ISPto9
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAPR01000004 | ND | Psychroflexus torquis | Psychroflexus torquis ATCC 700755 |
DNA section
IS Length : 1748 bp
Ends
IR Length : 20/26
IRL : GGGCTTGCTGTTTTTCTTATAATTATAATCTATTAAATTAAGCATCAGTG
IRR : GGGCTTGCTGATTTACTCAAGCTTATTTTAGTTCAAGAGGTATGTAATTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGTGAAGAAC | TAAATA | ATTTTTTCTT | 6 |
| TACAAATAAA | TATTTA | GGATATGCAA | 6 |
| ATTCTTCGTT | TATTTA | TACCATTTTA | 6 |
DNA sequence
GGGCTTGCTGTTTTTCTTATAATTATAATCTATTAAATTAAGCATCAGTGTTTTACGCATAAAAACACACGTTTTTTTCTTGCGTAATTGCATGGTTTTT
CGTATCTTCTAGTCATAAACCTATGCAGTTATGATAAAATATACGCCTTCTAATCAGTTAAGTTTATCCGAGTTTTCACATCCCTTCGAACAAGAATTGT
TATCTGATAATCGCTGGGTAAAATTAGCACAACTCATCCCTTGGGATGCTTTGGCAAAGGTATATTCCAATAAACTCAATGCACGTAACGGTAGAGAGAG
TATTGATGTCCGCATGGTTATAGGTGCAATTATTGTAAAGCATAAGATAGGGCTAAACGATAGAGAGACCGTTGCGATGATTAGCGAAAACATCTACTTG
CAATATTTCTGTGGATTAAAGTGTTTTCAAACCAAACCCCCTTTTCATCCCACTGTACTTGTAGCTATTCGTAAACGAATGGGGGCAGTAAATTTTGACT
CTTGGAATACTCTAATCATTGAAAAGGCAGATAGCTTGAAGCCAAAAAGGGCAAGCAATATTCAAAAGGACACCGAGGAAGATGCCCCTAATCAATGTGT
CTCTGATAGTAAACACAAAGGCAAACTAAAGATTGATGCTAGTGTGGCTGATCAAAGAATAGTGTTCCCTACCGATGCTGGTCTGCTTAATACAGCACGC
AAAGAAAGTGAGCGAATTATAGATTTGCTCTACGAGCAAACCCAAGGAGTTAATAAACCTCGGGATTACCGTCGAGTAGCAAGAACAGAATATCTTGTAT
TTTCTAAAAAACGCAGAAAGACAACCAAACAAATAAACAAGTTCATTCGAAAACAACTAGGATATACTAGGCGTAACCTATCTTATATTGAAAAACTGTT
AGACCAAATAGAAGATCAAAAAAAGGATGAACACTTGCCTGGCATGTTTACAGATCTTAGCACTGCTTATCCCTGTAAATTCCCTTTACCAAAACGGGAC
CAAAAGATTTACTGGGTGCTTCAACTCATCTATGAACAACAAAACTATATGTATCACGAAAAAGTTAATAGTGTAAAAAATAGAATAGTCAATATTTATC
AACCTTACGTTCGCCCTATCCCAAGAGGAAAGGATAAAGTATCGACAGAATTTGGAGCAAAGATTAGTGCTAGTGAGATAGATGGAATGAGTAGAGTAGA
ACATATAAGTTGGGATCAATTTAATGAATCTAAAGATTTAGTATTACAAGTAGAATCCTACAGAACCACCTTTGGTCACTACCCAGAATTACTACTAGCA
GACCAAATATACCTTAACAGAGAGAACAGAAAATGGCTCAAAGAAAAAGGGATTAGAATTGTAGGAAAACCATTAGGGAGACCGCCAAAACAAGAACTTT
CTGCCTATCAAAAGCGAAAACTCAAAAAAGAGCGAAACCAAAGAAACCTAATAGAAGGAAAGTTTGGACAAGCAAAAAACGCATACGGACTTAACAAAAT
AAAAGCCAAAAGAAAAGACACATCAGAAAGCTGGATTAGTGCCATTTTCTTCATAATGAACTTAATAAACTTATCAAAAATAGCAGATAAATATGCTATT
TTTTGTGCCTTATTTGAAAATTGGATATACACTAAGCTAAATCCCAAAATAAAAGGGTGTTTCTATAATACTGATGTCACTAAACCCTTTTTTATTCAAA
ATTACATACCTCTTGAACTAAAATAAGCTTGAGTAAATCAGCAAGCCC
CGTATCTTCTAGTCATAAACCTATGCAGTTATGATAAAATATACGCCTTCTAATCAGTTAAGTTTATCCGAGTTTTCACATCCCTTCGAACAAGAATTGT
TATCTGATAATCGCTGGGTAAAATTAGCACAACTCATCCCTTGGGATGCTTTGGCAAAGGTATATTCCAATAAACTCAATGCACGTAACGGTAGAGAGAG
TATTGATGTCCGCATGGTTATAGGTGCAATTATTGTAAAGCATAAGATAGGGCTAAACGATAGAGAGACCGTTGCGATGATTAGCGAAAACATCTACTTG
CAATATTTCTGTGGATTAAAGTGTTTTCAAACCAAACCCCCTTTTCATCCCACTGTACTTGTAGCTATTCGTAAACGAATGGGGGCAGTAAATTTTGACT
CTTGGAATACTCTAATCATTGAAAAGGCAGATAGCTTGAAGCCAAAAAGGGCAAGCAATATTCAAAAGGACACCGAGGAAGATGCCCCTAATCAATGTGT
CTCTGATAGTAAACACAAAGGCAAACTAAAGATTGATGCTAGTGTGGCTGATCAAAGAATAGTGTTCCCTACCGATGCTGGTCTGCTTAATACAGCACGC
AAAGAAAGTGAGCGAATTATAGATTTGCTCTACGAGCAAACCCAAGGAGTTAATAAACCTCGGGATTACCGTCGAGTAGCAAGAACAGAATATCTTGTAT
TTTCTAAAAAACGCAGAAAGACAACCAAACAAATAAACAAGTTCATTCGAAAACAACTAGGATATACTAGGCGTAACCTATCTTATATTGAAAAACTGTT
AGACCAAATAGAAGATCAAAAAAAGGATGAACACTTGCCTGGCATGTTTACAGATCTTAGCACTGCTTATCCCTGTAAATTCCCTTTACCAAAACGGGAC
CAAAAGATTTACTGGGTGCTTCAACTCATCTATGAACAACAAAACTATATGTATCACGAAAAAGTTAATAGTGTAAAAAATAGAATAGTCAATATTTATC
AACCTTACGTTCGCCCTATCCCAAGAGGAAAGGATAAAGTATCGACAGAATTTGGAGCAAAGATTAGTGCTAGTGAGATAGATGGAATGAGTAGAGTAGA
ACATATAAGTTGGGATCAATTTAATGAATCTAAAGATTTAGTATTACAAGTAGAATCCTACAGAACCACCTTTGGTCACTACCCAGAATTACTACTAGCA
GACCAAATATACCTTAACAGAGAGAACAGAAAATGGCTCAAAGAAAAAGGGATTAGAATTGTAGGAAAACCATTAGGGAGACCGCCAAAACAAGAACTTT
CTGCCTATCAAAAGCGAAAACTCAAAAAAGAGCGAAACCAAAGAAACCTAATAGAAGGAAAGTTTGGACAAGCAAAAAACGCATACGGACTTAACAAAAT
AAAAGCCAAAAGAAAAGACACATCAGAAAGCTGGATTAGTGCCATTTTCTTCATAATGAACTTAATAAACTTATCAAAAATAGCAGATAAATATGCTATT
TTTTGTGCCTTATTTGAAAATTGGATATACACTAAGCTAAATCCCAAAATAAAAGGGTGTTTCTATAATACTGATGTCACTAAACCCTTTTTTATTCAAA
ATTACATACCTCTTGAACTAAAATAAGCTTGAGTAAATCAGCAAGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1596 bp | 531 aa | 131 | 1726 | + | No |
Chemistry : DDE
ORF sequence :
MIKYTPSNQLSLSEFSHPFEQELLSDNRWVKLAQLIPWDALAKVYSNKLNARNGRESIDVRMVIGAIIVKHKIGLNDRETVAMISENIYLQYFCGLKCFQ
TKPPFHPTVLVAIRKRMGAVNFDSWNTLIIEKADSLKPKRASNIQKDTEEDAPNQCVSDSKHKGKLKIDASVADQRIVFPTDAGLLNTARKESERIIDLL
YEQTQGVNKPRDYRRVARTEYLVFSKKRRKTTKQINKFIRKQLGYTRRNLSYIEKLLDQIEDQKKDEHLPGMFTDLSTAYPCKFPLPKRDQKIYWVLQLI
YEQQNYMYHEKVNSVKNRIVNIYQPYVRPIPRGKDKVSTEFGAKISASEIDGMSRVEHISWDQFNESKDLVLQVESYRTTFGHYPELLLADQIYLNRENR
KWLKEKGIRIVGKPLGRPPKQELSAYQKRKLKKERNQRNLIEGKFGQAKNAYGLNKIKAKRKDTSESWISAIFFIMNLINLSKIADKYAIFCALFENWIY
TKLNPKIKGCFYNTDVTKPFFIQNYIPLELK
TKPPFHPTVLVAIRKRMGAVNFDSWNTLIIEKADSLKPKRASNIQKDTEEDAPNQCVSDSKHKGKLKIDASVADQRIVFPTDAGLLNTARKESERIIDLL
YEQTQGVNKPRDYRRVARTEYLVFSKKRRKTTKQINKFIRKQLGYTRRNLSYIEKLLDQIEDQKKDEHLPGMFTDLSTAYPCKFPLPKRDQKIYWVLQLI
YEQQNYMYHEKVNSVKNRIVNIYQPYVRPIPRGKDKVSTEFGAKISASEIDGMSRVEHISWDQFNESKDLVLQVESYRTTFGHYPELLLADQIYLNRENR
KWLKEKGIRIVGKPLGRPPKQELSAYQKRKLKKERNQRNLIEGKFGQAKNAYGLNKIKAKRKDTSESWISAIFFIMNLINLSKIADKYAIFCALFENWIY
TKLNPKIKGCFYNTDVTKPFFIQNYIPLELK
Blast result :
Comments
ISPto9 is 58% aa similar to ISCph12.
References
1] ISfinder annotation (2010)
2] Bowman,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank.
2] Bowman,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank.