ISLar7
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABCK01000005 | ND | Lentisphaera araneosa | Lentisphaera araneosa HTCC2155 |
DNA section
IS Length : 1884 bp
Ends
IR Length : 16
IRL : GTGCCTGACCTAAATGAACCTAAGTCTTTTAAGTATAATAATTTATAAGG
IRR : GTGCGTGACCGAAAACCCAGTGTTTATGAGTTTGTTGATGATTTTAAGTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTCTTCGATA | TATTTA | ATTTGATTCA | 6 |
| TTGCCGTCTT | TATTTA | TACTTTGTTC | 6 |
| TGATCCTAGC | TATTTA | ACTCTAATCA | 6 |
| AAAACATATT | TAAGTA | AGAAGTACAG | 6 |
| TGCTTCTGAT | TACTTA | AACAAACGGC | 6 |
| GCGTCAGCGC | TACTTA | TGTCTTTCTC | 6 |
| CCTAATAATA | TAATTA | CAAGAATCGC | 6 |
| AATGCGGTAT | TAACTA | CATAAAAAAA | 6 |
| GATACCTGCT | TAATTA | TGAATTAAGA | 6 |
| GTTTAATGAA | TAAGTA | AATAATTAAT | 6 |
| GCTCACCTTA | TAATTA | ATGAGAAAGC | 6 |
DNA sequence
GTGCCTGACCTAAATGAACCTAAGTCTTTTAAGTATAATAATTTATAAGGAAAATAAGTTGTGAGTTTTTCTAGAAAACAGTATTAAAGTACCCTATAAA
ACTTTTGTTTAAATGTATAGTACTTCATCATAAACTACTATTTATCCAATAGGATACAGATAAAATAAAAGAATCCAAGGTGTCATATAGCATGCGTAAT
TTTACAAGTACACAAGCAGAATTAGGAGAAAACCCACTTCTCGGAGTCACGCCAATTGAACAAGTGAGACTCGACACATACTGCCGTGATGAAATAACCA
AAACTCTTCGTGGTTTACAAGAAATTTATCGAAACAAAGTTTTACTCAAAGAAATCCAAGATGTTTTGTCTGAATTAGTTCCTAAAGGAACATCCTGGAA
TGATGGACGTAAAGGAATGGATCTCTGGGTTATTTTTGTTTTAGGCACTTTGCGTTTGAGCTGTAATTGGGATTATGACAAGCTCAAAAGTTGCTATGAT
TATCATCACAAAATTCGGGAGATCTGTGGAGTTGATCTTTTTTGTGATGTCGACATAGTTACAGGACGCCAAACAATACACGATAACGTTAGCCTTTTTA
CAAAAGAAATTGCCAATAAAATTAGTAAACTCGTAGTTGCTTTCAGCCATGAATTACTTTTCCCAGAAGAACGAGAATTACATAGTCGTTGCGATTCTTT
TGTTTTTGAAACGAATGTTCATTTCCCCACTGATTTGAATCTATTAAAAGATTCTGTACGCAAAGTATTGAGCATCGGAGGCAAATTGGCTTCATCTTTG
AAAATCACTGGCTGGCGTGAAGTAAAAAGCCAGCAAAAGAAATTCCATAGCCTTTATAATAAACTGAGCAAGATGCGTCACTCTAACTCGAAGAAAGAAG
AGCGAAAGGAAAAACGTCGCTTAGAAATAGAGGAGATAATTAAGGATTACCTTAGTGTGGCTCGAGCTCATTTACTCAAAGCAAGAACTCTCCAGAATTC
TTTAGATGAAGAGTGTCCCAAGCTTCAGTTAAACATGGATTACACGGACTTATTCATTAAGCAAATAAGTCGTAGAGTTCTTAATGGAGAGACTATTTCA
CCCGATGAAAAGGTGTATTCGATTTTTGAACCTCACACAGAATGGATATGCAAAGGAAAAGCTGGGATTCGTCAGGAACTTGGCGTGAAGGTATGTGTAG
TTGAAGATCAGTTTGGCTTTATTCTCGACCATAGGATCATGAAGGGCGAGCAGGATAAAGACGTGGCGGTTGAAATGGTTCGTAAAAGTAAGGAGCTGTA
CCCTGGGCTGACATCGATGAGTTTTGATAAGGGTTTTTATTCAAAGGTAGATAAGGATGGTCAAAATAATCACTCCCGCATTGAAGCATTAGAGGTAAGA
GCTCACCTCCCTGTAAAAGGTCGCCGAAATAAAGCTGCTCAAGAGCGTGAAAGTAAGGAGGCCTTTGTCGTCGCTCGCAAACAACACCCCGCAGTTGAAT
CAGCTATTAACGCTCTTGAAAGTCATGGTTTTGACCGATGCCCTGATAAGGGTACTCCTAATTTCGAACGTTATGCCGCTATGGCGATAAGTGCCAGTAA
TATCCATCATCTTGGTGCTATCATCATGGCCAGAGAAATCAAAGTCCTACGTAGAAAAAGAAAAAGCGCTTAAAGCTCTTCATAATAATAAAAACGCCAT
TCACGGCGTACTTTCTCCTGCCTTGACTTAGTGAATAAATAGAAAAAAAGCCTTTGTTCTGACGCCTAGGCCTTAAAAAAATGATAATACTATGACTGCA
CGACACGTATAACCATATTTTGAATTTTTATATTAACTTAAAATCATCAACAAACTCATAAACACTGGGTTTTCGGTCACGCAC
ACTTTTGTTTAAATGTATAGTACTTCATCATAAACTACTATTTATCCAATAGGATACAGATAAAATAAAAGAATCCAAGGTGTCATATAGCATGCGTAAT
TTTACAAGTACACAAGCAGAATTAGGAGAAAACCCACTTCTCGGAGTCACGCCAATTGAACAAGTGAGACTCGACACATACTGCCGTGATGAAATAACCA
AAACTCTTCGTGGTTTACAAGAAATTTATCGAAACAAAGTTTTACTCAAAGAAATCCAAGATGTTTTGTCTGAATTAGTTCCTAAAGGAACATCCTGGAA
TGATGGACGTAAAGGAATGGATCTCTGGGTTATTTTTGTTTTAGGCACTTTGCGTTTGAGCTGTAATTGGGATTATGACAAGCTCAAAAGTTGCTATGAT
TATCATCACAAAATTCGGGAGATCTGTGGAGTTGATCTTTTTTGTGATGTCGACATAGTTACAGGACGCCAAACAATACACGATAACGTTAGCCTTTTTA
CAAAAGAAATTGCCAATAAAATTAGTAAACTCGTAGTTGCTTTCAGCCATGAATTACTTTTCCCAGAAGAACGAGAATTACATAGTCGTTGCGATTCTTT
TGTTTTTGAAACGAATGTTCATTTCCCCACTGATTTGAATCTATTAAAAGATTCTGTACGCAAAGTATTGAGCATCGGAGGCAAATTGGCTTCATCTTTG
AAAATCACTGGCTGGCGTGAAGTAAAAAGCCAGCAAAAGAAATTCCATAGCCTTTATAATAAACTGAGCAAGATGCGTCACTCTAACTCGAAGAAAGAAG
AGCGAAAGGAAAAACGTCGCTTAGAAATAGAGGAGATAATTAAGGATTACCTTAGTGTGGCTCGAGCTCATTTACTCAAAGCAAGAACTCTCCAGAATTC
TTTAGATGAAGAGTGTCCCAAGCTTCAGTTAAACATGGATTACACGGACTTATTCATTAAGCAAATAAGTCGTAGAGTTCTTAATGGAGAGACTATTTCA
CCCGATGAAAAGGTGTATTCGATTTTTGAACCTCACACAGAATGGATATGCAAAGGAAAAGCTGGGATTCGTCAGGAACTTGGCGTGAAGGTATGTGTAG
TTGAAGATCAGTTTGGCTTTATTCTCGACCATAGGATCATGAAGGGCGAGCAGGATAAAGACGTGGCGGTTGAAATGGTTCGTAAAAGTAAGGAGCTGTA
CCCTGGGCTGACATCGATGAGTTTTGATAAGGGTTTTTATTCAAAGGTAGATAAGGATGGTCAAAATAATCACTCCCGCATTGAAGCATTAGAGGTAAGA
GCTCACCTCCCTGTAAAAGGTCGCCGAAATAAAGCTGCTCAAGAGCGTGAAAGTAAGGAGGCCTTTGTCGTCGCTCGCAAACAACACCCCGCAGTTGAAT
CAGCTATTAACGCTCTTGAAAGTCATGGTTTTGACCGATGCCCTGATAAGGGTACTCCTAATTTCGAACGTTATGCCGCTATGGCGATAAGTGCCAGTAA
TATCCATCATCTTGGTGCTATCATCATGGCCAGAGAAATCAAAGTCCTACGTAGAAAAAGAAAAAGCGCTTAAAGCTCTTCATAATAATAAAAACGCCAT
TCACGGCGTACTTTCTCCTGCCTTGACTTAGTGAATAAATAGAAAAAAAGCCTTTGTTCTGACGCCTAGGCCTTAAAAAAATGATAATACTATGACTGCA
CGACACGTATAACCATATTTTGAATTTTTATATTAACTTAAAATCATCAACAAACTCATAAACACTGGGTTTTCGGTCACGCAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1482 bp | 493 aa | 192 | 1673 | + | No |
Chemistry : DDE
ORF sequence :
MRNFTSTQAELGENPLLGVTPIEQVRLDTYCRDEITKTLRGLQEIYRNKVLLKEIQDVLSELVPKGTSWNDGRKGMDLWVIFVLGTLRLSCNWDYDKLKS
CYDYHHKIREICGVDLFCDVDIVTGRQTIHDNVSLFTKEIANKISKLVVAFSHELLFPEERELHSRCDSFVFETNVHFPTDLNLLKDSVRKVLSIGGKLA
SSLKITGWREVKSQQKKFHSLYNKLSKMRHSNSKKEERKEKRRLEIEEIIKDYLSVARAHLLKARTLQNSLDEECPKLQLNMDYTDLFIKQISRRVLNGE
TISPDEKVYSIFEPHTEWICKGKAGIRQELGVKVCVVEDQFGFILDHRIMKGEQDKDVAVEMVRKSKELYPGLTSMSFDKGFYSKVDKDGQNNHSRIEAL
EVRAHLPVKGRRNKAAQERESKEAFVVARKQHPAVESAINALESHGFDRCPDKGTPNFERYAAMAISASNIHHLGAIIMAREIKVLRRKRKSA
CYDYHHKIREICGVDLFCDVDIVTGRQTIHDNVSLFTKEIANKISKLVVAFSHELLFPEERELHSRCDSFVFETNVHFPTDLNLLKDSVRKVLSIGGKLA
SSLKITGWREVKSQQKKFHSLYNKLSKMRHSNSKKEERKEKRRLEIEEIIKDYLSVARAHLLKARTLQNSLDEECPKLQLNMDYTDLFIKQISRRVLNGE
TISPDEKVYSIFEPHTEWICKGKAGIRQELGVKVCVVEDQFGFILDHRIMKGEQDKDVAVEMVRKSKELYPGLTSMSFDKGFYSKVDKDGQNNHSRIEAL
EVRAHLPVKGRRNKAAQERESKEAFVVARKQHPAVESAINALESHGFDRCPDKGTPNFERYAAMAISASNIHHLGAIIMAREIKVLRRKRKSA
Blast result :
Comments
ISLar7 is 58% aa similar to ISPph5.
References
1] ISfinder annotation (2010).
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission Genbank.
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission Genbank.