ISfinder Mirror Site

ISSysp5

Family IS5
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NZ_AANP01000001	ND	Synechococcus sp.RS9917	Synechococcus sp.RS9917

DNA section

IS Length : 1398 bp

Ends

IR Length : 15/16

IRL : GAGTTTGCTGAAAAACCCCGTCGTCTCTGCGAAAATGGGCCAACTGCCCA
IRR : GAGTTTGCAGAAAAACTGCCTTGCTGGCCGCGTTTTCCCTCCTGAACGCT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TCCAGCTGGTGCCCTAA		TTAAGCCAGAATGTG	0

DNA sequence

GAGTTTGCTGAAAAACCCCGTCGTCTCTGCGAAAATGGGCCAACTGCCCAGCTGAGATGCGAGGTCAGCGAGAGCGCAGCGGCTCCCTGTTTTCCTACGT
GTCGATTGAGGAGAGGATTCCGGCCAGCCATCCGCTGCGGCGGATCCGGAAACTGGCCGATCAGGCTCTCGACCGGCTCAATCCAACCTTCTGCGCGCTG
TATGCCGCAGAAGGCCGGCCCTCAGTGCCACCCGAGCAGCTGCTGCTGGCCTCGTTGCTGCAGGCGTTTTACGGCATTCGCTCGGAGCGGTTGTTGCTCG
AGCAACTCAACTACAACCTCCTGTTTCGCTGGTTTGTGGGGCTGAGCCCTGATGATCCGATCTGGCACCCCACCACATTCACCAAAAACCGTGAGCGGCT
GCTCAATGACCAGGTGATGGGGAAGTTCCTGGAGAAGCTGATGGGTGCACCAGAAGTCAAACCGCTGCTCAGCGATGAGCACTTCTCAGTGGATGGCACG
CTGCTGCAGGCCTGGGCCTCCCATGCCTCGCTGGAGCGGATCGACGGTCAGGACGATCCCCCGCCGCCGCCATCAGGACCTGGCGAGGGCTTTGGTCAGC
CCAAAGAGGGCAAGAAGCGTGCCAAGGTTGATTTCCGTGGCATCAAGCTCAGCAACCAGACCCACCGCTCCAGCACCGATCCCGAGGCCTTGCTGGCCCG
GAAATCCAACGCTCACCCGGCCCAACCGAGCTATCGGGGCCATGTGCTGATGGACAACCGCCATGCCCTGATCGTGGATTGCAAAGTCACGCAGGCCACG
GGCACCGGAGAACGGGATGCCGCCAAAGCGATGGCTGCAGATCGTCCCGGTGCCCACCAGAAAACTCTTGGCGCCGACAAGAATTACGACACCCGGGGCT
TTGTCGCCGAGATGCGCCGCATCGGTGTGACGCCCCATGTGGCGCAGAACACAGCTCGCCCTGGTGGATCAGCGATCGATGGCCGCACTGCCCGCCACGA
GGGCTACGCCAAGTCGATCCATGCCCGCCGCGGCATCGAGAAGGTGTTTGGCTGGATCAAGCAGTGGGGCGGACTGCGCCAATTCAAGCTGCGCGGCACT
GAGAAAGTGAGCGCCGTGTTTGGCCTGCATGTGATCGCCTACAACCTGATTCGCATGGGCAACCTGCTCAAGGCGAAGCCTTCTCCGAGGGAGTGGCCGG
CGATGGCAGCGGCATGACCATGAACAGATGGTTGCCCAGAGGTGTGTGCAGGTGCCAGCGATCAGGCAGCCCCAGCGGGGCCAAACGCCTGAAATCTTGT
GTTCTGAGCCGCTGAATCGCTGAACTCCAGCCCGAACGGAGCGCGGTCAGCGTTCAGGAGGGAAAACGCGGCCAGCAAGGCAGTTTTTCTGCAAACTC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1161 bp	386 aa	57	1217	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGQRERSGSLFSYVSIEERIPASHPLRRIRKLADQALDRLNPTFCALYAAEGRPSVPPEQLLLASLLQAFYGIRSERLLLEQLNYNLLFRWFVGLSPDD
PIWHPTTFTKNRERLLNDQVMGKFLEKLMGAPEVKPLLSDEHFSVDGTLLQAWASHASLERIDGQDDPPPPPSGPGEGFGQPKEGKKRAKVDFRGIKLSN
QTHRSSTDPEALLARKSNAHPAQPSYRGHVLMDNRHALIVDCKVTQATGTGERDAAKAMAADRPGAHQKTLGADKNYDTRGFVAEMRRIGVTPHVAQNTA
RPGGSAIDGRTARHEGYAKSIHARRGIEKVFGWIKQWGGLRQFKLRGTEKVSAVFGLHVIAYNLIRMGNLLKAKPSPREWPAMAAA

Blast result :

Comments

ISSysp5 is 65% aa similar to ISNha7.

References

1] ISfinder annotation (2010)
2] Scanlan,D., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.