ISCpo1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Candidatus Poribacteria | Candidatus Poribacteria sp. WGA-A3 |
DNA section
IS Length : 1918 bp
Ends
IR Length : 12/15
IRL : GTGCTTGCCCGAAAATATAACTCTTGGTTGGTTTAGCGTGTTTCTATAGG
IRR : GTGTCTGCCAGAAAACACCTATTTCGGCTGAGTTAAGGGCGTCATGGCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTAACTTGA | TAGATA | AGGTTCGTGT | 6 |
DNA sequence
GTGCTTGCCCGAAAATATAACTCTTGGTTGGTTTAGCGTGTTTCTATAGGGGTTTTTGGTGATTTTTGGCCGTATTTCGGCCCATATGGCCTGTTTTTGG
CGTCTGGGGGCCCTCTTAACCTCGGAGCTTATTCTGGCGAATGTTGCGCTGCATCTGGGTAATTCGGGGATGATTTGGGCGTAAATCCCCTGATTTGCCG
TAAATTGGGGGATTATTCGCACCATTCATCTCCTATCCATAATGCGTAAGGTGTACGATTCACAGTACGATCTCTGGAAAACCCAGATTGCTGATATTGA
GATTGATCCCAAGGATCGGGACGACATTCCTGCGGTGCTGATGGGGCTGCAGGCGTTGTACGTTGACGCAGAAAATCGGGCAAAAATCTTTGAGATTCTC
GAAAGGCATGTGCGGCCTGAGGTCAGTCATCGGCACGGTCGTCCGGGCATGGATCTGTGGCGTATTTTTGTTTTGGCCGTGGTAAAGATGGCCCTCAACT
GTGATTTTGATCGTCTGACAAATCTGGCGAACCATCATCAGACTTTACGCCAGATGCTGGGTCATGCGGAATATGGTGATCGGACGAAGTATCAGCATCA
GACGGTGATTGATAATGTTAGCCTGTTGACCGAGGAGGCTTTGCAGGAGATCAACAAGGTCGTTGTGGAATGCGGGCATGCACATCTGGACGTAGAGGCG
GAGACCCCTCTGGAGTGTCGTGTGGATTCGGCGGTAACGAAGACCAACGTGCATTGGCCCACGGATGTGAACCTGCTCCGGGACGCGATGGACAGTCTGC
TCCGCACGTTGCATCGCACCTGTGCGGCGCACGAGGTTAAGGGCTGGCGTAAGTGCCAGTATTGGTTGAGGGAAGTACGGAAGGCGTTCAATCGGGTGCG
CGATTCCCGTCGGTGGCGCAGTGAGCGCAAGGTTAAGGCCTATCTGGGATTGTGCATTCAGCTTGTTGTGCGGGCCACGGTGACCCTTGAAGAGCTACGG
AAGCGTGAGATTGCCACGGATAAGATCGCCCACTATTTGGCGCATGCGCTGCGTCAAATTGATCAGATTGAGCGTCGATTGATCAAAAACGAGACGATCC
CCCACCATGAGAAGGTATTTTCGGTCCATGAGCCGCATACGCGCTGGATCAACAAAGGCAAAGCGGGCGTGCTTGTGGAGTTGGGGTTGCCGATTTGTTT
TATGGAAGATCAGTATCAGTTCATCCTGCATCACGAAGTGTTGCGTGAAGGGGTGGATTCGGACATGATTGTTCAGTTCATCCAGGCGGCGCAGGCGCTG
TATCCCTCCATTGTCTCGTGCAGCATGGATAAGGGCTACCACTCGCCGGGTAACCGTGTGGCGTTGGATGGTCTGCTGGAGTTGAATGTGCTGCCGAAGA
AGGGCAGAAAGTCACAGGCAGAACAGGCACGGGAGTCTGCGCCGGCGTTCGCGGCGGCGCGCCGGAAGCATCCAGGGATTGAGTCGGCGATCAACAATCT
GAATCATCGCGGACTGGATCGGATACGGACGCACGGCGAGGAGGGGTTTGTTCGGACGGTCGCACTGGGGGTCGTGGCCGCGAATGTACACCGGTTGGGT
CAGATCGTTAAGAAGCAGCGGAGGCAATACGACCGGTGGCATAAGGCCCGCCGAAAGGCGGCGTGAAGCCCCCCTGGTCGTACGGATACGATCAAACAAG
GCGTGCAGAACAACAGAACTGGCCCGAGGTATGTCCGCTGGGCAGATCAGATCCCGAAAAATTTGCGGAAACCGGCGTAAATCCGACTTTTAGCAGAGAC
GCTAACCTAAATACGACGTGACCAAGCCACCACCCCCTCGAATTGATACCTCAGACGTACGCAAACCAGGGCCATGACGCCCTTAACTCAGCCGAAATAG
GTGTTTTCTGGCAGACAC
CGTCTGGGGGCCCTCTTAACCTCGGAGCTTATTCTGGCGAATGTTGCGCTGCATCTGGGTAATTCGGGGATGATTTGGGCGTAAATCCCCTGATTTGCCG
TAAATTGGGGGATTATTCGCACCATTCATCTCCTATCCATAATGCGTAAGGTGTACGATTCACAGTACGATCTCTGGAAAACCCAGATTGCTGATATTGA
GATTGATCCCAAGGATCGGGACGACATTCCTGCGGTGCTGATGGGGCTGCAGGCGTTGTACGTTGACGCAGAAAATCGGGCAAAAATCTTTGAGATTCTC
GAAAGGCATGTGCGGCCTGAGGTCAGTCATCGGCACGGTCGTCCGGGCATGGATCTGTGGCGTATTTTTGTTTTGGCCGTGGTAAAGATGGCCCTCAACT
GTGATTTTGATCGTCTGACAAATCTGGCGAACCATCATCAGACTTTACGCCAGATGCTGGGTCATGCGGAATATGGTGATCGGACGAAGTATCAGCATCA
GACGGTGATTGATAATGTTAGCCTGTTGACCGAGGAGGCTTTGCAGGAGATCAACAAGGTCGTTGTGGAATGCGGGCATGCACATCTGGACGTAGAGGCG
GAGACCCCTCTGGAGTGTCGTGTGGATTCGGCGGTAACGAAGACCAACGTGCATTGGCCCACGGATGTGAACCTGCTCCGGGACGCGATGGACAGTCTGC
TCCGCACGTTGCATCGCACCTGTGCGGCGCACGAGGTTAAGGGCTGGCGTAAGTGCCAGTATTGGTTGAGGGAAGTACGGAAGGCGTTCAATCGGGTGCG
CGATTCCCGTCGGTGGCGCAGTGAGCGCAAGGTTAAGGCCTATCTGGGATTGTGCATTCAGCTTGTTGTGCGGGCCACGGTGACCCTTGAAGAGCTACGG
AAGCGTGAGATTGCCACGGATAAGATCGCCCACTATTTGGCGCATGCGCTGCGTCAAATTGATCAGATTGAGCGTCGATTGATCAAAAACGAGACGATCC
CCCACCATGAGAAGGTATTTTCGGTCCATGAGCCGCATACGCGCTGGATCAACAAAGGCAAAGCGGGCGTGCTTGTGGAGTTGGGGTTGCCGATTTGTTT
TATGGAAGATCAGTATCAGTTCATCCTGCATCACGAAGTGTTGCGTGAAGGGGTGGATTCGGACATGATTGTTCAGTTCATCCAGGCGGCGCAGGCGCTG
TATCCCTCCATTGTCTCGTGCAGCATGGATAAGGGCTACCACTCGCCGGGTAACCGTGTGGCGTTGGATGGTCTGCTGGAGTTGAATGTGCTGCCGAAGA
AGGGCAGAAAGTCACAGGCAGAACAGGCACGGGAGTCTGCGCCGGCGTTCGCGGCGGCGCGCCGGAAGCATCCAGGGATTGAGTCGGCGATCAACAATCT
GAATCATCGCGGACTGGATCGGATACGGACGCACGGCGAGGAGGGGTTTGTTCGGACGGTCGCACTGGGGGTCGTGGCCGCGAATGTACACCGGTTGGGT
CAGATCGTTAAGAAGCAGCGGAGGCAATACGACCGGTGGCATAAGGCCCGCCGAAAGGCGGCGTGAAGCCCCCCTGGTCGTACGGATACGATCAAACAAG
GCGTGCAGAACAACAGAACTGGCCCGAGGTATGTCCGCTGGGCAGATCAGATCCCGAAAAATTTGCGGAAACCGGCGTAAATCCGACTTTTAGCAGAGAC
GCTAACCTAAATACGACGTGACCAAGCCACCACCCCCTCGAATTGATACCTCAGACGTACGCAAACCAGGGCCATGACGCCCTTAACTCAGCCGAAATAG
GTGTTTTCTGGCAGACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1425 bp | 474 aa | 242 | 1666 | + | No |
Chemistry : DDE
ORF sequence :
MRKVYDSQYDLWKTQIADIEIDPKDRDDIPAVLMGLQALYVDAENRAKIFEILERHVRPEVSHRHGRPGMDLWRIFVLAVVKMALNCDFDRLTNLANHHQ
TLRQMLGHAEYGDRTKYQHQTVIDNVSLLTEEALQEINKVVVECGHAHLDVEAETPLECRVDSAVTKTNVHWPTDVNLLRDAMDSLLRTLHRTCAAHEVK
GWRKCQYWLREVRKAFNRVRDSRRWRSERKVKAYLGLCIQLVVRATVTLEELRKREIATDKIAHYLAHALRQIDQIERRLIKNETIPHHEKVFSVHEPHT
RWINKGKAGVLVELGLPICFMEDQYQFILHHEVLREGVDSDMIVQFIQAAQALYPSIVSCSMDKGYHSPGNRVALDGLLELNVLPKKGRKSQAEQARESA
PAFAAARRKHPGIESAINNLNHRGLDRIRTHGEEGFVRTVALGVVAANVHRLGQIVKKQRRQYDRWHKARRKAA
TLRQMLGHAEYGDRTKYQHQTVIDNVSLLTEEALQEINKVVVECGHAHLDVEAETPLECRVDSAVTKTNVHWPTDVNLLRDAMDSLLRTLHRTCAAHEVK
GWRKCQYWLREVRKAFNRVRDSRRWRSERKVKAYLGLCIQLVVRATVTLEELRKREIATDKIAHYLAHALRQIDQIERRLIKNETIPHHEKVFSVHEPHT
RWINKGKAGVLVELGLPICFMEDQYQFILHHEVLREGVDSDMIVQFIQAAQALYPSIVSCSMDKGYHSPGNRVALDGLLELNVLPKKGRKSQAEQARESA
PAFAAARRKHPGIESAINNLNHRGLDRIRTHGEEGFVRTVALGVVAANVHRLGQIVKKQRRQYDRWHKARRKAA
Blast result :
Comments
Genome in progress. Accession number: NZ_ADFK01000452.
ISCpo1 is 58% aa similar to ISPph5.
ISCpo1 is 58% aa similar to ISPph5.
References
1] ISfinder annotation (2010).
2] Siegl,A., Kamke,J., Hochmuth,T., Piel,J., Richter,M., Liang,C., Dandekar,T. and Hentschel,U. (2010) Direct submission Genbank.
2] Siegl,A., Kamke,J., Hochmuth,T., Piel,J., Richter,M., Liang,C., Dandekar,T. and Hentschel,U. (2010) Direct submission Genbank.