ISBuce2
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF169302 | ND | Burkholderia cepacia | Burkholderia cepacia R34 |
DNA section
IS Length : 1345 bp
Ends
IR Length : 18/22
IRL : CAGGGTGCTGAAATACCTCTCCCAGTCGGCGCGCGACAGCCCTCAAGCAT
IRR : CAGGATGCGGAAATACTCCCCTCCAAAGCGAGTCTTCCTCTTCGTCGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGAACGCGC | CTAG | TAGGCCGATG | 4 |
DNA sequence
CAGGGTGCTGAAATACCTCTCCCAGTCGGCGCGCGACAGCCCTCAAGCATTGGAAGTTGACACCACCGACAGTTGCAACCCAAGACCCCAGACGATGCGC
GGAGCCGATACCTTCACCGAAAGTTTGTTCACGATGCGCCGCCTGGAGGACTTCGTACCCGCCAATCATCCGCTGCGTCCCATCCGCGCGATGGTCAATG
AAGCGCTGCTGAAGATGGATGGCCTGTTCGCCGGCATGTACGAGGCCGACATCAAGGGCGGGCGTCCCAGCATCGCACCAGAGAAGCTGCTGCGCGCGAT
GCTGCTGCAGATCTTCTTCAGCGTTCGCTCGGAGCGCCAGCTCATGGAGCAGACCCAGTACAACCTCTTGTATCGCTGGTTCATCGGCTTGGCCATGGAC
GATGCGGTCTGGGTTCCGAGCGTCTTCACCAAGAACCGCGAACGCCTGATCGAGCATGACGCCATCATCGAACTGTTCAACCACATCGTCGAAACTGCTG
GTCGCAAAGGCTGGCTGTCGGGCGAACACTTTAGCGTCGATGGCACCCTCATCCAGGCATGGGCCAGCCACAGGAGCTTCGTGCGCAAGGATGGCGGCAA
CGATGATGATTCGGGCAACAACACGACGGGCAGCACCAGCTTCAAAGGCCAGACCCGCAGCAACGACACTCACGCCTCGCGTACCGATGGCGATGCGCGG
CTGTACCGCAAGGGCAAGACCGCCAGCGAGTTGCGCTACATGGGGCATACCCTCTCGGACAACCGACATGGCCTGATTGCCAACGCGATGGTCACGCAGG
CCGACGGCTTTGCCGAACGCGAAGCGGCCAAGGTCATGATCAAGGATGCACGTCAAGCAGCCGCGAGCCCGGACGCCGAGGTCACGCTCGGTGCGGACAA
GGGCTACGACGCGCAGGAGTTCGTCCAGGCATGCCAGGACATGGGCGTGATACCGCACGTGGCGCAGAACACTTCTGGGCGGCGCTCCGCGGTGCTCGAT
GCCATCGCTGCGAGCGAGGGCTATGCGCTATCGCAGCGTAAACGCAAGCTCATCGAGCAGGGCTTCGGCTGGGCCAAGACGGTGGGTGGAATTCGTCAGG
TGATGGTGCGTGGACTCAAGCGCGTGGACCACCTGTTCGTGCTGACGATGACGGCGTACAACTTGACGCGCATGCGCTCGTTGGGGCAAATCCGTCCGCA
GCAGTTCTGAGGCAGTCAGAGACTCGCAAAACACCTCAAATCAGCGCAAAACGACTCCCGAAAGCGCTGCTGACTGCACCATGTGAAAAGTGAGTCTTCG
ACGAAGAGGAAGACTCGCTTTGGAGGGGAGTATTTCCGCATCCTG
GGAGCCGATACCTTCACCGAAAGTTTGTTCACGATGCGCCGCCTGGAGGACTTCGTACCCGCCAATCATCCGCTGCGTCCCATCCGCGCGATGGTCAATG
AAGCGCTGCTGAAGATGGATGGCCTGTTCGCCGGCATGTACGAGGCCGACATCAAGGGCGGGCGTCCCAGCATCGCACCAGAGAAGCTGCTGCGCGCGAT
GCTGCTGCAGATCTTCTTCAGCGTTCGCTCGGAGCGCCAGCTCATGGAGCAGACCCAGTACAACCTCTTGTATCGCTGGTTCATCGGCTTGGCCATGGAC
GATGCGGTCTGGGTTCCGAGCGTCTTCACCAAGAACCGCGAACGCCTGATCGAGCATGACGCCATCATCGAACTGTTCAACCACATCGTCGAAACTGCTG
GTCGCAAAGGCTGGCTGTCGGGCGAACACTTTAGCGTCGATGGCACCCTCATCCAGGCATGGGCCAGCCACAGGAGCTTCGTGCGCAAGGATGGCGGCAA
CGATGATGATTCGGGCAACAACACGACGGGCAGCACCAGCTTCAAAGGCCAGACCCGCAGCAACGACACTCACGCCTCGCGTACCGATGGCGATGCGCGG
CTGTACCGCAAGGGCAAGACCGCCAGCGAGTTGCGCTACATGGGGCATACCCTCTCGGACAACCGACATGGCCTGATTGCCAACGCGATGGTCACGCAGG
CCGACGGCTTTGCCGAACGCGAAGCGGCCAAGGTCATGATCAAGGATGCACGTCAAGCAGCCGCGAGCCCGGACGCCGAGGTCACGCTCGGTGCGGACAA
GGGCTACGACGCGCAGGAGTTCGTCCAGGCATGCCAGGACATGGGCGTGATACCGCACGTGGCGCAGAACACTTCTGGGCGGCGCTCCGCGGTGCTCGAT
GCCATCGCTGCGAGCGAGGGCTATGCGCTATCGCAGCGTAAACGCAAGCTCATCGAGCAGGGCTTCGGCTGGGCCAAGACGGTGGGTGGAATTCGTCAGG
TGATGGTGCGTGGACTCAAGCGCGTGGACCACCTGTTCGTGCTGACGATGACGGCGTACAACTTGACGCGCATGCGCTCGTTGGGGCAAATCCGTCCGCA
GCAGTTCTGAGGCAGTCAGAGACTCGCAAAACACCTCAAATCAGCGCAAAACGACTCCCGAAAGCGCTGCTGACTGCACCATGTGAAAAGTGAGTCTTCG
ACGAAGAGGAAGACTCGCTTTGGAGGGGAGTATTTCCGCATCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1116 bp | 371 aa | 95 | 1210 | + | No |
Chemistry : DDE
ORF sequence :
MRGADTFTESLFTMRRLEDFVPANHPLRPIRAMVNEALLKMDGLFAGMYEADIKGGRPSIAPEKLLRAMLLQIFFSVRSERQLMEQTQYNLLYRWFIGLA
MDDAVWVPSVFTKNRERLIEHDAIIELFNHIVETAGRKGWLSGEHFSVDGTLIQAWASHRSFVRKDGGNDDDSGNNTTGSTSFKGQTRSNDTHASRTDGD
ARLYRKGKTASELRYMGHTLSDNRHGLIANAMVTQADGFAEREAAKVMIKDARQAAASPDAEVTLGADKGYDAQEFVQACQDMGVIPHVAQNTSGRRSAV
LDAIAASEGYALSQRKRKLIEQGFGWAKTVGGIRQVMVRGLKRVDHLFVLTMTAYNLTRMRSLGQIRPQQF
MDDAVWVPSVFTKNRERLIEHDAIIELFNHIVETAGRKGWLSGEHFSVDGTLIQAWASHRSFVRKDGGNDDDSGNNTTGSTSFKGQTRSNDTHASRTDGD
ARLYRKGKTASELRYMGHTLSDNRHGLIANAMVTQADGFAEREAAKVMIKDARQAAASPDAEVTLGADKGYDAQEFVQACQDMGVIPHVAQNTSGRRSAV
LDAIAASEGYALSQRKRKLIEQGFGWAKTVGGIRQVMVRGLKRVDHLFVLTMTAYNLTRMRSLGQIRPQQF
Blast result :
Comments
ISBuce2 is 85% aa similar to ISRme1.
References
1] ISfinder annotation (2010)
2] Johnson,G.R., Jain,R.K. and Spain,J.C. (2000) Arch. Microbiol. 173 (2), 86-90
2] Johnson,G.R., Jain,R.K. and Spain,J.C. (2000) Arch. Microbiol. 173 (2), 86-90