ISBusp3
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ADCC01000052 | ND | Burkholderia sp. | Burkholderia sp. CCGE1002 |
DNA section
IS Length : 1349 bp
Ends
IR Length : 11/12
IRL : CAGGCTGTTGAATTTCGGTCCCGCGTAAACGGGATCCTGGGGCCGAACGT
IRR : CAGGTTGTTGAAAAGCACCTCGTCATGAGGACCGAAGCGATGGTCAGGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCATCTATCT | CTAG | TGTTCCGTCC | 4 |
DNA sequence
CAGGCTGTTGAATTTCGGTCCCGCGTAAACGGGATCCTGGGGCCGAACGTTATGGATATCGTGTTCATGAACTTTGGCAGTGAATTCGATGCGCGGAATG
GATGAGACGCAGGAAGCTCTTTTCACGACGGTCAAGCTTGAGGACTTCGTTCCGGCCGATCATCCGTTGCGCCCCATACGGTTGCTTGTCAATCAGGCGT
TGACGCGGCTCAACGGATTGTTCGGCATCATCTATGCGGACAGCGGCCGGGCCTCGATTGCACCGGAGAAGCTGGTGCGTGCGCTTCTGTTGCAGGTGTT
CTACTCGGTGCGAAGCGAACGCATGCTGATGGAGCAGATGCAGTACAACCTCCTGTTCCGCTGGTTCGTTGGACTGGCCATCGAGGACACTGTATGGAAC
CACTCCGTCTTCTCGAAGAACCGTGACCGGCTGCTCGAGCATGAGGTCGTGGAGTCGTTCTTTACCGAAGTGATGACTCTCGCCGACAGGCAGGGTCTGC
TGTCCCGGGAGCATTTCTCGGTCGACGGCACGCTCATCCAGGCTTGGGCGAGTCACAAAAGTTTTCGCCGCAAGGACGGATCGGACGATCCACCGGCCGG
CGGCGGGCGCAACGCCGAAGCCGACCAGAAGGGTGAGCGACGTAGCAATGACACGCATGAGTCGAGCACTGATGCGGATGCGCGCCTGTTCAGAAGAGTA
AGCAGAGTCCGGCCATCCTCTGTTACCAGGGGCAATATCTTGATGGAGAACCGCTCCGGGCTGGTGATCGGTGCCGTGGTAAGCCATGCGGATGGCTTTG
ACGAGCGCGCCAGTGCGCTGCGACTGCTCGAGCGCGTGCCTGGCACTCACGCGAAGACAGTCGGTGCCGACAAGGCGTACGACGCGAATGATTTCGTAAA
CGATTGCCGGGCGCGCAACATAACCCCGCATGTCGCACGCAACGACGCCCGCCAGGGCGGCAGCGCGATCGATGAGCGTACCTCGCGGCACGCGGGATAC
TGGATGAGTCAGGTCATCCGCAAGCGTATCGAGGAGCATTTCGGCTGGGGCAAGACGGTCGGTCGGATCCGGCAGACGGTGTATCGCGGCATCAAGCGGG
TCGACCAGCACTTCAAGCTGACAATGGTCGCGAGCAATCTCACGCGCATGGCGCGAATAATGGACGCGATGCATACCGGAGCGGTGCAATGAGCCGCCGA
TGCGCGCGGCCCGCGAGGCCTGGCATCCCCGCGCAGGCGCGTTGCCTGCGCAAACTGATCGGCCCATCCCGATTTCAGTTGGAAATTGCACGCGAAACAC
TCCTGACCATCGCTTCGGTCCTCATGACGAGGTGCTTTTCAACAACCTG
GATGAGACGCAGGAAGCTCTTTTCACGACGGTCAAGCTTGAGGACTTCGTTCCGGCCGATCATCCGTTGCGCCCCATACGGTTGCTTGTCAATCAGGCGT
TGACGCGGCTCAACGGATTGTTCGGCATCATCTATGCGGACAGCGGCCGGGCCTCGATTGCACCGGAGAAGCTGGTGCGTGCGCTTCTGTTGCAGGTGTT
CTACTCGGTGCGAAGCGAACGCATGCTGATGGAGCAGATGCAGTACAACCTCCTGTTCCGCTGGTTCGTTGGACTGGCCATCGAGGACACTGTATGGAAC
CACTCCGTCTTCTCGAAGAACCGTGACCGGCTGCTCGAGCATGAGGTCGTGGAGTCGTTCTTTACCGAAGTGATGACTCTCGCCGACAGGCAGGGTCTGC
TGTCCCGGGAGCATTTCTCGGTCGACGGCACGCTCATCCAGGCTTGGGCGAGTCACAAAAGTTTTCGCCGCAAGGACGGATCGGACGATCCACCGGCCGG
CGGCGGGCGCAACGCCGAAGCCGACCAGAAGGGTGAGCGACGTAGCAATGACACGCATGAGTCGAGCACTGATGCGGATGCGCGCCTGTTCAGAAGAGTA
AGCAGAGTCCGGCCATCCTCTGTTACCAGGGGCAATATCTTGATGGAGAACCGCTCCGGGCTGGTGATCGGTGCCGTGGTAAGCCATGCGGATGGCTTTG
ACGAGCGCGCCAGTGCGCTGCGACTGCTCGAGCGCGTGCCTGGCACTCACGCGAAGACAGTCGGTGCCGACAAGGCGTACGACGCGAATGATTTCGTAAA
CGATTGCCGGGCGCGCAACATAACCCCGCATGTCGCACGCAACGACGCCCGCCAGGGCGGCAGCGCGATCGATGAGCGTACCTCGCGGCACGCGGGATAC
TGGATGAGTCAGGTCATCCGCAAGCGTATCGAGGAGCATTTCGGCTGGGGCAAGACGGTCGGTCGGATCCGGCAGACGGTGTATCGCGGCATCAAGCGGG
TCGACCAGCACTTCAAGCTGACAATGGTCGCGAGCAATCTCACGCGCATGGCGCGAATAATGGACGCGATGCATACCGGAGCGGTGCAATGAGCCGCCGA
TGCGCGCGGCCCGCGAGGCCTGGCATCCCCGCGCAGGCGCGTTGCCTGCGCAAACTGATCGGCCCATCCCGATTTCAGTTGGAAATTGCACGCGAAACAC
TCCTGACCATCGCTTCGGTCCTCATGACGAGGTGCTTTTCAACAACCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1095 bp | 364 aa | 98 | 1192 | + | No |
Chemistry : DDE
ORF sequence :
MDETQEALFTTVKLEDFVPADHPLRPIRLLVNQALTRLNGLFGIIYADSGRASIAPEKLVRALLLQVFYSVRSERMLMEQMQYNLLFRWFVGLAIEDTVW
NHSVFSKNRDRLLEHEVVESFFTEVMTLADRQGLLSREHFSVDGTLIQAWASHKSFRRKDGSDDPPAGGGRNAEADQKGERRSNDTHESSTDADARLFRR
VSRVRPSSVTRGNILMENRSGLVIGAVVSHADGFDERASALRLLERVPGTHAKTVGADKAYDANDFVNDCRARNITPHVARNDARQGGSAIDERTSRHAG
YWMSQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMVASNLTRMARIMDAMHTGAVQ
NHSVFSKNRDRLLEHEVVESFFTEVMTLADRQGLLSREHFSVDGTLIQAWASHKSFRRKDGSDDPPAGGGRNAEADQKGERRSNDTHESSTDADARLFRR
VSRVRPSSVTRGNILMENRSGLVIGAVVSHADGFDERASALRLLERVPGTHAKTVGADKAYDANDFVNDCRARNITPHVARNDARQGGSAIDERTSRHAG
YWMSQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMVASNLTRMARIMDAMHTGAVQ
Blast result :
Comments
ISBusp3 is 94% aa similar to ISBusp2.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Tiedje,J. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Tiedje,J. (2009) Direct submission GenBank.