ISCpo1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Candidatus Poribacteria
Candidatus Poribacteria sp. WGA-A3
DNA section
IS Length : 1918 bp

Ends


IR Length : 12/15

IRL : GTGCTTGCCCGAAAATATAACTCTTGGTTGGTTTAGCGTGTTTCTATAGG
IRR : GTGTCTGCCAGAAAACACCTATTTCGGCTGAGTTAAGGGCGTCATGGCCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGTAACTTGATAGATAAGGTTCGTGT6

DNA sequence

GTGCTTGCCCGAAAATATAACTCTTGGTTGGTTTAGCGTGTTTCTATAGGGGTTTTTGGTGATTTTTGGCCGTATTTCGGCCCATATGGCCTGTTTTTGG
CGTCTGGGGGCCCTCTTAACCTCGGAGCTTATTCTGGCGAATGTTGCGCTGCATCTGGGTAATTCGGGGATGATTTGGGCGTAAATCCCCTGATTTGCCG
TAAATTGGGGGATTATTCGCACCATTCATCTCCTATCCATAATGCGTAAGGTGTACGATTCACAGTACGATCTCTGGAAAACCCAGATTGCTGATATTGA
GATTGATCCCAAGGATCGGGACGACATTCCTGCGGTGCTGATGGGGCTGCAGGCGTTGTACGTTGACGCAGAAAATCGGGCAAAAATCTTTGAGATTCTC
GAAAGGCATGTGCGGCCTGAGGTCAGTCATCGGCACGGTCGTCCGGGCATGGATCTGTGGCGTATTTTTGTTTTGGCCGTGGTAAAGATGGCCCTCAACT
GTGATTTTGATCGTCTGACAAATCTGGCGAACCATCATCAGACTTTACGCCAGATGCTGGGTCATGCGGAATATGGTGATCGGACGAAGTATCAGCATCA
GACGGTGATTGATAATGTTAGCCTGTTGACCGAGGAGGCTTTGCAGGAGATCAACAAGGTCGTTGTGGAATGCGGGCATGCACATCTGGACGTAGAGGCG
GAGACCCCTCTGGAGTGTCGTGTGGATTCGGCGGTAACGAAGACCAACGTGCATTGGCCCACGGATGTGAACCTGCTCCGGGACGCGATGGACAGTCTGC
TCCGCACGTTGCATCGCACCTGTGCGGCGCACGAGGTTAAGGGCTGGCGTAAGTGCCAGTATTGGTTGAGGGAAGTACGGAAGGCGTTCAATCGGGTGCG
CGATTCCCGTCGGTGGCGCAGTGAGCGCAAGGTTAAGGCCTATCTGGGATTGTGCATTCAGCTTGTTGTGCGGGCCACGGTGACCCTTGAAGAGCTACGG
AAGCGTGAGATTGCCACGGATAAGATCGCCCACTATTTGGCGCATGCGCTGCGTCAAATTGATCAGATTGAGCGTCGATTGATCAAAAACGAGACGATCC
CCCACCATGAGAAGGTATTTTCGGTCCATGAGCCGCATACGCGCTGGATCAACAAAGGCAAAGCGGGCGTGCTTGTGGAGTTGGGGTTGCCGATTTGTTT
TATGGAAGATCAGTATCAGTTCATCCTGCATCACGAAGTGTTGCGTGAAGGGGTGGATTCGGACATGATTGTTCAGTTCATCCAGGCGGCGCAGGCGCTG
TATCCCTCCATTGTCTCGTGCAGCATGGATAAGGGCTACCACTCGCCGGGTAACCGTGTGGCGTTGGATGGTCTGCTGGAGTTGAATGTGCTGCCGAAGA
AGGGCAGAAAGTCACAGGCAGAACAGGCACGGGAGTCTGCGCCGGCGTTCGCGGCGGCGCGCCGGAAGCATCCAGGGATTGAGTCGGCGATCAACAATCT
GAATCATCGCGGACTGGATCGGATACGGACGCACGGCGAGGAGGGGTTTGTTCGGACGGTCGCACTGGGGGTCGTGGCCGCGAATGTACACCGGTTGGGT
CAGATCGTTAAGAAGCAGCGGAGGCAATACGACCGGTGGCATAAGGCCCGCCGAAAGGCGGCGTGAAGCCCCCCTGGTCGTACGGATACGATCAAACAAG
GCGTGCAGAACAACAGAACTGGCCCGAGGTATGTCCGCTGGGCAGATCAGATCCCGAAAAATTTGCGGAAACCGGCGTAAATCCGACTTTTAGCAGAGAC
GCTAACCTAAATACGACGTGACCAAGCCACCACCCCCTCGAATTGATACCTCAGACGTACGCAAACCAGGGCCATGACGCCCTTAACTCAGCCGAAATAG
GTGTTTTCTGGCAGACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1425 bp474 aa2421666+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKVYDSQYDLWKTQIADIEIDPKDRDDIPAVLMGLQALYVDAENRAKIFEILERHVRPEVSHRHGRPGMDLWRIFVLAVVKMALNCDFDRLTNLANHHQ
TLRQMLGHAEYGDRTKYQHQTVIDNVSLLTEEALQEINKVVVECGHAHLDVEAETPLECRVDSAVTKTNVHWPTDVNLLRDAMDSLLRTLHRTCAAHEVK
GWRKCQYWLREVRKAFNRVRDSRRWRSERKVKAYLGLCIQLVVRATVTLEELRKREIATDKIAHYLAHALRQIDQIERRLIKNETIPHHEKVFSVHEPHT
RWINKGKAGVLVELGLPICFMEDQYQFILHHEVLREGVDSDMIVQFIQAAQALYPSIVSCSMDKGYHSPGNRVALDGLLELNVLPKKGRKSQAEQARESA
PAFAAARRKHPGIESAINNLNHRGLDRIRTHGEEGFVRTVALGVVAANVHRLGQIVKKQRRQYDRWHKARRKAA

 

Blast result :
Comments
Genome in progress. Accession number: NZ_ADFK01000452.
ISCpo1 is 58% aa similar to ISPph5.
References
1] ISfinder annotation (2010).
2] Siegl,A., Kamke,J., Hochmuth,T., Piel,J., Richter,M., Liang,C., Dandekar,T. and Hentschel,U. (2010) Direct submission Genbank.