ISCysp17
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAXW01000010 | ND | Cyanothece sp. | Cyanothece sp. CCY0110 |
DNA section
IS Length : 1701 bp
Ends
IR Length : 14/16
IRL : GAGTTTGCTTATAAAGGATAGAACAGTTAATCCATCAAGGTTACAGACTA
IRR : GGCTTTGCTGAAAAAGTCACTCAAAAATTTATGCGGCCAAAAGCCAGTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAATTCCCAA | TACTTA | GTTAACTTGA | 6 |
DNA sequence
GAGTTTGCTTATAAAGGATAGAACAGTTAATCCATCAAGGTTACAGACTAATCTATCTCCCGAAAAGTGCAACAAAAAAGCCGCCAAAGTTGCCCGAAAA
GCTCTAAAATTGGTAAAAGTCCCTTGCACCTGGTTGACTAAAACAAATGTACCGTAAGAAACAGCACTCGCCAATCACCCCAGAAAAATTTGAACTACTA
CCAGGAACAAAGTTATCATTAGAAAATCGTTGGGTGATCATGGCCGAGTTGATACCTTGGGATGAGTTTGAAGAAGAATATGCAAAACAGTTTAAAATAG
AAAAAGGTGCGCCAGCTAAGCCATTTAGGATGGCATTAGGAGCGTTAATAATCAAAGAACAGTTAGGAATAAGCGATAGGGAAACAGTAGAACAAATAAG
AGAAAATCCGTATCTACAATACTTTATAGGATTAGAAGCCTATACATTTGAAGCTCCCTTTGAAGCCTCAATGATGGTGCATTTTAGACAGAGGATAAAT
GTAGAAATGGTGAATAAAATTAATGAAGAGATGGTCAAAACGGGAAGAGAGAAGACAGAACAAAAAGAAGAAAAGTCAAGCTCAGACTCTGAAGAAATAG
GAGAGAGGGAAAATAAAGGTAAACTGATATTAGATGCCACCTGCGCCCCTGGTGATATCAAATATCCGACAGATTTAGAAATATTAAATCAAGGAAGAAA
AGCTACAGAACAGATAATAGACAGTCTTTATAAATCCATAAAAAGAAGACTCAAGAAAAAACCAAGAACGTATCGAAATATAGCAAGAATTGAGTATTTA
AGAATAGCGAAAAAGCGTCGTTCTACTAAAAAAGAGGGAAGAGAAGCGATTAGAAAACAACTTAAGTATATTAAAAAGAATCTAGTCAGTATAGAGAAAC
TTATCTTAGAGGGGGCTACCCTAGATAGCCTAAATAAAAGACAAAGAAATCTTCTAGAAGTTGTCAAAAAAGTTTATGAACAGCAACAACAGATGTGGGA
AAAAGAAACTCAAAGTGTTTCCCAAAGAATTGTCAGTATAAATCAACCGCATATTCGACCTATCGTGAGAGGAAAAGCAGGGAAACCCACAGAGTTTGGA
GCTAAACTTTCAGTAAGTTATGTAGATAACTATATATTTTTAGATAGAATAAGTTGGGAAAATTTTAATGAATCTGGAGACTTACAAGGACAAGTAGAAA
AGTTTAAACAGACTTATGGTTGCTATCCATCCTCAGTTCATGCAGATAGAATTTATCGAAGTAAAGCTAATAAAGATTGGTGTAAGCAAAGAGGAATTAG
ATTAAGTGGAATCGGACTAGGAAGACCCCCTAAGAATATCAGTCAAGAAGAAAAAAGGCAAACCAAAATAGATGAGGGATTTCGCAATAGAATTGAAGGA
AAGTTTGGACAAGCGAAGAGAAAATTTAGTCTAGATTTGGTTAAAACTAAGCTTAAAGAAACATCAGAAACTGCTATTGCTATTACATTTTTAGTAATCA
ACCTTTCTCAACTTCTTCGGCAGTTATTATTACTTCTTTTGTCATTTTCTGTTACCAGTAAAACACTTGAACTAAACAAGCAAAAAATGATAACAAAAAC
TGATTTTTTAAATTCTTTTATAGCAGTTAAAGTTATTAATTTAGAGGCAAATTACTGGCTTTTGGCCGCATAAATTTTTGAGTGACTTTTTCAGCAAAGC
C
GCTCTAAAATTGGTAAAAGTCCCTTGCACCTGGTTGACTAAAACAAATGTACCGTAAGAAACAGCACTCGCCAATCACCCCAGAAAAATTTGAACTACTA
CCAGGAACAAAGTTATCATTAGAAAATCGTTGGGTGATCATGGCCGAGTTGATACCTTGGGATGAGTTTGAAGAAGAATATGCAAAACAGTTTAAAATAG
AAAAAGGTGCGCCAGCTAAGCCATTTAGGATGGCATTAGGAGCGTTAATAATCAAAGAACAGTTAGGAATAAGCGATAGGGAAACAGTAGAACAAATAAG
AGAAAATCCGTATCTACAATACTTTATAGGATTAGAAGCCTATACATTTGAAGCTCCCTTTGAAGCCTCAATGATGGTGCATTTTAGACAGAGGATAAAT
GTAGAAATGGTGAATAAAATTAATGAAGAGATGGTCAAAACGGGAAGAGAGAAGACAGAACAAAAAGAAGAAAAGTCAAGCTCAGACTCTGAAGAAATAG
GAGAGAGGGAAAATAAAGGTAAACTGATATTAGATGCCACCTGCGCCCCTGGTGATATCAAATATCCGACAGATTTAGAAATATTAAATCAAGGAAGAAA
AGCTACAGAACAGATAATAGACAGTCTTTATAAATCCATAAAAAGAAGACTCAAGAAAAAACCAAGAACGTATCGAAATATAGCAAGAATTGAGTATTTA
AGAATAGCGAAAAAGCGTCGTTCTACTAAAAAAGAGGGAAGAGAAGCGATTAGAAAACAACTTAAGTATATTAAAAAGAATCTAGTCAGTATAGAGAAAC
TTATCTTAGAGGGGGCTACCCTAGATAGCCTAAATAAAAGACAAAGAAATCTTCTAGAAGTTGTCAAAAAAGTTTATGAACAGCAACAACAGATGTGGGA
AAAAGAAACTCAAAGTGTTTCCCAAAGAATTGTCAGTATAAATCAACCGCATATTCGACCTATCGTGAGAGGAAAAGCAGGGAAACCCACAGAGTTTGGA
GCTAAACTTTCAGTAAGTTATGTAGATAACTATATATTTTTAGATAGAATAAGTTGGGAAAATTTTAATGAATCTGGAGACTTACAAGGACAAGTAGAAA
AGTTTAAACAGACTTATGGTTGCTATCCATCCTCAGTTCATGCAGATAGAATTTATCGAAGTAAAGCTAATAAAGATTGGTGTAAGCAAAGAGGAATTAG
ATTAAGTGGAATCGGACTAGGAAGACCCCCTAAGAATATCAGTCAAGAAGAAAAAAGGCAAACCAAAATAGATGAGGGATTTCGCAATAGAATTGAAGGA
AAGTTTGGACAAGCGAAGAGAAAATTTAGTCTAGATTTGGTTAAAACTAAGCTTAAAGAAACATCAGAAACTGCTATTGCTATTACATTTTTAGTAATCA
ACCTTTCTCAACTTCTTCGGCAGTTATTATTACTTCTTTTGTCATTTTCTGTTACCAGTAAAACACTTGAACTAAACAAGCAAAAAATGATAACAAAAAC
TGATTTTTTAAATTCTTTTATAGCAGTTAAAGTTATTAATTTAGAGGCAAATTACTGGCTTTTGGCCGCATAAATTTTTGAGTGACTTTTTCAGCAAAGC
C
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1527 bp | 508 aa | 147 | 1673 | + | No |
Chemistry : DDE
ORF sequence :
MYRKKQHSPITPEKFELLPGTKLSLENRWVIMAELIPWDEFEEEYAKQFKIEKGAPAKPFRMALGALIIKEQLGISDRETVEQIRENPYLQYFIGLEAYT
FEAPFEASMMVHFRQRINVEMVNKINEEMVKTGREKTEQKEEKSSSDSEEIGERENKGKLILDATCAPGDIKYPTDLEILNQGRKATEQIIDSLYKSIKR
RLKKKPRTYRNIARIEYLRIAKKRRSTKKEGREAIRKQLKYIKKNLVSIEKLILEGATLDSLNKRQRNLLEVVKKVYEQQQQMWEKETQSVSQRIVSINQ
PHIRPIVRGKAGKPTEFGAKLSVSYVDNYIFLDRISWENFNESGDLQGQVEKFKQTYGCYPSSVHADRIYRSKANKDWCKQRGIRLSGIGLGRPPKNISQ
EEKRQTKIDEGFRNRIEGKFGQAKRKFSLDLVKTKLKETSETAIAITFLVINLSQLLRQLLLLLLSFSVTSKTLELNKQKMITKTDFLNSFIAVKVINLE
ANYWLLAA
FEAPFEASMMVHFRQRINVEMVNKINEEMVKTGREKTEQKEEKSSSDSEEIGERENKGKLILDATCAPGDIKYPTDLEILNQGRKATEQIIDSLYKSIKR
RLKKKPRTYRNIARIEYLRIAKKRRSTKKEGREAIRKQLKYIKKNLVSIEKLILEGATLDSLNKRQRNLLEVVKKVYEQQQQMWEKETQSVSQRIVSINQ
PHIRPIVRGKAGKPTEFGAKLSVSYVDNYIFLDRISWENFNESGDLQGQVEKFKQTYGCYPSSVHADRIYRSKANKDWCKQRGIRLSGIGLGRPPKNISQ
EEKRQTKIDEGFRNRIEGKFGQAKRKFSLDLVKTKLKETSETAIAITFLVINLSQLLRQLLLLLLSFSVTSKTLELNKQKMITKTDFLNSFIAVKVINLE
ANYWLLAA
Blast result :
Comments
ISCysp17 is 80% aa similar to ISCwa2.
References
1] ISfinder annotation (2010)
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.