGCGTGATACCGCACGTGGCGCAGAACACTTCTGGGCGGCGCTCCGCGGTGCTCGAT
GCCATCGCTGCGAGCGAGGGCTATGCGCTATCGCAGCGTAAACGCAAGCTCATCGAGCAGGGCTTCGGCTGGGCCAAGACGGTGGGTGGAATTCGTCAGG
TGATGGTGCGTGGACTCAAGCGCGTGGACCACCTGTTCGTGCTGACGATGACGGCGTACAACTTGACGCGCATGCGCTCGTTGGGGCAAATCCGTCCGCA
GCAGTTCTGAGGCAGTCAGAGACTCGCAAAACACCTCAAATCAGCGCAAAACGACTCCCGAAAGCGCTGCTGACTGCACCATGTGAAAAGTGAGTCTTCG
ACGAAGAGGAAGACTCGCTTTGGAGGGGAGTATTTCCGCATCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1116 bp371 aa951210+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGADTFTESLFTMRRLEDFVPANHPLRPIRAMVNEALLKMDGLFAGMYEADIKGGRPSIAPEKLLRAMLLQIFFSVRSERQLMEQTQYNLLYRWFIGLA
MDDAVWVPSVFTKNRERLIEHDAIIELFNHIVETAGRKGWLSGEHFSVDGTLIQAWASHRSFVRKDGGNDDDSGNNTTGSTSFKGQTRSNDTHASRTDGD
ARLYRKGKTASELRYMGHTLSDNRHGLIANAMVTQADGFAEREAAKVMIKDARQAAASPDAEVTLGADKGYDAQEFVQACQDMGVIPHVAQNTSGRRSAV
LDAIAASEGYALSQRKRKLIEQGFGWAKTVGGIRQVMVRGLKRVDHLFVLTMTAYNLTRMRSLGQIRPQQF

 

Blast result :
Comments
ISBuce2 is 85% aa similar to ISRme1.
References
1] ISfinder annotation (2010)
2] Johnson,G.R., Jain,R.K. and Spain,J.C. (2000) Arch. Microbiol. 173 (2), 86-90