ISLar5
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABCK01000005 | ND | Lentisphaera araneosa | Lentisphaera araneosa HTCC2155 |
DNA section
IS Length : 1583 bp
Ends
IR Length : 10/11
IRL : GGGCTCACTGATTAAGATATAAATAACTTATATACAATGAGATAAGTGTA
IRR : GGCCTTACTGAATGACTCGTCTTTTGAGATGCTCACCCTGGCTAATGATA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGCTTTTATC | TAAATA | AAAACAGCGA | 6 |
DNA sequence
GGGCTCACTGATTAAGATATAAATAACTTATATACAATGAGATAAGTGTAATTCATGCTATGTTATATGTAAACAAAACCCCTCAAAACAGTCATTAGGT
TTGCATAAGATGTATAAAAATACGGGCTCAGAGCCCAAAATGGCCAATTTACCTTATTTTCTAGATGGTACACTCAATATCAATAATCGCTGGGTCAAGT
TAGCGGCAATAATACCTTGGACAGATGTCGAAGAAATTTATGCACTAAATTTCACCAGTCATACTGGGCCCAAAGCTCTTCCTGCAAGAACTGCATTTGG
TTCCCTTATCATTCAAGTAAAGCTAAGTTTAACTGATGAAGAAACGGTAGAAATGATTTCTGAAAATCCCTATCTTCAATATTTCTTGGGCTTTGAAAGA
TATAAACAGGAAGCACCTTTTGATTCGAGCATGATGACTCATTTTCGAAAGCGTTTTGGCGCTCAGGACATTAAAGACATTGACGAACTCCTGCATACAG
CGACACGTAAAAAAGAAGAGGATTCTAATGATGATTCAGACAATGATCCTCCATCAAATAAGGGTTCTTTAATTGTTGATGCCAGTTGTGTTCCTGGTGA
TATTCACTACCCAACTGACCTTGGGTTGCTAAATAAAGCCCGTGAAAAAACTGAGGAAGTAATCGATATCCTTTGGTGTCATCGCTCAAATACAGAAGAT
AAAGTTAAGCCTCGAACTTATCGTGAAGATGGCAGGAAAAGCTTTTTAAGTATTGTTCTAAAAAAACGTGTTTCGAAAAAGAAAAGACGTGAGGTGATTA
ACAGACAATTCCATTGCGTAAGGAGGAACCTCGCCAGTATAGATGAACTCAAAAAGTATGCCGATCTTACTCTATTGAAGCCTAGTTTATATCGTGAACT
TCTGGTGATCGGGACACTTTATCAACAACAGCAATACATGTACGATAACAAAGTAACAAGCGTAGATGATCGCATCGTAAGTATTCATCAACCACATATC
CGTCCCATAGTTCGGGGGAAGGCGGGAGCTCATACGGAATTCGGAGCAAAAATATCTATCAGTGTGGTCGATGGCTGGACCTTTACCGATACGATTAGCT
TTGACTCTTATAATGAAGGGACCGAACTGATTTCACAAATTGAAAAATACAAAGAACGATTCGGTTATTATCCCGAATCAACACATGCTGACAAAATCTA
CCGAAACAAAGAAAATCGAGCACATTGTAAAAAGCATGGGATAAGGATAAGTGGTCCCAGTCTTGGAAGGCCTCCCAAAGATGAAAAATTACGTAAAGAA
CAAAAGGATATACAACGCCAAGATGAAGCTATAAGAAACCAAGTAGAAGGCTGTTTTGGTGTAGCCAAAAGACGCTATAAACTCGATCGCATTTTCACGA
AAATTAAAGCGTCGTCTGAAACACTTATTGCTTTAATATTCATGGTGATGAACTTGGACAAGGCATTAGCCTTTTTATCACTTTTTGGCCAATATTATAA
GCAGCTATTAGAACATTTTCTTAACTTTATAAGTATCATTAGCCAGGGTGAGCATCTCAAAAGACGAGTCATTCAGTAAGGCC
TTGCATAAGATGTATAAAAATACGGGCTCAGAGCCCAAAATGGCCAATTTACCTTATTTTCTAGATGGTACACTCAATATCAATAATCGCTGGGTCAAGT
TAGCGGCAATAATACCTTGGACAGATGTCGAAGAAATTTATGCACTAAATTTCACCAGTCATACTGGGCCCAAAGCTCTTCCTGCAAGAACTGCATTTGG
TTCCCTTATCATTCAAGTAAAGCTAAGTTTAACTGATGAAGAAACGGTAGAAATGATTTCTGAAAATCCCTATCTTCAATATTTCTTGGGCTTTGAAAGA
TATAAACAGGAAGCACCTTTTGATTCGAGCATGATGACTCATTTTCGAAAGCGTTTTGGCGCTCAGGACATTAAAGACATTGACGAACTCCTGCATACAG
CGACACGTAAAAAAGAAGAGGATTCTAATGATGATTCAGACAATGATCCTCCATCAAATAAGGGTTCTTTAATTGTTGATGCCAGTTGTGTTCCTGGTGA
TATTCACTACCCAACTGACCTTGGGTTGCTAAATAAAGCCCGTGAAAAAACTGAGGAAGTAATCGATATCCTTTGGTGTCATCGCTCAAATACAGAAGAT
AAAGTTAAGCCTCGAACTTATCGTGAAGATGGCAGGAAAAGCTTTTTAAGTATTGTTCTAAAAAAACGTGTTTCGAAAAAGAAAAGACGTGAGGTGATTA
ACAGACAATTCCATTGCGTAAGGAGGAACCTCGCCAGTATAGATGAACTCAAAAAGTATGCCGATCTTACTCTATTGAAGCCTAGTTTATATCGTGAACT
TCTGGTGATCGGGACACTTTATCAACAACAGCAATACATGTACGATAACAAAGTAACAAGCGTAGATGATCGCATCGTAAGTATTCATCAACCACATATC
CGTCCCATAGTTCGGGGGAAGGCGGGAGCTCATACGGAATTCGGAGCAAAAATATCTATCAGTGTGGTCGATGGCTGGACCTTTACCGATACGATTAGCT
TTGACTCTTATAATGAAGGGACCGAACTGATTTCACAAATTGAAAAATACAAAGAACGATTCGGTTATTATCCCGAATCAACACATGCTGACAAAATCTA
CCGAAACAAAGAAAATCGAGCACATTGTAAAAAGCATGGGATAAGGATAAGTGGTCCCAGTCTTGGAAGGCCTCCCAAAGATGAAAAATTACGTAAAGAA
CAAAAGGATATACAACGCCAAGATGAAGCTATAAGAAACCAAGTAGAAGGCTGTTTTGGTGTAGCCAAAAGACGCTATAAACTCGATCGCATTTTCACGA
AAATTAAAGCGTCGTCTGAAACACTTATTGCTTTAATATTCATGGTGATGAACTTGGACAAGGCATTAGCCTTTTTATCACTTTTTGGCCAATATTATAA
GCAGCTATTAGAACATTTTCTTAACTTTATAAGTATCATTAGCCAGGGTGAGCATCTCAAAAGACGAGTCATTCAGTAAGGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1470 bp | 489 aa | 110 | 1579 | + | No |
Chemistry : DDE
ORF sequence :
MYKNTGSEPKMANLPYFLDGTLNINNRWVKLAAIIPWTDVEEIYALNFTSHTGPKALPARTAFGSLIIQVKLSLTDEETVEMISENPYLQYFLGFERYKQ
EAPFDSSMMTHFRKRFGAQDIKDIDELLHTATRKKEEDSNDDSDNDPPSNKGSLIVDASCVPGDIHYPTDLGLLNKAREKTEEVIDILWCHRSNTEDKVK
PRTYREDGRKSFLSIVLKKRVSKKKRREVINRQFHCVRRNLASIDELKKYADLTLLKPSLYRELLVIGTLYQQQQYMYDNKVTSVDDRIVSIHQPHIRPI
VRGKAGAHTEFGAKISISVVDGWTFTDTISFDSYNEGTELISQIEKYKERFGYYPESTHADKIYRNKENRAHCKKHGIRISGPSLGRPPKDEKLRKEQKD
IQRQDEAIRNQVEGCFGVAKRRYKLDRIFTKIKASSETLIALIFMVMNLDKALAFLSLFGQYYKQLLEHFLNFISIISQGEHLKRRVIQ
EAPFDSSMMTHFRKRFGAQDIKDIDELLHTATRKKEEDSNDDSDNDPPSNKGSLIVDASCVPGDIHYPTDLGLLNKAREKTEEVIDILWCHRSNTEDKVK
PRTYREDGRKSFLSIVLKKRVSKKKRREVINRQFHCVRRNLASIDELKKYADLTLLKPSLYRELLVIGTLYQQQQYMYDNKVTSVDDRIVSIHQPHIRPI
VRGKAGAHTEFGAKISISVVDGWTFTDTISFDSYNEGTELISQIEKYKERFGYYPESTHADKIYRNKENRAHCKKHGIRISGPSLGRPPKDEKLRKEQKD
IQRQDEAIRNQVEGCFGVAKRRYKLDRIFTKIKASSETLIALIFMVMNLDKALAFLSLFGQYYKQLLEHFLNFISIISQGEHLKRRVIQ
Blast result :
Comments
ISLar5 is 65% aa similar to ISCph12.
References
1] ISfinder annotation (2010)
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission.
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission.